Wall clock time and date at job start Mon Mar 30 2020 01:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38895 * 119.23845 * 2 1 4 4 C 1.36872 * 119.82500 * 179.97438 * 3 2 1 5 5 C 1.41120 * 118.40470 * 0.02562 * 4 3 2 6 6 C 1.40814 * 120.71898 * 180.02562 * 5 4 3 7 7 H 1.08006 * 120.00099 * 154.07497 * 6 5 4 8 8 C 1.40022 * 120.00313 * 334.07089 * 6 5 4 9 9 N 1.30804 * 119.99984 * 344.11188 * 8 6 5 10 10 Si 1.86804 * 119.99877 * 164.11569 * 8 6 5 11 11 H 1.48504 * 109.46931 * 90.00324 * 10 8 6 12 12 H 1.48506 * 109.46893 * 209.99912 * 10 8 6 13 13 H 1.48501 * 109.47302 * 329.99943 * 10 8 6 14 14 C 1.41978 * 118.55532 * 359.97438 * 5 4 3 15 15 C 1.47539 * 120.00868 * 179.97438 * 14 5 4 16 16 C 1.39868 * 120.09047 * 309.48353 * 15 14 5 17 17 C 1.37590 * 119.94672 * 179.74225 * 16 15 14 18 18 C 1.39303 * 120.13278 * 0.53003 * 17 16 15 19 19 N 1.39221 * 119.90228 * 179.72376 * 18 17 16 20 20 C 1.39087 * 120.19003 * 359.74078 * 18 17 16 21 21 C 1.37946 * 120.04805 * 359.97438 * 20 18 17 22 22 F 1.35104 * 120.06811 * 179.97438 * 21 20 18 23 23 N 1.31721 * 119.23951 * 179.73770 * 2 1 3 24 24 H 1.08997 * 109.47580 * 89.99770 * 1 2 3 25 25 H 1.09003 * 109.46562 * 210.00125 * 1 2 3 26 26 H 1.09001 * 109.46910 * 329.99242 * 1 2 3 27 27 H 1.07996 * 120.08890 * 0.02562 * 3 2 1 28 28 H 1.07994 * 120.79778 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00159 * 179.97438 * 9 8 6 30 30 H 1.08003 * 120.03081 * 0.02562 * 16 15 14 31 31 H 1.08000 * 119.93815 * 180.27071 * 17 16 15 32 32 H 0.97004 * 119.99394 * 180.02562 * 19 18 17 33 33 H 0.96994 * 120.00430 * 0.02562 * 19 18 17 34 34 H 1.07993 * 119.97970 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2120 0.0000 4 6 3.5541 1.2260 0.0005 5 6 4.2381 -0.0084 0.0005 6 6 5.6456 -0.0508 0.0016 7 1 6.1597 -0.9081 0.4105 8 6 6.3787 1.0183 -0.5276 9 7 5.7891 1.9006 -1.2924 10 14 8.1988 1.1846 -0.1413 11 1 8.9907 0.4584 -1.1664 12 1 8.5773 2.6206 -0.1492 13 1 8.4753 0.6071 1.1986 14 6 3.4762 -1.2064 0.0005 15 6 4.1583 -2.5146 -0.0001 16 6 5.1645 -2.7804 -0.9346 17 6 5.8023 -3.9996 -0.9291 18 6 5.4405 -4.9739 -0.0016 19 7 6.0851 -6.2079 -0.0040 20 6 4.4368 -4.7177 0.9266 21 6 3.7963 -3.4960 0.9317 22 9 2.8209 -3.2468 1.8327 23 7 2.1504 -1.1494 0.0053 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5140 27 1 1.6345 2.1409 0.0004 28 1 4.0975 2.1593 0.0010 29 1 6.2969 2.6415 -1.6587 30 1 5.4438 -2.0277 -1.6570 31 1 6.5823 -4.2031 -1.6479 32 1 5.8339 -6.8875 0.6409 33 1 6.7853 -6.3881 -0.6506 34 1 4.1593 -5.4754 1.6443 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240525609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:52 Heat of formation + Delta-G solvation = -23.969881 kcal Electronic energy + Delta-G solvation = -20239.368782 eV Core-core repulsion = 17049.592343 eV Total energy + Delta-G solvation = -3189.776440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.63324 -40.59222 -39.54937 -36.17252 -35.47777 -33.02770 -32.53586 -31.41133 -29.72534 -28.99412 -25.95196 -23.99485 -23.71750 -22.44122 -21.79232 -19.23492 -18.57267 -18.05724 -17.37649 -17.20015 -16.44507 -16.27004 -15.90737 -15.88217 -15.64906 -14.86322 -14.77004 -14.30772 -13.97901 -13.75855 -13.68191 -13.44001 -13.23083 -13.06016 -12.80695 -12.64896 -12.59506 -12.15424 -12.08779 -11.62909 -11.24073 -11.12631 -10.12993 -9.87430 -9.65231 -9.37785 -8.71639 -8.21303 -6.33300 0.32346 0.48297 0.90107 1.19546 1.39012 1.49238 1.55135 2.18509 2.71598 2.89533 2.96170 3.64325 3.71430 3.88261 4.03330 4.27398 4.38830 4.50481 4.64417 4.67444 4.87452 4.95657 4.97455 4.99600 5.13632 5.22141 5.27909 5.32524 5.37527 5.52537 5.72101 5.84022 5.96250 6.07027 6.11406 6.53256 6.62654 6.77081 6.85164 7.09918 7.79256 8.25048 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012136 B = 0.009358 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.550456 B = 2991.374200 C = 4928.321051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.026 4.026 3 C -0.149 4.149 4 C -0.154 4.154 5 C 0.052 3.948 6 C -0.456 4.456 7 H 0.083 0.917 8 C 0.039 3.961 9 N -0.815 5.815 10 Si 0.978 3.022 11 H -0.255 1.255 12 H -0.266 1.266 13 H -0.261 1.261 14 C 0.010 3.990 15 C -0.104 4.104 16 C -0.027 4.027 17 C -0.207 4.207 18 C 0.244 3.756 19 N -0.854 5.854 20 C -0.243 4.243 21 C 0.127 3.873 22 F -0.152 7.152 23 N -0.469 5.469 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.292 0.708 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.409 0.591 33 H 0.412 0.588 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -9.327 0.518 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.167 4.167 3 C -0.169 4.169 4 C -0.180 4.180 5 C 0.048 3.952 6 C -0.485 4.485 7 H 0.101 0.899 8 C -0.177 4.177 9 N -0.440 5.440 10 Si 0.798 3.202 11 H -0.179 1.179 12 H -0.191 1.191 13 H -0.185 1.185 14 C -0.129 4.129 15 C -0.108 4.108 16 C -0.047 4.047 17 C -0.229 4.229 18 C 0.137 3.863 19 N -0.394 5.394 20 C -0.267 4.267 21 C 0.107 3.893 22 F -0.130 7.130 23 N -0.178 5.178 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.143 0.857 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.137 0.863 31 H 0.170 0.830 32 H 0.239 0.761 33 H 0.242 0.758 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.160 -9.848 0.404 10.351 hybrid contribution 0.888 1.208 0.242 1.519 sum 4.048 -8.640 0.646 9.563 Atomic orbital electron populations 1.20318 0.88323 1.02121 1.01680 1.21060 0.97209 0.88207 1.10266 1.21532 0.95007 0.98399 1.01968 1.21429 0.93634 0.98361 1.04585 1.18696 0.95117 0.91366 0.90018 1.19611 0.90837 1.03872 1.34134 0.89871 1.26786 1.05678 0.93475 0.91809 1.69825 1.40750 1.11453 1.21989 0.85252 0.76028 0.78784 0.80129 1.17880 1.19070 1.18512 1.19755 0.88537 0.92266 1.12294 1.18358 1.00869 0.92421 0.99145 1.20882 0.92280 0.96188 0.95312 1.20724 1.05580 0.93192 1.03445 1.17376 0.89991 0.87224 0.91744 1.42184 1.43155 1.12560 1.41522 1.20382 1.03220 0.96972 1.06130 1.17821 0.88049 0.94744 0.88707 1.91400 1.60966 1.94937 1.65716 1.67042 1.09932 1.30135 1.10645 0.91839 0.92574 0.90341 0.85668 0.86533 0.89664 0.86350 0.82989 0.76106 0.75754 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.50 10.15 71.24 0.72 -1.77 16 2 C -0.03 -1.28 6.79 42.73 0.29 -0.99 16 3 C -0.15 -7.22 9.64 22.11 0.21 -7.01 16 4 C -0.15 -8.26 8.73 22.66 0.20 -8.06 16 5 C 0.05 2.89 5.57 -21.02 -0.12 2.78 16 6 C -0.46 -23.71 7.17 23.33 0.17 -23.55 16 7 H 0.08 4.25 6.63 -2.91 -0.02 4.23 16 8 C 0.04 1.88 5.19 85.28 0.44 2.32 16 9 N -0.82 -40.62 10.97 21.84 0.24 -40.39 16 10 Si 0.98 36.34 29.59 68.60 2.03 38.37 16 11 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 12 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 13 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 14 C 0.01 0.54 6.11 42.39 0.26 0.80 16 15 C -0.10 -4.92 5.05 -19.98 -0.10 -5.02 16 16 C -0.03 -1.10 7.98 22.51 0.18 -0.92 16 17 C -0.21 -6.46 9.87 22.37 0.22 -6.24 16 18 C 0.24 6.83 6.75 38.43 0.26 7.09 16 19 N -0.85 -14.65 9.06 -51.30 -0.46 -15.11 16 20 C -0.24 -8.01 9.85 22.40 0.22 -7.79 16 21 C 0.13 5.49 7.25 22.65 0.16 5.65 16 22 F -0.15 -7.07 16.47 44.97 0.74 -6.33 16 23 N -0.47 -24.99 9.72 -171.23 -1.66 -26.66 16 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.08 2.47 8.07 -2.39 -0.02 2.45 16 27 H 0.13 5.16 8.06 -2.91 -0.02 5.14 16 28 H 0.12 6.29 6.30 -2.91 -0.02 6.27 16 29 H 0.29 13.08 8.30 -92.71 -0.77 12.32 16 30 H 0.12 5.20 7.34 -2.91 -0.02 5.17 16 31 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 32 H 0.41 5.24 8.83 -92.71 -0.82 4.42 16 33 H 0.41 5.08 8.83 -92.71 -0.82 4.26 16 34 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -66.27 298.00 3.53 -62.75 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.47 Total: 30.08 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 3.12 Total: -42.72 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -1.89 Total: -82.16 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.74 Total: -6.33 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -66.27 3.53 -62.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240525609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.778 kcal (2) G-P(sol) polarization free energy of solvation -66.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds