Wall clock time and date at job start Mon Mar 30 2020 00:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30714 * 1 3 3 Si 1.86802 * 119.99836 * 2 1 4 4 H 1.48490 * 109.47062 * 239.99813 * 3 2 1 5 5 H 1.48507 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47072 * 119.99290 * 3 2 1 7 7 C 1.40137 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.40735 * 120.00187 * 0.02562 * 7 2 1 10 10 N 1.33961 * 120.28916 * 359.72388 * 9 7 2 11 11 C 1.31635 * 119.90590 * 180.27328 * 10 9 7 12 12 C 1.39150 * 120.52090 * 359.97438 * 11 10 9 13 13 N 1.32040 * 120.60099 * 0.02562 * 12 11 10 14 14 C 1.32901 * 120.06994 * 0.02562 * 13 12 11 15 15 C 1.47683 * 120.25987 * 179.97438 * 14 13 12 16 16 C 1.41220 * 126.40231 * 144.70610 * 15 14 13 17 17 N 1.30494 * 108.08597 * 179.88440 * 16 15 14 18 18 N 1.39942 * 108.90687 * 0.37846 * 17 16 15 19 19 C 1.46498 * 125.78829 * 179.71862 * 18 17 16 20 20 C 1.54031 * 113.81698 * 193.55216 * 19 18 17 21 21 O 1.44446 * 85.42129 * 223.23484 * 20 19 18 22 22 C 1.44166 * 93.38193 * 24.09306 * 21 20 19 23 23 C 1.34546 * 108.42920 * 359.75837 * 18 17 16 24 24 H 0.96995 * 120.00324 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.73974 * 179.97438 * 11 10 9 26 26 H 1.07996 * 119.69951 * 180.02562 * 12 11 10 27 27 H 1.08005 * 125.96001 * 0.02562 * 16 15 14 28 28 H 1.08998 * 112.99378 * 325.38157 * 19 18 17 29 29 H 1.08990 * 113.86678 * 337.34540 * 20 19 18 30 30 H 1.09004 * 113.86325 * 109.05286 * 20 19 18 31 31 H 1.09008 * 113.86520 * 221.76572 * 22 21 20 32 32 H 1.09000 * 113.86903 * 90.05732 * 22 21 20 33 33 H 1.07999 * 126.31078 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 3.0948 1.6964 -1.2124 5 1 1.2760 2.7465 -0.0006 6 1 3.0947 1.6965 1.2126 7 6 2.0078 -1.2136 0.0005 8 1 3.0878 -1.2135 0.0010 9 6 1.3042 -2.4325 0.0005 10 7 -0.0354 -2.4393 0.0056 11 6 -0.6858 -3.5837 0.0110 12 6 0.0071 -4.7904 0.0110 13 7 1.3274 -4.8073 0.0060 14 6 2.0080 -3.6658 0.0016 15 6 3.4848 -3.6799 -0.0034 16 6 4.3294 -2.7615 -0.6647 17 7 5.5658 -3.1061 -0.4293 18 7 5.5720 -4.2508 0.3757 19 6 6.7642 -4.9537 0.8562 20 6 6.4711 -6.3497 1.4376 21 8 7.3890 -5.9773 2.4889 22 6 7.1808 -4.5651 2.2873 23 6 4.2975 -4.5970 0.6327 24 1 -0.4850 0.8400 -0.0004 25 1 -1.7657 -3.5861 0.0155 26 1 -0.5399 -5.7215 0.0150 27 1 4.0082 -1.9192 -1.2596 28 1 7.5851 -4.9388 0.1394 29 1 5.4430 -6.4798 1.7752 30 1 6.8237 -7.1704 0.8129 31 1 8.0950 -3.9733 2.3351 32 1 6.3698 -4.1490 2.8851 33 1 3.9705 -5.4375 1.2268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240769832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:13 Heat of formation + Delta-G solvation = 119.395256 kcal Electronic energy + Delta-G solvation = -20079.948243 eV Core-core repulsion = 16916.308543 eV Total energy + Delta-G solvation = -3163.639699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19894 -39.77232 -38.63638 -34.15090 -32.89530 -32.01318 -30.80115 -29.00321 -27.54348 -26.86119 -26.08309 -23.34064 -21.93755 -21.55585 -20.19464 -19.31749 -17.63577 -17.51169 -16.69865 -16.03712 -15.93578 -15.00639 -14.89015 -14.37624 -14.18572 -14.00373 -13.29922 -13.09504 -12.85229 -12.63891 -12.05651 -11.76515 -11.68206 -11.56340 -11.47250 -11.36555 -10.64001 -10.36680 -10.14424 -9.97454 -9.86825 -9.54371 -9.20631 -8.87644 -8.38404 -7.49548 -7.21257 -6.55602 -4.69234 2.12176 2.53588 2.77094 2.86149 2.99211 3.01668 3.14794 3.30467 3.71727 3.79987 3.95071 4.61101 4.64509 4.73512 5.04189 5.21736 5.28178 5.43801 5.59781 5.63192 5.73207 5.74823 5.84547 6.01709 6.20043 6.30444 6.48501 6.64414 6.87726 6.99394 7.14558 7.24701 7.48189 7.66160 7.99195 8.25715 8.36828 8.63420 9.23050 9.82446 10.06167 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.006131 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.860893 B = 4565.572470 C = 5782.736008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.408 4.408 8 H 0.102 0.898 9 C 0.220 3.780 10 N -0.455 5.455 11 C 0.082 3.918 12 C -0.120 4.120 13 N -0.423 5.423 14 C 0.017 3.983 15 C -0.116 4.116 16 C 0.071 3.929 17 N -0.314 5.314 18 N -0.378 5.378 19 C 0.104 3.896 20 C 0.033 3.967 21 O -0.374 6.374 22 C 0.028 3.972 23 C 0.044 3.956 24 H 0.278 0.722 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.194 0.806 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.505 -4.564 1.678 9.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.162 4.162 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.439 4.439 8 H 0.119 0.881 9 C 0.094 3.906 10 N -0.171 5.171 11 C -0.088 4.088 12 C -0.280 4.280 13 N -0.135 5.135 14 C -0.132 4.132 15 C -0.129 4.129 16 C -0.116 4.116 17 N -0.134 5.134 18 N -0.163 5.163 19 C 0.000 4.000 20 C -0.045 4.045 21 O -0.292 6.292 22 C -0.050 4.050 23 C -0.101 4.101 24 H 0.090 0.910 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.210 0.790 28 H 0.146 0.854 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.770 -4.349 1.708 10.830 hybrid contribution -0.882 0.533 0.071 1.033 sum 8.888 -3.815 1.778 9.834 Atomic orbital electron populations 1.70079 1.07430 1.28639 1.26239 1.26217 0.94965 1.01504 0.93534 0.86357 0.80212 0.79952 0.80421 1.18372 1.19966 1.18605 1.19911 0.95332 0.89008 1.39655 0.88076 1.19207 0.88892 0.92342 0.90120 1.69565 1.07460 1.24835 1.15256 1.23484 0.99943 0.90413 0.94985 1.22491 0.90656 0.97656 1.17201 1.67671 1.08490 1.29984 1.07387 1.19415 0.90326 0.89933 1.13491 1.18656 0.91886 0.97689 1.04639 1.24288 0.88891 0.99577 0.98823 1.77019 1.21854 1.00934 1.13603 1.48153 1.04415 1.22539 1.41235 1.24729 0.87736 0.91178 0.96351 1.24547 0.95852 0.96236 0.87888 1.89775 1.61842 1.19967 1.57580 1.24584 1.02510 0.84215 0.93680 1.22651 0.83346 1.01229 1.02844 0.91030 0.85437 0.85696 0.78992 0.85428 0.88698 0.87605 0.87955 0.89133 0.81412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.66 11.48 55.56 0.64 -17.03 16 2 C 0.07 1.56 5.50 -17.31 -0.10 1.46 16 3 Si 0.91 17.51 29.56 -169.99 -5.03 12.48 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.41 -10.15 8.17 -37.93 -0.31 -10.46 16 8 H 0.10 2.33 4.32 -52.49 -0.23 2.10 16 9 C 0.22 5.77 6.57 -84.55 -0.56 5.21 16 10 N -0.45 -12.10 8.03 -10.73 -0.09 -12.18 16 11 C 0.08 1.92 11.21 -17.30 -0.19 1.72 16 12 C -0.12 -2.71 11.22 -17.12 -0.19 -2.90 16 13 N -0.42 -10.13 10.39 -8.98 -0.09 -10.23 16 14 C 0.02 0.42 6.73 -82.11 -0.55 -0.13 16 15 C -0.12 -2.50 5.64 -104.97 -0.59 -3.09 16 16 C 0.07 1.43 9.81 -16.99 -0.17 1.26 16 17 N -0.31 -5.87 12.50 30.85 0.39 -5.49 16 18 N -0.38 -6.18 3.79 -60.70 -0.23 -6.41 16 19 C 0.10 1.26 5.26 -66.85 -0.35 0.90 16 20 C 0.03 0.34 8.61 37.64 0.32 0.67 16 21 O -0.37 -4.52 12.46 -35.23 -0.44 -4.96 16 22 C 0.03 0.32 9.02 37.64 0.34 0.66 16 23 C 0.04 0.80 10.67 -16.42 -0.18 0.63 16 24 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 25 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 26 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 27 H 0.19 3.73 6.57 -52.48 -0.34 3.39 16 28 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.10 1.00 6.27 -51.93 -0.33 0.67 16 30 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 0.97 8.14 -51.92 -0.42 0.54 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.17 2.69 6.66 -52.49 -0.35 2.34 16 LS Contribution 288.75 15.07 4.35 4.35 Total: -1.00 -30.27 288.75 -5.94 -36.21 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -2.92 Total: 7.31 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.52 Total: -4.06 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.61 Total: -51.34 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.44 Total: -4.96 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.27 -5.94 -36.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240769832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.606 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds