Wall clock time and date at job start Mon Mar 30 2020 01:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38218 * 119.91522 * 2 1 4 4 C 1.38038 * 120.20129 * 179.97438 * 3 2 1 5 5 C 1.39403 * 120.03006 * 359.97438 * 4 3 2 6 6 C 1.48392 * 120.08643 * 179.97438 * 5 4 3 7 7 C 1.39004 * 120.41944 * 309.73109 * 6 5 4 8 8 C 1.40959 * 118.12852 * 179.72192 * 7 6 5 9 9 C 1.41376 * 120.57430 * 180.25931 * 8 7 6 10 10 H 1.08002 * 119.99710 * 156.01312 * 9 8 7 11 11 C 1.39895 * 119.99841 * 336.00423 * 9 8 7 12 12 N 1.30865 * 120.00416 * 342.90902 * 11 9 8 13 13 Si 1.86799 * 119.99797 * 162.90316 * 11 9 8 14 14 H 1.48497 * 109.47382 * 60.00251 * 13 11 9 15 15 H 1.48502 * 109.47166 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47120 * 300.00184 * 13 11 9 17 17 C 1.40796 * 118.84856 * 0.58506 * 8 7 6 18 18 N 1.31500 * 120.70212 * 359.67063 * 17 8 7 19 19 C 1.32171 * 122.07506 * 0.02562 * 18 17 8 20 20 F 1.35094 * 119.46062 * 180.02562 * 19 18 17 21 21 C 1.39210 * 119.83010 * 0.02562 * 5 4 3 22 22 C 1.38719 * 119.79861 * 359.97438 * 21 5 4 23 23 N 1.39689 * 120.01546 * 179.97438 * 22 21 5 24 24 H 1.09004 * 109.46721 * 270.01751 * 1 2 3 25 25 H 1.08990 * 109.47389 * 30.02143 * 1 2 3 26 26 H 1.09007 * 109.46755 * 150.02562 * 1 2 3 27 27 H 1.08000 * 119.89720 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.98405 * 180.27544 * 4 3 2 29 29 H 1.07997 * 120.93829 * 359.97438 * 7 6 5 30 30 H 0.97002 * 120.00195 * 179.97438 * 12 11 9 31 31 H 1.08002 * 119.65440 * 179.69001 * 17 8 7 32 32 H 1.07993 * 120.09944 * 180.02562 * 21 5 4 33 33 H 0.97002 * 119.99827 * 0.02562 * 23 22 21 34 34 H 0.96994 * 120.00422 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1980 0.0000 4 6 3.5766 1.2049 0.0005 5 6 4.2803 0.0015 0.0016 6 6 5.7642 0.0075 0.0016 7 6 6.4649 0.7756 -0.9209 8 6 7.8735 0.7499 -0.8737 9 6 8.6376 1.5157 -1.7839 10 1 9.6456 1.8087 -1.5299 11 6 8.0881 1.8936 -3.0137 12 7 7.0256 1.2819 -3.4713 13 14 8.8710 3.2716 -4.0024 14 1 10.2729 2.9097 -4.3321 15 1 8.1043 3.4777 -5.2575 16 1 8.8576 4.5234 -3.2036 17 6 8.5063 -0.0569 0.0911 18 7 7.7980 -0.7701 0.9390 19 6 6.4763 -0.7654 0.9274 20 9 5.8014 -1.5181 1.8235 21 6 3.5873 -1.2059 0.0016 22 6 2.2001 -1.2045 0.0011 23 7 1.5002 -2.4134 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6532 2.1316 -0.0004 28 1 4.1117 2.1431 0.0050 29 1 5.9449 1.3784 -1.6506 30 1 6.6444 1.5442 -4.3239 31 1 9.5849 -0.0903 0.1356 32 1 4.1281 -2.1407 0.0029 33 1 1.9842 -3.2540 0.0009 34 1 0.5303 -2.4123 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240964982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:16 Heat of formation + Delta-G solvation = -21.430762 kcal Electronic energy + Delta-G solvation = -19889.544922 eV Core-core repulsion = 16699.878586 eV Total energy + Delta-G solvation = -3189.666335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.41782 -40.71851 -39.82161 -36.03369 -35.81895 -34.04509 -32.36388 -31.39165 -29.79865 -27.38875 -27.23571 -24.16814 -23.63219 -22.95208 -21.52480 -19.38242 -18.52463 -18.01524 -17.66862 -17.51446 -16.67693 -16.53818 -16.31371 -15.30808 -14.99596 -14.92469 -14.77495 -14.37291 -14.21912 -13.97254 -13.71530 -13.63085 -13.23904 -13.09995 -13.01730 -12.82043 -12.39742 -12.16686 -12.06083 -11.79177 -11.52885 -11.21935 -10.41766 -10.29923 -9.72316 -9.17762 -8.78118 -8.32420 -6.50672 0.08091 0.67036 0.74771 0.96552 1.42019 1.51951 1.55952 2.17490 2.56070 2.94028 3.03017 3.27482 3.48578 3.81047 4.00247 4.17139 4.25613 4.39896 4.58426 4.63973 4.77735 4.82381 4.89583 4.91043 5.01390 5.11801 5.13694 5.32327 5.39278 5.57608 5.66216 5.73633 5.81748 5.93533 6.02306 6.36298 6.60338 6.61688 6.64409 7.04065 7.31688 8.16156 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018987 B = 0.005787 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.339198 B = 4837.095224 C = 5894.497806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.173 4.173 3 C -0.072 4.072 4 C -0.175 4.175 5 C -0.008 4.008 6 C -0.092 4.092 7 C -0.116 4.116 8 C 0.035 3.965 9 C -0.460 4.460 10 H 0.099 0.901 11 C 0.036 3.964 12 N -0.809 5.809 13 Si 0.992 3.008 14 H -0.255 1.255 15 H -0.268 1.268 16 H -0.257 1.257 17 C -0.006 4.006 18 N -0.503 5.503 19 C 0.133 3.867 20 F -0.144 7.144 21 C -0.194 4.194 22 C 0.214 3.786 23 N -0.866 5.866 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.297 0.703 31 H 0.157 0.843 32 H 0.104 0.896 33 H 0.402 0.598 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 0.800 -0.061 11.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.178 4.178 3 C -0.091 4.091 4 C -0.195 4.195 5 C -0.009 4.009 6 C -0.096 4.096 7 C -0.141 4.141 8 C 0.031 3.969 9 C -0.488 4.488 10 H 0.117 0.883 11 C -0.182 4.182 12 N -0.433 5.433 13 Si 0.811 3.189 14 H -0.179 1.179 15 H -0.193 1.193 16 H -0.181 1.181 17 C -0.168 4.168 18 N -0.215 5.215 19 C -0.020 4.020 20 F -0.124 7.124 21 C -0.217 4.217 22 C 0.109 3.891 23 N -0.408 5.408 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.168 0.832 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.108 0.892 31 H 0.174 0.826 32 H 0.122 0.878 33 H 0.231 0.769 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.500 0.235 0.387 11.509 hybrid contribution 0.154 0.167 -0.754 0.788 sum -11.345 0.402 -0.367 11.358 Atomic orbital electron populations 1.20621 0.88481 1.03489 1.02790 1.19762 0.97623 0.90941 1.09440 1.20976 0.92582 0.98374 0.97131 1.21020 0.95102 0.96262 1.07139 1.18520 0.90319 0.94230 0.97864 1.19441 0.93483 0.99616 0.97042 1.21700 0.93948 1.00220 0.98241 1.18831 0.92980 0.91736 0.93381 1.19910 1.01639 1.27695 0.99542 0.88283 1.26941 0.94705 0.98016 0.98566 1.69834 1.19356 1.34838 1.19236 0.85084 0.79289 0.77516 0.76981 1.17855 1.19282 1.18088 1.22587 0.98694 0.98482 0.97050 1.66242 1.06754 1.22447 1.26049 1.17742 0.86972 1.01900 0.95390 1.91371 1.78521 1.75442 1.67089 1.20532 0.93074 0.96929 1.11154 1.17481 0.89901 0.87861 0.93859 1.42394 1.09309 1.04220 1.84909 0.90596 0.90280 0.91032 0.83250 0.86984 0.85034 0.89242 0.82571 0.87834 0.76929 0.75951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.57 71.23 0.68 -1.04 16 2 C -0.17 -4.77 5.90 -19.69 -0.12 -4.88 16 3 C -0.07 -2.17 9.68 22.22 0.21 -1.96 16 4 C -0.18 -6.69 9.53 22.50 0.21 -6.47 16 5 C -0.01 -0.35 5.32 -20.06 -0.11 -0.45 16 6 C -0.09 -4.64 5.48 -19.95 -0.11 -4.75 16 7 C -0.12 -6.04 8.29 23.12 0.19 -5.84 16 8 C 0.04 1.85 5.59 -21.21 -0.12 1.73 16 9 C -0.46 -22.55 9.08 23.44 0.21 -22.34 16 10 H 0.10 4.49 7.90 -2.91 -0.02 4.46 16 11 C 0.04 1.63 5.18 85.24 0.44 2.08 16 12 N -0.81 -39.17 10.92 21.82 0.24 -38.93 16 13 Si 0.99 34.26 29.59 68.60 2.03 36.29 16 14 H -0.25 -8.46 7.11 99.48 0.71 -7.76 16 15 H -0.27 -8.87 7.11 99.48 0.71 -8.17 16 16 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 17 C -0.01 -0.33 10.96 85.37 0.94 0.61 16 18 N -0.50 -26.65 10.34 -193.74 -2.00 -28.65 16 19 C 0.13 6.97 8.30 85.08 0.71 7.67 16 20 F -0.14 -7.22 15.91 44.97 0.72 -6.50 16 21 C -0.19 -7.62 8.71 22.62 0.20 -7.42 16 22 C 0.21 6.61 6.73 38.18 0.26 6.87 16 23 N -0.87 -19.08 8.99 -51.44 -0.46 -19.55 16 24 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 26 H 0.07 1.04 6.53 -2.38 -0.02 1.03 16 27 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.11 4.27 8.05 -2.91 -0.02 4.25 16 29 H 0.13 6.95 6.20 -2.91 -0.02 6.93 16 30 H 0.30 12.93 8.30 -92.71 -0.77 12.16 16 31 H 0.16 7.05 8.06 -2.91 -0.02 7.03 16 32 H 0.10 4.23 7.79 -2.91 -0.02 4.20 16 33 H 0.40 8.12 8.84 -92.71 -0.82 7.30 16 34 H 0.41 6.49 6.81 -92.71 -0.63 5.86 16 Total: -1.00 -62.30 298.13 3.83 -58.47 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.29 Total: 35.07 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 3.60 Total: -36.20 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -2.23 Total: -87.13 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.72 Total: -6.50 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.03 Total: 36.29 kcal Total: -62.30 3.83 -58.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240964982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.040 kcal (2) G-P(sol) polarization free energy of solvation -62.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds