Wall clock time and date at job start Mon Mar 30 2020 01:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47144 * 2 1 4 4 C 1.38318 * 120.35407 * 90.00607 * 3 2 1 5 5 N 1.31886 * 121.02903 * 180.02562 * 4 3 2 6 6 C 1.31738 * 121.85069 * 359.97438 * 5 4 3 7 7 C 1.39311 * 120.60185 * 359.97111 * 6 5 4 8 8 C 1.48377 * 120.54173 * 180.02562 * 7 6 5 9 9 C 1.39012 * 120.41582 * 310.00111 * 8 7 6 10 10 C 1.40958 * 118.12608 * 180.02562 * 9 8 7 11 11 C 1.41378 * 120.57009 * 179.97438 * 10 9 8 12 12 H 1.08010 * 119.99496 * 155.75076 * 11 10 9 13 13 C 1.39894 * 120.00375 * 335.75227 * 11 10 9 14 14 N 1.30866 * 120.00023 * 343.47993 * 13 11 10 15 15 Si 1.86800 * 120.00103 * 163.48569 * 13 11 10 16 16 H 1.48504 * 109.47076 * 89.99905 * 15 13 11 17 17 H 1.48500 * 109.47065 * 209.99675 * 15 13 11 18 18 H 1.48502 * 109.47138 * 329.99987 * 15 13 11 19 19 C 1.40793 * 118.85671 * 0.02562 * 10 9 8 20 20 N 1.31504 * 120.69593 * 359.97438 * 19 10 9 21 21 C 1.32165 * 122.07527 * 359.97438 * 20 19 10 22 22 F 1.35101 * 119.45793 * 179.97438 * 21 20 19 23 23 C 1.38405 * 120.36011 * 270.26524 * 3 2 1 24 24 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46876 * 299.99603 * 1 2 3 26 26 H 1.08998 * 109.47245 * 59.99158 * 1 2 3 27 27 H 1.09007 * 109.46400 * 240.01002 * 2 1 3 28 28 H 1.08998 * 109.47245 * 120.00842 * 2 1 3 29 29 H 1.08003 * 119.48388 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.70290 * 180.02562 * 6 5 4 31 31 H 1.07996 * 120.93942 * 359.97438 * 9 8 7 32 32 H 0.97001 * 120.00053 * 180.02562 * 14 13 11 33 33 H 1.08002 * 119.65593 * 179.72422 * 19 10 9 34 34 H 1.07997 * 120.84831 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2655 2.0798 1.1936 5 7 2.7046 3.3233 1.2091 6 6 2.9406 3.9912 0.0984 7 6 2.7316 3.3972 -1.1443 8 6 2.9984 4.1504 -2.3945 9 6 2.4749 5.4258 -2.5730 10 6 2.7582 6.0975 -3.7795 11 6 2.2518 7.3962 -4.0155 12 1 2.7532 8.0532 -4.7108 13 6 1.1013 7.8303 -3.3485 14 7 0.3143 6.9608 -2.7676 15 14 0.6882 9.6510 -3.2870 16 1 -0.1561 10.0068 -4.4557 17 1 -0.0506 9.9489 -2.0337 18 1 1.9428 10.4447 -3.3227 19 6 3.5533 5.4523 -4.7459 20 7 4.0252 4.2442 -4.5291 21 6 3.7806 3.5856 -3.4097 22 9 4.2918 2.3462 -3.2427 23 6 2.2603 2.0822 -1.1942 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8932 -0.5137 -0.8902 28 1 1.8934 -0.5139 0.8899 29 1 2.0851 1.5680 2.1274 30 1 3.3001 5.0082 0.1515 31 1 1.8676 5.8887 -1.8093 32 1 -0.4836 7.2618 -2.3054 33 1 3.7747 5.9533 -5.6767 34 1 2.0832 1.5931 -2.1407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241380360.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:51 Heat of formation + Delta-G solvation = -16.491676 kcal Electronic energy + Delta-G solvation = -19883.638469 eV Core-core repulsion = 16694.186309 eV Total energy + Delta-G solvation = -3189.452160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.47889 -41.31473 -40.02659 -36.05096 -35.69986 -34.66440 -32.33659 -31.13582 -30.07968 -27.43674 -25.51582 -24.94293 -23.97592 -23.07761 -21.63979 -19.30402 -18.56703 -18.01199 -17.91013 -17.26399 -17.00074 -16.47980 -16.16931 -15.33483 -15.01380 -14.76285 -14.67806 -14.33295 -14.15376 -14.00616 -13.85840 -13.68469 -13.49058 -13.12544 -13.04500 -12.84739 -12.44936 -12.24678 -11.94832 -11.80364 -11.25917 -11.07319 -10.69656 -10.25277 -10.22956 -9.84045 -9.31615 -8.81682 -6.53850 -0.16624 0.22618 0.61773 0.83367 1.41337 1.48160 1.57286 2.15590 2.52443 2.78631 3.20327 3.40720 3.43064 3.70134 3.81446 3.95884 4.00366 4.18496 4.21851 4.47971 4.49163 4.59832 4.63495 4.84258 4.90087 4.96403 5.04922 5.06943 5.09876 5.26180 5.37077 5.38489 5.52916 5.67902 5.73421 5.86980 6.31583 6.56887 6.61222 6.94106 7.27965 8.12216 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.005758 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.265019 B = 4861.682753 C = 5703.124105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.125 4.125 4 C 0.090 3.910 5 N -0.494 5.494 6 C 0.093 3.907 7 C -0.086 4.086 8 C -0.090 4.090 9 C -0.114 4.114 10 C 0.036 3.964 11 C -0.455 4.455 12 H 0.100 0.900 13 C 0.036 3.964 14 N -0.809 5.809 15 Si 0.990 3.010 16 H -0.260 1.260 17 H -0.268 1.268 18 H -0.253 1.253 19 C -0.001 4.001 20 N -0.501 5.501 21 C 0.136 3.864 22 F -0.144 7.144 23 C -0.071 4.071 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.190 0.810 30 H 0.152 0.848 31 H 0.132 0.868 32 H 0.296 0.704 33 H 0.159 0.841 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -5.886 6.743 9.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.126 4.126 4 C -0.067 4.067 5 N -0.202 5.202 6 C -0.063 4.063 7 C -0.089 4.089 8 C -0.095 4.095 9 C -0.139 4.139 10 C 0.032 3.968 11 C -0.483 4.483 12 H 0.118 0.882 13 C -0.182 4.182 14 N -0.433 5.433 15 Si 0.810 3.190 16 H -0.184 1.184 17 H -0.193 1.193 18 H -0.176 1.176 19 C -0.163 4.163 20 N -0.213 5.213 21 C -0.017 4.017 22 F -0.124 7.124 23 C -0.097 4.097 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.206 0.794 30 H 0.169 0.831 31 H 0.150 0.850 32 H 0.107 0.893 33 H 0.176 0.824 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.128 -5.973 7.074 9.500 hybrid contribution -0.673 0.554 -0.596 1.056 sum -2.801 -5.419 6.478 8.898 Atomic orbital electron populations 1.21754 0.93944 1.02898 1.01672 1.20556 0.96599 0.89546 1.04569 1.21159 0.99565 0.99199 0.92707 1.23233 0.94721 0.90070 0.98720 1.67646 1.12324 1.09671 1.30564 1.22786 0.97025 0.99794 0.86726 1.19746 1.00568 0.95080 0.93476 1.19155 1.00520 0.96155 0.93624 1.21705 1.01352 0.92729 0.98120 1.18809 0.92062 0.94755 0.91222 1.19949 1.08314 0.97960 1.22126 0.88160 1.26919 0.94452 1.05001 0.91794 1.69816 1.10581 1.38536 1.24330 0.85057 0.79554 0.75387 0.79042 1.18411 1.19292 1.17597 1.22619 1.03937 0.89742 0.99984 1.66265 1.22743 1.10954 1.21300 1.17680 1.05977 0.83648 0.94389 1.91380 1.86669 1.38985 1.95359 1.21640 0.95811 0.92911 0.99313 0.90061 0.92199 0.94324 0.90611 0.87905 0.79351 0.83071 0.85020 0.89261 0.82419 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.89 71.98 0.71 -1.95 16 2 C -0.07 -1.47 6.08 29.85 0.18 -1.29 16 3 C -0.12 -3.51 5.15 -19.80 -0.10 -3.61 16 4 C 0.09 2.52 10.85 84.70 0.92 3.44 16 5 N -0.49 -17.08 10.35 -194.95 -2.02 -19.10 16 6 C 0.09 3.57 10.71 84.97 0.91 4.48 16 7 C -0.09 -3.55 5.33 -19.95 -0.11 -3.66 16 8 C -0.09 -4.27 5.51 -19.95 -0.11 -4.38 16 9 C -0.11 -5.65 8.30 23.12 0.19 -5.45 16 10 C 0.04 1.82 5.59 -21.22 -0.12 1.70 16 11 C -0.46 -21.55 9.08 23.44 0.21 -21.34 16 12 H 0.10 4.38 7.90 -2.91 -0.02 4.36 16 13 C 0.04 1.62 5.19 85.24 0.44 2.06 16 14 N -0.81 -38.03 10.90 21.82 0.24 -37.79 16 15 Si 0.99 33.51 29.59 68.60 2.03 35.54 16 16 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 17 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 18 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 19 C 0.00 -0.05 10.96 85.37 0.94 0.89 16 20 N -0.50 -25.30 10.34 -193.74 -2.00 -27.31 16 21 C 0.14 6.74 8.32 85.08 0.71 7.45 16 22 F -0.14 -6.78 15.99 44.97 0.72 -6.06 16 23 C -0.07 -2.55 8.71 22.68 0.20 -2.35 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.48 8.10 -2.38 -0.02 1.46 16 28 H 0.10 1.46 8.09 -2.39 -0.02 1.44 16 29 H 0.19 3.66 8.06 -2.91 -0.02 3.63 16 30 H 0.15 5.70 8.05 -2.91 -0.02 5.68 16 31 H 0.13 6.65 6.20 -2.91 -0.02 6.63 16 32 H 0.30 12.58 8.30 -92.71 -0.77 11.81 16 33 H 0.16 6.79 8.06 -2.91 -0.02 6.76 16 34 H 0.13 4.54 7.88 -2.91 -0.02 4.52 16 Total: -1.00 -58.07 303.20 5.06 -53.01 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 1.12 Total: 25.72 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 4.97 Total: -24.02 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.78 Total: -84.20 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.72 Total: -6.06 kcal Atomic # 14 Polarization: 33.51 SS G_CDS: 2.03 Total: 35.54 kcal Total: -58.07 5.06 -53.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241380360.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.520 kcal (2) G-P(sol) polarization free energy of solvation -58.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds