Wall clock time and date at job start Mon Mar 30 2020 01:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38307 * 120.36056 * 2 1 4 4 N 1.31891 * 121.03168 * 179.70243 * 3 2 1 5 5 C 1.31747 * 121.84465 * 0.56120 * 4 3 2 6 6 C 1.50704 * 119.70016 * 179.71344 * 5 4 3 7 7 C 1.39300 * 120.59985 * 359.43686 * 5 4 3 8 8 C 1.48392 * 120.53839 * 180.29679 * 7 5 4 9 9 C 1.39009 * 120.41721 * 244.99914 * 8 7 5 10 10 C 1.40951 * 118.12724 * 179.97438 * 9 8 7 11 11 C 1.41376 * 120.57355 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99907 * 203.54838 * 11 10 9 13 13 C 1.39901 * 120.00088 * 23.55021 * 11 10 9 14 14 N 1.30861 * 119.99687 * 17.59757 * 13 11 10 15 15 Si 1.86803 * 119.99855 * 197.59660 * 13 11 10 16 16 H 1.48490 * 109.47376 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46678 * 120.00356 * 15 13 11 18 18 H 1.48494 * 109.46943 * 239.99612 * 15 13 11 19 19 C 1.40805 * 118.85236 * 0.02562 * 10 9 8 20 20 N 1.31498 * 120.69759 * 0.02562 * 19 10 9 21 21 C 1.32164 * 122.07671 * 359.72449 * 20 19 10 22 22 F 1.35101 * 119.45848 * 180.26728 * 21 20 19 23 23 C 1.38416 * 120.35306 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.47426 * 270.03203 * 1 2 3 25 25 H 1.09005 * 109.46747 * 30.02819 * 1 2 3 26 26 H 1.09000 * 109.47468 * 150.01915 * 1 2 3 27 27 H 1.08000 * 119.48605 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46995 * 269.73345 * 6 5 4 29 29 H 1.08996 * 109.47382 * 149.72536 * 6 5 4 30 30 H 1.09008 * 109.47022 * 29.72692 * 6 5 4 31 31 H 1.08005 * 120.93873 * 359.95960 * 9 8 7 32 32 H 0.97004 * 119.99781 * 179.97438 * 14 13 11 33 33 H 1.08003 * 119.64813 * 180.02562 * 19 10 9 34 34 H 1.07995 * 120.84506 * 0.04890 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1934 0.0000 4 7 3.5249 1.2089 0.0059 5 6 4.2331 0.0979 0.0010 6 6 5.7384 0.1720 0.0016 7 6 3.6033 -1.1445 0.0011 8 6 4.4023 -2.3949 0.0023 9 6 4.3552 -3.2613 -1.0838 10 6 5.1340 -4.4349 -1.0319 11 6 5.1245 -5.3524 -2.1075 12 1 5.3892 -6.3857 -1.9383 13 6 4.7723 -4.9218 -3.3912 14 7 4.7871 -3.6455 -3.6802 15 14 4.2809 -6.1686 -4.6925 16 1 4.3444 -7.5360 -4.1171 17 1 2.8959 -5.8879 -5.1489 18 1 5.2110 -6.0727 -5.8461 19 6 5.9207 -4.6784 0.1102 20 7 5.9302 -3.8275 1.1127 21 6 5.2164 -2.7152 1.0960 22 9 5.2700 -1.8755 2.1529 23 6 2.2065 -1.1944 0.0005 24 1 -0.3634 0.0006 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6636 2.1273 -0.0004 28 1 6.1016 0.1897 -1.0260 29 1 6.1448 -0.6988 0.5158 30 1 6.0573 1.0790 0.5153 31 1 3.7389 -3.0414 -1.9431 32 1 4.5432 -3.3470 -4.5703 33 1 6.5227 -5.5735 0.1633 34 1 1.6862 -2.1408 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239905985.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:49 Heat of formation + Delta-G solvation = -13.500636 kcal Electronic energy + Delta-G solvation = -20250.559488 eV Core-core repulsion = 17061.237029 eV Total energy + Delta-G solvation = -3189.322459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.49479 -41.40598 -40.00186 -36.05700 -35.23872 -34.67324 -32.33729 -31.06952 -30.14402 -27.41489 -26.42964 -25.27336 -23.68378 -23.11460 -21.80664 -19.29841 -18.52740 -18.01613 -17.56792 -17.11063 -16.93037 -16.52028 -16.05905 -15.50094 -15.11635 -14.38450 -14.26680 -14.15623 -14.11900 -13.94042 -13.79611 -13.67434 -13.40807 -13.12954 -13.00742 -12.99281 -12.87903 -12.61569 -12.35788 -11.87385 -11.27071 -10.97450 -10.51203 -10.36070 -10.13411 -9.70068 -9.32480 -8.81919 -6.52711 -0.04676 0.23122 0.55306 0.79722 1.40932 1.46899 1.57241 2.15349 2.52277 2.73147 3.22402 3.34452 3.42674 3.64571 3.85256 3.91007 4.06891 4.21786 4.34530 4.53724 4.60929 4.61121 4.62440 4.82269 4.87256 4.89725 5.01894 5.04021 5.10762 5.20292 5.26577 5.32352 5.55635 5.69330 5.77081 5.88707 6.32988 6.58120 6.61633 6.97951 7.30222 8.12104 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.006704 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.965885 B = 4175.409920 C = 5102.495908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.138 4.138 3 C 0.090 3.910 4 N -0.498 5.498 5 C 0.119 3.881 6 C -0.100 4.100 7 C -0.091 4.091 8 C -0.082 4.082 9 C -0.115 4.115 10 C 0.037 3.963 11 C -0.455 4.455 12 H 0.100 0.900 13 C 0.036 3.964 14 N -0.807 5.807 15 Si 0.989 3.011 16 H -0.250 1.250 17 H -0.265 1.265 18 H -0.266 1.266 19 C -0.002 4.002 20 N -0.500 5.500 21 C 0.139 3.861 22 F -0.146 7.146 23 C -0.076 4.076 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.191 0.809 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.296 0.704 33 H 0.158 0.842 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.212 4.281 -0.576 9.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.139 4.139 3 C -0.067 4.067 4 N -0.206 5.206 5 C -0.017 4.017 6 C -0.157 4.157 7 C -0.094 4.094 8 C -0.086 4.086 9 C -0.140 4.140 10 C 0.032 3.968 11 C -0.483 4.483 12 H 0.118 0.882 13 C -0.182 4.182 14 N -0.431 5.431 15 Si 0.809 3.191 16 H -0.173 1.173 17 H -0.189 1.189 18 H -0.191 1.191 19 C -0.164 4.164 20 N -0.212 5.212 21 C -0.014 4.014 22 F -0.125 7.125 23 C -0.102 4.102 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.208 0.792 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.175 0.825 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.281 5.148 0.023 8.917 hybrid contribution -0.618 -0.989 -0.947 1.503 sum -7.899 4.159 -0.924 8.975 Atomic orbital electron populations 1.20767 0.86995 1.04356 1.03717 1.21208 0.99573 0.92679 1.00489 1.23264 0.89107 0.98974 0.95384 1.67465 1.09396 1.30246 1.13522 1.21347 0.97191 0.87594 0.95596 1.20690 0.89029 1.03265 1.02738 1.19625 0.94473 0.92941 1.02377 1.19049 0.99227 0.95686 0.94667 1.21622 1.00639 0.95233 0.96509 1.18806 0.90410 0.93333 0.94248 1.19962 1.38889 0.97373 0.92046 0.88235 1.26920 0.91553 0.97810 1.01893 1.69836 1.31895 1.17689 1.23632 0.85030 0.78759 0.78776 0.76576 1.17349 1.18918 1.19089 1.22591 1.03027 0.99710 0.91097 1.66263 1.20885 1.02923 1.31084 1.17600 1.05816 0.91333 0.86624 1.91384 1.96077 1.68917 1.56164 1.21756 0.92143 0.99713 0.96539 0.89571 0.88873 0.91007 0.79205 0.90766 0.92084 0.89452 0.85386 0.89294 0.82510 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 10.03 71.24 0.71 -1.11 16 2 C -0.14 -3.85 5.89 -19.80 -0.12 -3.97 16 3 C 0.09 2.59 10.85 84.70 0.92 3.51 16 4 N -0.50 -17.89 10.26 -183.04 -1.88 -19.77 16 5 C 0.12 4.80 6.66 42.83 0.29 5.09 16 6 C -0.10 -3.87 9.66 71.24 0.69 -3.18 16 7 C -0.09 -3.84 5.03 -19.95 -0.10 -3.94 16 8 C -0.08 -3.88 4.65 -19.95 -0.09 -3.97 16 9 C -0.11 -5.67 8.52 23.12 0.20 -5.47 16 10 C 0.04 1.83 5.59 -21.21 -0.12 1.72 16 11 C -0.45 -21.41 9.08 23.45 0.21 -21.19 16 12 H 0.10 4.35 7.90 -2.91 -0.02 4.33 16 13 C 0.04 1.61 5.17 85.24 0.44 2.05 16 14 N -0.81 -37.75 10.92 21.82 0.24 -37.51 16 15 Si 0.99 33.20 29.59 68.60 2.03 35.23 16 16 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 17 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 18 H -0.27 -8.70 7.11 99.48 0.71 -8.00 16 19 C 0.00 -0.12 10.96 85.37 0.94 0.82 16 20 N -0.50 -25.16 10.33 -193.73 -2.00 -27.17 16 21 C 0.14 6.89 6.93 85.08 0.59 7.48 16 22 F -0.15 -7.00 15.55 44.97 0.70 -6.30 16 23 C -0.08 -2.68 9.58 22.68 0.22 -2.46 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.09 1.23 8.09 -2.38 -0.02 1.21 16 26 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 27 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.06 2.61 4.74 -2.39 -0.01 2.60 16 30 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 31 H 0.13 6.48 6.19 -2.91 -0.02 6.46 16 32 H 0.30 12.45 8.30 -92.71 -0.77 11.68 16 33 H 0.16 6.74 8.06 -2.91 -0.02 6.71 16 34 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -58.96 298.51 4.99 -53.97 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 1.13 Total: 26.17 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 4.77 Total: -24.63 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -3.64 Total: -84.44 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.70 Total: -6.30 kcal Atomic # 14 Polarization: 33.20 SS G_CDS: 2.03 Total: 35.23 kcal Total: -58.96 4.99 -53.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239905985.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.466 kcal (2) G-P(sol) polarization free energy of solvation -58.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds