Wall clock time and date at job start Mon Mar 30 2020 00:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30714 * 1 3 3 Si 1.86802 * 119.99836 * 2 1 4 4 H 1.48490 * 109.47062 * 239.99813 * 3 2 1 5 5 H 1.48507 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47072 * 119.99290 * 3 2 1 7 7 C 1.40137 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.40735 * 120.00187 * 0.02562 * 7 2 1 10 10 N 1.33961 * 120.28916 * 359.72388 * 9 7 2 11 11 C 1.31635 * 119.90590 * 180.27328 * 10 9 7 12 12 C 1.39150 * 120.52090 * 359.97438 * 11 10 9 13 13 N 1.32040 * 120.60099 * 0.02562 * 12 11 10 14 14 C 1.32901 * 120.06994 * 0.02562 * 13 12 11 15 15 C 1.47683 * 120.25987 * 179.97438 * 14 13 12 16 16 C 1.41220 * 126.40231 * 144.70610 * 15 14 13 17 17 N 1.30494 * 108.08597 * 179.88440 * 16 15 14 18 18 N 1.39942 * 108.90687 * 0.37846 * 17 16 15 19 19 C 1.46498 * 125.78829 * 179.71862 * 18 17 16 20 20 C 1.54031 * 113.81698 * 193.55216 * 19 18 17 21 21 O 1.44446 * 85.42129 * 223.23484 * 20 19 18 22 22 C 1.44166 * 93.38193 * 24.09306 * 21 20 19 23 23 C 1.34546 * 108.42920 * 359.75837 * 18 17 16 24 24 H 0.96995 * 120.00324 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.73974 * 179.97438 * 11 10 9 26 26 H 1.07996 * 119.69951 * 180.02562 * 12 11 10 27 27 H 1.08005 * 125.96001 * 0.02562 * 16 15 14 28 28 H 1.08998 * 112.99378 * 325.38157 * 19 18 17 29 29 H 1.08990 * 113.86678 * 337.34540 * 20 19 18 30 30 H 1.09004 * 113.86325 * 109.05286 * 20 19 18 31 31 H 1.09008 * 113.86520 * 221.76572 * 22 21 20 32 32 H 1.09000 * 113.86903 * 90.05732 * 22 21 20 33 33 H 1.07999 * 126.31078 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 3.0948 1.6964 -1.2124 5 1 1.2760 2.7465 -0.0006 6 1 3.0947 1.6965 1.2126 7 6 2.0078 -1.2136 0.0005 8 1 3.0878 -1.2135 0.0010 9 6 1.3042 -2.4325 0.0005 10 7 -0.0354 -2.4393 0.0056 11 6 -0.6858 -3.5837 0.0110 12 6 0.0071 -4.7904 0.0110 13 7 1.3274 -4.8073 0.0060 14 6 2.0080 -3.6658 0.0016 15 6 3.4848 -3.6799 -0.0034 16 6 4.3294 -2.7615 -0.6647 17 7 5.5658 -3.1061 -0.4293 18 7 5.5720 -4.2508 0.3757 19 6 6.7642 -4.9537 0.8562 20 6 6.4711 -6.3497 1.4376 21 8 7.3890 -5.9773 2.4889 22 6 7.1808 -4.5651 2.2873 23 6 4.2975 -4.5970 0.6327 24 1 -0.4850 0.8400 -0.0004 25 1 -1.7657 -3.5861 0.0155 26 1 -0.5399 -5.7215 0.0150 27 1 4.0082 -1.9192 -1.2596 28 1 7.5851 -4.9388 0.1394 29 1 5.4430 -6.4798 1.7752 30 1 6.8237 -7.1704 0.8129 31 1 8.0950 -3.9733 2.3351 32 1 6.3698 -4.1490 2.8851 33 1 3.9705 -5.4375 1.2268 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240769832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:12 Heat of formation + Delta-G solvation = 98.192252 kcal Electronic energy + Delta-G solvation = -20080.867674 eV Core-core repulsion = 16916.308543 eV Total energy + Delta-G solvation = -3164.559130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.42374 -41.02706 -40.33644 -35.93767 -34.39176 -33.65172 -32.46141 -30.45673 -28.84106 -27.94345 -27.67001 -24.91572 -23.73521 -22.93983 -21.63694 -20.59676 -19.43485 -18.78856 -17.71422 -17.58127 -17.00410 -16.73107 -16.41802 -15.90073 -15.53967 -15.50293 -14.74573 -14.60915 -14.19812 -13.97675 -13.46499 -13.36157 -13.17291 -12.95436 -12.70694 -12.63488 -12.18737 -11.96797 -11.71082 -11.56844 -11.40554 -10.99711 -10.90048 -10.28257 -10.07942 -9.30987 -8.87329 -8.33643 -6.53139 0.48616 0.94041 1.14305 1.41563 1.51748 1.53053 1.56610 2.08092 2.19443 2.41733 2.82736 2.97829 3.71236 3.78310 3.85573 3.94193 4.03767 4.11596 4.25393 4.28827 4.46695 4.55209 4.66170 4.76263 4.79097 4.82574 4.86915 5.00099 5.14785 5.26763 5.41345 5.70529 5.88175 6.11011 6.18637 6.55793 6.77991 6.80648 7.40672 7.99426 8.32562 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.006131 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.860893 B = 4565.572470 C = 5782.736008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.024 3.976 3 Si 0.979 3.021 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.430 4.430 8 H 0.112 0.888 9 C 0.186 3.814 10 N -0.491 5.491 11 C 0.066 3.934 12 C -0.121 4.121 13 N -0.435 5.435 14 C 0.012 3.988 15 C -0.160 4.160 16 C 0.062 3.938 17 N -0.318 5.318 18 N -0.363 5.363 19 C 0.090 3.910 20 C 0.038 3.962 21 O -0.384 6.384 22 C 0.032 3.968 23 C 0.066 3.934 24 H 0.284 0.716 25 H 0.155 0.845 26 H 0.159 0.841 27 H 0.189 0.811 28 H 0.147 0.853 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.278 -5.176 2.036 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.461 4.461 8 H 0.129 0.871 9 C 0.061 3.939 10 N -0.208 5.208 11 C -0.103 4.103 12 C -0.280 4.280 13 N -0.148 5.148 14 C -0.137 4.137 15 C -0.172 4.172 16 C -0.124 4.124 17 N -0.139 5.139 18 N -0.147 5.147 19 C -0.012 4.012 20 C -0.039 4.039 21 O -0.302 6.302 22 C -0.046 4.046 23 C -0.081 4.081 24 H 0.095 0.905 25 H 0.172 0.828 26 H 0.176 0.824 27 H 0.206 0.794 28 H 0.164 0.836 29 H 0.113 0.887 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.099 0.901 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.560 -4.990 2.064 12.760 hybrid contribution -1.376 0.546 0.000 1.480 sum 10.185 -4.444 2.064 11.302 Atomic orbital electron populations 1.70167 1.09049 1.29862 1.27262 1.27097 0.95663 1.04682 0.92529 0.85282 0.78861 0.75422 0.80552 1.17433 1.19132 1.18429 1.20256 0.96015 0.89482 1.40313 0.87089 1.19671 0.89297 0.93752 0.91195 1.69508 1.08137 1.26513 1.16656 1.23958 1.01320 0.90192 0.94812 1.23029 0.90604 0.98764 1.15624 1.67760 1.09078 1.29784 1.08178 1.19770 0.91932 0.89546 1.12429 1.18708 0.90961 1.00017 1.07549 1.24196 0.89193 0.99703 0.99310 1.76969 1.20980 1.01877 1.14107 1.48509 1.05195 1.21526 1.39475 1.25295 0.86716 0.91975 0.97205 1.24694 0.95911 0.95930 0.87386 1.89785 1.62168 1.20203 1.58077 1.24603 1.03194 0.84305 0.92459 1.22846 0.83617 1.00421 1.01242 0.90492 0.82813 0.82359 0.79407 0.83560 0.88698 0.84903 0.85905 0.90081 0.79390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.18 11.48 21.86 0.25 -37.93 16 2 C 0.02 1.17 5.50 85.32 0.47 1.64 16 3 Si 0.98 36.00 29.56 68.60 2.03 38.03 16 4 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 5 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 7 C -0.43 -21.91 8.17 23.34 0.19 -21.72 16 8 H 0.11 5.24 4.32 -2.91 -0.01 5.22 16 9 C 0.19 10.06 6.57 40.36 0.27 10.33 16 10 N -0.49 -26.82 8.03 -187.86 -1.51 -28.33 16 11 C 0.07 3.11 11.21 84.94 0.95 4.06 16 12 C -0.12 -5.39 11.22 84.88 0.95 -4.43 16 13 N -0.44 -20.80 10.39 -182.32 -1.89 -22.69 16 14 C 0.01 0.59 6.73 42.41 0.29 0.87 16 15 C -0.16 -6.85 5.64 -20.09 -0.11 -6.96 16 16 C 0.06 2.49 9.81 85.62 0.84 3.33 16 17 N -0.32 -11.53 12.50 -56.30 -0.70 -12.23 16 18 N -0.36 -11.13 3.79 -357.03 -1.35 -12.49 16 19 C 0.09 1.91 5.26 45.69 0.24 2.15 16 20 C 0.04 0.68 8.61 72.29 0.62 1.30 16 21 O -0.38 -8.15 12.46 -148.98 -1.86 -10.00 16 22 C 0.03 0.64 9.02 72.29 0.65 1.29 16 23 C 0.07 2.30 10.67 84.24 0.90 3.20 16 24 H 0.28 13.17 8.29 -92.71 -0.77 12.40 16 25 H 0.15 6.15 8.06 -2.91 -0.02 6.13 16 26 H 0.16 5.82 8.06 -2.91 -0.02 5.80 16 27 H 0.19 7.50 6.57 -2.91 -0.02 7.48 16 28 H 0.15 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.10 1.70 6.27 -2.39 -0.01 1.69 16 30 H 0.13 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.19 5.65 6.66 -2.91 -0.02 5.63 16 Total: -1.00 -66.08 288.75 2.38 -63.70 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 1.16 Total: 26.88 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 6.26 Total: -4.95 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -5.21 Total: -113.66 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.86 Total: -10.00 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Total: -66.08 2.38 -63.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240769832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.893 kcal (2) G-P(sol) polarization free energy of solvation -66.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds