Wall clock time and date at job start Mon Mar 30 2020 00:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86806 * 120.00297 * 2 1 4 4 H 1.48498 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46815 * 300.00153 * 3 2 1 6 6 H 1.48498 * 109.46814 * 59.99578 * 3 2 1 7 7 C 1.40049 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00478 * 186.34695 * 7 2 1 9 9 C 1.41302 * 119.99528 * 6.34401 * 7 2 1 10 10 C 1.40822 * 120.14338 * 173.83180 * 9 7 2 11 11 N 1.31887 * 119.97184 * 180.02562 * 10 9 7 12 12 C 1.32165 * 120.29633 * 359.97438 * 11 10 9 13 13 C 1.40076 * 120.29050 * 0.02562 * 12 11 10 14 14 C 1.48256 * 119.98838 * 179.97438 * 13 12 11 15 15 C 1.40960 * 126.24828 * 184.68705 * 14 13 12 16 16 N 1.30620 * 108.05982 * 180.26401 * 15 14 13 17 17 N 1.40002 * 108.57372 * 0.02562 * 16 15 14 18 18 C 1.46492 * 125.86953 * 179.97438 * 17 16 15 19 19 C 1.54032 * 113.82065 * 193.52915 * 18 17 16 20 20 O 1.44443 * 85.42979 * 223.23899 * 19 18 17 21 21 C 1.44181 * 93.37957 * 24.08713 * 20 19 18 22 22 C 1.34670 * 108.26429 * 359.97438 * 17 16 15 23 23 N 1.32552 * 120.02206 * 0.24974 * 13 12 11 24 24 H 0.97000 * 119.99342 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.01093 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.85492 * 179.97438 * 12 11 10 27 27 H 1.07998 * 125.96851 * 0.24695 * 15 14 13 28 28 H 1.09001 * 113.00358 * 325.35982 * 18 17 16 29 29 H 1.09006 * 113.86429 * 337.34371 * 19 18 17 30 30 H 1.09002 * 113.86784 * 109.04587 * 19 18 17 31 31 H 1.09000 * 113.86532 * 221.77120 * 21 20 19 32 32 H 1.09001 * 113.86417 * 90.06383 * 21 20 19 33 33 H 1.07999 * 126.19695 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0826 -1.2157 0.1039 9 6 1.3075 -2.4328 -0.1341 10 6 2.0150 -3.6434 -0.2644 11 7 1.3581 -4.7801 -0.3904 12 6 0.0365 -4.7896 -0.3946 13 6 -0.6790 -3.5922 -0.2658 14 6 -2.1614 -3.6105 -0.2719 15 6 -3.0089 -2.4845 -0.2447 16 7 -4.2447 -2.9075 -0.2551 17 7 -4.2367 -4.3071 -0.2884 18 6 -5.4189 -5.1719 -0.3088 19 6 -5.1118 -6.6524 -0.0144 20 8 -6.0163 -6.9369 -1.1040 21 6 -5.8171 -5.6480 -1.7187 22 6 -2.9555 -4.7217 -0.2986 23 7 -0.0310 -2.4423 -0.1439 24 1 -0.4849 0.8401 -0.0004 25 1 3.0950 -3.6409 -0.2620 26 1 -0.4941 -5.7244 -0.4987 27 1 -2.6919 -1.4524 -0.2194 28 1 -6.2500 -4.7710 0.2714 29 1 -4.0784 -6.9364 -0.2135 30 1 -5.4694 -6.9922 0.9576 31 1 -6.7331 -5.1928 -2.0955 32 1 -4.9996 -5.6246 -2.4393 33 1 -2.6171 -5.7470 -0.3227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240777714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:56 Heat of formation + Delta-G solvation = 113.847030 kcal Electronic energy + Delta-G solvation = -19785.438209 eV Core-core repulsion = 16621.557921 eV Total energy + Delta-G solvation = -3163.880288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.38907 -39.92203 -38.68042 -34.06595 -33.03453 -31.95138 -31.01833 -29.04927 -27.74940 -26.97148 -25.91744 -23.24113 -22.50568 -21.42266 -20.14689 -19.53174 -17.72029 -17.38245 -16.81068 -16.13346 -15.67613 -15.26356 -14.82167 -14.61140 -14.35101 -14.12173 -13.37814 -13.14628 -12.89032 -12.60627 -12.32387 -11.77183 -11.70315 -11.54267 -11.41772 -11.36323 -10.74674 -10.48545 -10.23876 -10.10753 -9.86582 -9.53053 -9.46643 -9.09540 -8.40013 -7.45313 -7.23966 -6.53697 -4.70778 1.86112 2.48457 2.59478 2.85560 3.02494 3.06617 3.17649 3.18555 3.66077 3.80885 3.83472 4.52025 4.60802 4.67886 4.89217 5.04403 5.11728 5.25780 5.47664 5.52697 5.63234 5.79609 5.81285 5.98145 6.03210 6.06720 6.41672 6.71163 6.90817 7.00496 7.14844 7.18390 7.22328 7.63374 8.01532 8.08883 8.40500 8.64717 9.23780 9.82985 10.11021 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028627 B = 0.004587 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.858330 B = 6102.703728 C = 6958.175128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.068 3.932 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.413 4.413 8 H 0.091 0.909 9 C 0.212 3.788 10 C -0.070 4.070 11 N -0.429 5.429 12 C -0.116 4.116 13 C 0.180 3.820 14 C -0.154 4.154 15 C 0.099 3.901 16 N -0.314 5.314 17 N -0.379 5.379 18 C 0.102 3.898 19 C 0.032 3.968 20 O -0.372 6.372 21 C 0.029 3.971 22 C 0.056 3.944 23 N -0.447 5.447 24 H 0.276 0.724 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.197 0.803 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -5.289 -0.366 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.445 4.445 8 H 0.109 0.891 9 C 0.086 3.914 10 C -0.240 4.240 11 N -0.140 5.140 12 C -0.275 4.275 13 C 0.032 3.968 14 C -0.167 4.167 15 C -0.089 4.089 16 N -0.133 5.133 17 N -0.163 5.163 18 C -0.001 4.001 19 C -0.046 4.046 20 O -0.290 6.290 21 C -0.049 4.049 22 C -0.090 4.090 23 N -0.165 5.165 24 H 0.087 0.913 25 H 0.150 0.850 26 H 0.139 0.861 27 H 0.214 0.786 28 H 0.148 0.852 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.753 -5.128 -0.430 11.921 hybrid contribution 1.329 0.629 0.045 1.471 sum -9.425 -4.499 -0.385 10.451 Atomic orbital electron populations 1.70072 1.07389 1.28213 1.27362 1.26108 0.94967 1.01351 0.93432 0.86199 0.80894 0.80700 0.78697 1.18205 1.19676 1.19718 1.19663 0.95025 0.89202 1.40638 0.89109 1.19350 0.88762 0.93373 0.89955 1.23148 0.99206 0.89389 1.12266 1.67609 1.08824 1.30119 1.07437 1.22349 0.90683 0.96668 1.17801 1.19901 0.90806 0.91475 0.94632 1.18784 0.92702 0.91522 1.13687 1.24296 0.88269 1.01045 0.95248 1.77217 1.22080 0.87840 1.26163 1.48372 1.04329 1.05006 1.58585 1.24806 0.87978 0.88927 0.98421 1.24560 0.96131 0.90752 0.93117 1.89797 1.62811 1.35910 1.40436 1.24584 1.02720 0.82181 0.95437 1.22318 0.83905 0.99845 1.02954 1.69528 1.07881 1.23149 1.15960 0.91287 0.85020 0.86119 0.78595 0.85210 0.88711 0.87453 0.87853 0.89120 0.81004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.52 11.51 55.55 0.64 -16.88 16 2 C 0.07 1.62 5.49 -17.34 -0.10 1.52 16 3 Si 0.91 17.51 29.56 -169.99 -5.03 12.48 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.41 -10.43 9.15 -37.74 -0.35 -10.77 16 8 H 0.09 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.21 5.61 6.54 -84.84 -0.56 5.06 16 10 C -0.07 -1.75 10.97 -16.55 -0.18 -1.93 16 11 N -0.43 -10.51 10.47 -12.05 -0.13 -10.63 16 12 C -0.12 -2.66 10.76 -16.72 -0.18 -2.84 16 13 C 0.18 4.28 6.76 -82.75 -0.56 3.72 16 14 C -0.15 -3.12 6.07 -105.34 -0.64 -3.76 16 15 C 0.10 1.97 11.80 -17.04 -0.20 1.77 16 16 N -0.31 -5.64 12.53 30.82 0.39 -5.26 16 17 N -0.38 -5.68 3.80 -61.03 -0.23 -5.91 16 18 C 0.10 1.11 5.26 -66.85 -0.35 0.76 16 19 C 0.03 0.29 8.61 37.64 0.32 0.62 16 20 O -0.37 -4.04 12.46 -35.23 -0.44 -4.48 16 21 C 0.03 0.29 9.02 37.65 0.34 0.63 16 22 C 0.06 0.89 10.08 -16.90 -0.17 0.72 16 23 N -0.45 -11.78 7.81 -7.50 -0.06 -11.84 16 24 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 25 H 0.13 2.96 8.06 -52.49 -0.42 2.54 16 26 H 0.12 2.34 7.02 -52.49 -0.37 1.97 16 27 H 0.20 4.05 8.06 -52.49 -0.42 3.63 16 28 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.09 0.81 6.28 -51.93 -0.33 0.49 16 30 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.17 2.19 5.90 -52.49 -0.31 1.88 16 LS Contribution 294.01 15.07 4.43 4.43 Total: -1.00 -30.36 294.01 -6.13 -36.49 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -3.09 Total: 6.11 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.62 Total: -4.51 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.61 Total: -50.51 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.44 Total: -4.48 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.36 -6.13 -36.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240777714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.332 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds