Wall clock time and date at job start Mon Mar 30 2020 01:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31254 * 119.79371 * 2 1 4 4 C 1.33116 * 121.70578 * 180.02562 * 3 2 1 5 5 C 1.47708 * 119.45954 * 180.02562 * 4 3 2 6 6 C 1.39791 * 120.08882 * 186.70618 * 5 4 3 7 7 C 1.37611 * 119.95649 * 180.02562 * 6 5 4 8 8 C 1.39275 * 120.12954 * 0.02562 * 7 6 5 9 9 N 1.39257 * 119.91103 * 180.02562 * 8 7 6 10 10 C 1.39070 * 120.17645 * 359.97438 * 8 7 6 11 11 C 1.37974 * 120.04181 * 359.76539 * 10 8 7 12 12 F 1.35098 * 120.06564 * 180.25244 * 11 10 8 13 13 C 1.40036 * 121.07912 * 0.04101 * 4 3 2 14 14 C 1.36507 * 119.46155 * 359.97438 * 13 4 3 15 15 C 1.40955 * 119.79437 * 180.02562 * 2 1 3 16 16 C 1.41003 * 120.54270 * 0.25369 * 15 2 1 17 17 H 1.07993 * 119.99946 * 336.59111 * 16 15 2 18 18 C 1.39970 * 119.99793 * 156.59621 * 16 15 2 19 19 N 1.30826 * 119.99952 * 343.21350 * 18 16 15 20 20 Si 1.86797 * 119.99670 * 163.21663 * 18 16 15 21 21 H 1.48495 * 109.47378 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47077 * 119.99748 * 20 18 16 23 23 H 1.48497 * 109.47005 * 239.99472 * 20 18 16 24 24 H 1.09002 * 109.47026 * 269.95708 * 1 2 3 25 25 H 1.09000 * 109.46937 * 29.95410 * 1 2 3 26 26 H 1.08998 * 109.47366 * 149.95233 * 1 2 3 27 27 H 1.07999 * 120.02091 * 0.02603 * 6 5 4 28 28 H 1.08005 * 119.93732 * 179.97438 * 7 6 5 29 29 H 0.97002 * 120.00264 * 359.97438 * 9 8 7 30 30 H 0.97003 * 119.99572 * 180.02562 * 9 8 7 31 31 H 1.07996 * 119.98267 * 180.02562 * 10 8 7 32 32 H 1.08003 * 120.26996 * 179.97438 * 13 4 3 33 33 H 1.08003 * 120.78605 * 179.97438 * 14 13 4 34 34 H 0.97001 * 120.00169 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1390 0.0000 4 6 3.4896 1.1835 -0.0005 5 6 4.1727 2.4931 0.0001 6 6 5.5619 2.5590 -0.1417 7 6 6.1955 3.7805 -0.1402 8 6 5.4556 4.9518 0.0028 9 7 6.1015 6.1855 0.0031 10 6 4.0734 4.8925 0.1442 11 6 3.4301 3.6720 0.1384 12 9 2.0869 3.6142 0.2706 13 6 4.2521 0.0089 -0.0019 14 6 3.6208 -1.2014 -0.0023 15 6 2.2074 -1.2232 -0.0005 16 6 1.5096 -2.4485 -0.0065 17 1 0.4951 -2.4939 0.3611 18 6 2.1318 -3.6059 -0.4886 19 7 3.2090 -3.5111 -1.2250 20 14 1.4240 -5.2857 -0.0808 21 1 0.2119 -5.1211 0.7612 22 1 1.0623 -5.9889 -1.3377 23 1 2.4354 -6.0827 0.6588 24 1 -0.3633 -0.0008 1.0277 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3634 -0.8895 -0.5146 27 1 6.1374 1.6518 -0.2523 28 1 7.2689 3.8310 -0.2493 29 1 7.0655 6.2283 -0.0958 30 1 5.5874 7.0020 0.1030 31 1 3.5027 5.8027 0.2545 32 1 5.3309 0.0602 -0.0027 33 1 4.1878 -2.1206 -0.0038 34 1 3.6400 -4.3131 -1.5595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240525687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:54 Heat of formation + Delta-G solvation = -18.414812 kcal Electronic energy + Delta-G solvation = -19771.903428 eV Core-core repulsion = 16582.367874 eV Total energy + Delta-G solvation = -3189.535554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.48601 -40.58981 -39.62383 -36.27142 -35.31303 -33.39108 -32.50438 -31.42502 -29.69557 -28.72854 -26.36344 -24.04378 -23.79628 -22.23799 -21.66512 -19.26531 -18.62182 -18.10467 -17.40776 -17.02842 -16.51390 -16.30878 -15.91961 -15.78156 -15.57417 -14.88019 -14.72184 -14.49320 -13.83837 -13.77637 -13.52244 -13.43579 -13.32381 -13.01943 -12.95391 -12.63014 -12.59238 -12.17709 -12.02598 -11.55478 -11.46082 -11.10538 -10.14018 -9.82593 -9.67862 -9.49531 -8.73739 -8.22105 -6.32684 0.14554 0.42548 0.99999 1.18255 1.40133 1.55212 1.58527 2.17680 2.62117 2.95105 2.99547 3.71592 3.74079 3.79202 3.96510 4.20125 4.36720 4.43769 4.60019 4.70153 4.87172 4.91368 4.97252 5.02583 5.11401 5.17633 5.27307 5.34156 5.37937 5.53307 5.60438 5.83508 5.94811 6.06614 6.07722 6.50500 6.60021 6.73177 6.82353 7.06923 7.79934 8.20348 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.004537 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.668554 B = 6170.008655 C = 6885.292402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.022 4.022 3 N -0.462 5.462 4 C 0.000 4.000 5 C -0.119 4.119 6 C -0.053 4.053 7 C -0.198 4.198 8 C 0.238 3.762 9 N -0.856 5.856 10 C -0.243 4.243 11 C 0.127 3.873 12 F -0.141 7.141 13 C -0.136 4.136 14 C -0.162 4.162 15 C 0.039 3.961 16 C -0.460 4.460 17 H 0.092 0.908 18 C 0.034 3.966 19 N -0.811 5.811 20 Si 0.989 3.011 21 H -0.254 1.254 22 H -0.264 1.264 23 H -0.263 1.263 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.139 0.861 28 H 0.159 0.841 29 H 0.412 0.588 30 H 0.408 0.592 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.756 10.110 1.546 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.167 4.167 3 N -0.171 5.171 4 C -0.136 4.136 5 C -0.123 4.123 6 C -0.073 4.073 7 C -0.221 4.221 8 C 0.130 3.870 9 N -0.396 5.396 10 C -0.267 4.267 11 C 0.106 3.894 12 F -0.119 7.119 13 C -0.156 4.156 14 C -0.188 4.188 15 C 0.035 3.965 16 C -0.488 4.488 17 H 0.110 0.890 18 C -0.183 4.183 19 N -0.435 5.435 20 Si 0.809 3.191 21 H -0.177 1.177 22 H -0.189 1.189 23 H -0.188 1.188 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.156 0.844 28 H 0.176 0.824 29 H 0.243 0.757 30 H 0.238 0.762 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.415 10.740 1.403 12.588 hybrid contribution 0.024 -1.380 0.011 1.380 sum 6.438 9.359 1.414 11.448 Atomic orbital electron populations 1.20207 0.89182 1.01415 1.01129 1.21562 0.96866 0.88047 1.10177 1.67059 1.09344 1.30278 1.10433 1.19278 0.89053 0.92244 1.12998 1.18687 0.94237 0.90089 1.09291 1.20986 0.91242 0.99045 0.95994 1.20763 1.00975 0.89905 1.10431 1.17451 0.89966 0.87713 0.91838 1.42236 1.10755 1.03908 1.82661 1.20461 0.94449 0.96193 1.15574 1.17803 0.76955 0.94041 1.00585 1.91463 1.30432 1.97263 1.92779 1.21517 0.99903 0.92726 1.01443 1.21413 0.94889 0.97142 1.05307 1.18773 0.93239 0.94086 0.90426 1.19921 1.01207 0.92379 1.35317 0.88981 1.26943 0.94417 1.05434 0.91545 1.69847 1.17559 1.33539 1.22552 0.85043 0.79523 0.75248 0.79303 1.17721 1.18910 1.18785 0.92229 0.92716 0.91234 0.84355 0.82355 0.75679 0.76231 0.83737 0.85366 0.86110 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.79 9.58 71.24 0.68 -2.11 16 2 C -0.02 -1.20 6.86 43.31 0.30 -0.91 16 3 N -0.46 -24.96 8.22 -171.04 -1.41 -26.37 16 4 C 0.00 -0.02 6.72 41.89 0.28 0.26 16 5 C -0.12 -5.03 5.88 -19.97 -0.12 -5.15 16 6 C -0.05 -1.74 9.39 22.50 0.21 -1.53 16 7 C -0.20 -4.95 9.87 22.37 0.22 -4.73 16 8 C 0.24 5.72 6.75 38.41 0.26 5.98 16 9 N -0.86 -12.11 9.07 -51.31 -0.47 -12.58 16 10 C -0.24 -7.31 9.85 22.41 0.22 -7.09 16 11 C 0.13 5.10 7.27 22.64 0.16 5.26 16 12 F -0.14 -6.41 15.31 44.97 0.69 -5.72 16 13 C -0.14 -6.65 9.37 22.30 0.21 -6.44 16 14 C -0.16 -8.68 8.74 22.63 0.20 -8.49 16 15 C 0.04 2.17 5.60 -21.17 -0.12 2.05 16 16 C -0.46 -23.87 8.19 23.37 0.19 -23.67 16 17 H 0.09 4.52 6.77 -2.91 -0.02 4.50 16 18 C 0.03 1.62 5.19 85.26 0.44 2.06 16 19 N -0.81 -40.47 10.83 21.83 0.24 -40.23 16 20 Si 0.99 36.02 29.59 68.60 2.03 38.05 16 21 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 24 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.07 3.01 6.72 -2.39 -0.02 2.99 16 27 H 0.14 4.16 6.20 -2.91 -0.02 4.14 16 28 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.41 3.75 8.83 -92.71 -0.82 2.93 16 30 H 0.41 4.33 8.83 -92.71 -0.82 3.51 16 31 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.13 5.29 6.20 -2.91 -0.02 5.27 16 33 H 0.12 6.49 6.12 -2.91 -0.02 6.47 16 34 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 Total: -1.00 -67.31 293.97 3.76 -63.54 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.46 Total: 27.81 kcal Atomic # 6 Polarization: -47.64 SS G_CDS: 3.14 Total: -44.49 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.64 Total: -79.18 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.69 Total: -5.72 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Total: -67.31 3.76 -63.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240525687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.127 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds