Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47469 * 2 1 4 4 C 1.35353 * 117.00219 * 180.02562 * 3 2 1 5 5 N 1.32450 * 119.00937 * 180.02562 * 4 3 2 6 6 C 1.32035 * 120.92408 * 179.97438 * 5 4 3 7 7 C 1.40127 * 118.97745 * 0.02562 * 6 5 4 8 8 C 1.47696 * 120.89228 * 180.02562 * 7 6 5 9 9 N 1.32899 * 120.25015 * 224.21630 * 8 7 6 10 10 C 1.32006 * 120.07137 * 179.72601 * 9 8 7 11 11 C 1.39198 * 120.59552 * 359.97438 * 10 9 8 12 12 N 1.31608 * 120.51485 * 359.97438 * 11 10 9 13 13 C 1.33967 * 119.90341 * 0.03665 * 12 11 10 14 14 C 1.40755 * 120.29052 * 180.02562 * 13 12 11 15 15 H 1.08009 * 120.00304 * 189.99557 * 14 13 12 16 16 C 1.40162 * 120.00212 * 9.98844 * 14 13 12 17 17 N 1.30702 * 119.99538 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00303 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47409 * 90.00124 * 18 16 14 20 20 H 1.48508 * 109.46943 * 210.00026 * 18 16 14 21 21 H 1.48500 * 109.47055 * 329.99596 * 18 16 14 22 22 C 1.40131 * 118.21327 * 0.26860 * 7 6 5 23 23 N 1.32038 * 118.97563 * 359.44834 * 22 7 6 24 24 H 1.09002 * 109.47330 * 59.99403 * 1 2 3 25 25 H 1.08993 * 109.47402 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46798 * 299.99865 * 1 2 3 27 27 H 1.09009 * 109.46649 * 240.00622 * 2 1 3 28 28 H 1.08992 * 109.47436 * 120.00579 * 2 1 3 29 29 H 1.08005 * 120.50946 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.70689 * 179.97438 * 10 9 8 31 31 H 1.07998 * 119.74019 * 179.97438 * 11 10 9 32 32 H 0.97002 * 119.99711 * 180.02562 * 17 16 14 33 33 H 1.07996 * 120.50836 * 179.70019 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3483 1.5246 -0.0005 5 7 3.8333 2.7570 0.0000 6 6 5.1358 2.9737 0.0000 7 6 6.0065 1.8758 -0.0011 8 6 7.4708 2.0693 -0.0006 9 7 8.2425 1.3422 -0.8018 10 6 9.5503 1.5218 -0.8024 11 6 10.1355 2.4705 0.0314 12 7 9.3933 3.2039 0.8334 13 6 8.0640 3.0384 0.8507 14 6 7.2624 3.8187 1.7048 15 1 6.2181 3.5762 1.8365 16 6 7.8192 4.9106 2.3848 17 7 9.0828 5.2043 2.2253 18 14 6.7556 5.9458 3.5190 19 1 6.8037 5.3836 4.8926 20 1 7.2637 7.3411 3.5371 21 1 5.3539 5.9358 3.0287 22 6 5.4508 0.5894 -0.0079 23 7 4.1367 0.4603 -0.0020 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 5.5240 3.9815 0.0008 30 1 10.1718 0.9274 -1.4556 31 1 11.2069 2.6057 0.0200 32 1 9.4682 5.9597 2.6962 33 1 6.0875 -0.2829 -0.0139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241548013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = 53.439719 kcal Electronic energy + Delta-G solvation = -19896.646425 eV Core-core repulsion = 16730.146679 eV Total energy + Delta-G solvation = -3166.499746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.67465 -39.09831 -37.94878 -34.35391 -33.30478 -32.96368 -31.86194 -31.19407 -28.79610 -26.44243 -24.39770 -24.18205 -22.53456 -22.13603 -21.29006 -18.57541 -17.83737 -17.22402 -16.31753 -16.00480 -15.89691 -15.05940 -14.65282 -14.29704 -14.11348 -13.78529 -13.10007 -13.05993 -12.92517 -12.66538 -12.31967 -12.28532 -11.65857 -11.54603 -11.47666 -11.04855 -10.70774 -10.66917 -10.48591 -10.21562 -10.00769 -9.75686 -9.40573 -8.75371 -8.59216 -7.75543 -7.55362 -6.76166 -4.90998 1.36941 1.61219 2.39075 2.82785 2.89303 2.93935 2.97896 3.05702 3.70714 4.30006 4.44257 4.51492 4.98694 4.99401 5.11732 5.16288 5.35731 5.38714 5.47100 5.67268 5.79315 5.80095 5.84643 5.96763 6.11930 6.28330 6.46991 6.56150 6.73232 6.78238 6.96611 7.21057 7.42615 7.63521 7.78919 8.15793 8.41316 8.57289 8.99506 9.59919 9.88189 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017511 B = 0.006110 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.578282 B = 4581.499440 C = 6016.109555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 O -0.296 6.296 4 C 0.468 3.532 5 N -0.524 5.524 6 C 0.194 3.806 7 C -0.105 4.105 8 C -0.028 4.028 9 N -0.410 5.410 10 C -0.111 4.111 11 C 0.092 3.908 12 N -0.450 5.450 13 C 0.224 3.776 14 C -0.405 4.405 15 H 0.095 0.905 16 C 0.067 3.933 17 N -0.700 5.700 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.253 1.253 22 C 0.183 3.817 23 N -0.570 5.570 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.185 0.815 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.282 0.718 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.214 -4.406 -1.037 8.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.004 4.004 3 O -0.199 6.199 4 C 0.166 3.834 5 N -0.248 5.248 6 C 0.027 3.973 7 C -0.111 4.111 8 C -0.175 4.175 9 N -0.122 5.122 10 C -0.274 4.274 11 C -0.080 4.080 12 N -0.166 5.166 13 C 0.100 3.900 14 C -0.435 4.435 15 H 0.113 0.887 16 C -0.162 4.162 17 N -0.319 5.319 18 Si 0.730 3.270 19 H -0.189 1.189 20 H -0.196 1.196 21 H -0.176 1.176 22 C 0.017 3.983 23 N -0.299 5.299 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.202 0.798 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.094 0.906 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.345 -4.209 -0.944 9.394 hybrid contribution 0.884 0.298 0.479 1.049 sum -7.461 -3.911 -0.465 8.437 Atomic orbital electron populations 1.21812 0.93035 1.02667 1.03363 1.22596 0.94434 0.80690 1.02640 1.85981 1.15543 1.30488 1.87889 1.20605 0.84983 0.85813 0.92043 1.67558 1.16097 1.21654 1.19524 1.23514 0.85251 1.00589 0.87944 1.19890 0.93970 0.94391 1.02855 1.19626 0.90493 1.03945 1.03433 1.67661 1.05762 1.21517 1.17310 1.22587 0.91304 1.05844 1.07645 1.23586 1.00093 0.91964 0.92322 1.69541 1.04505 1.22792 1.19773 1.19174 0.89610 0.90065 0.91149 1.19797 0.97301 1.07488 1.18910 0.88705 1.26184 0.95338 0.97936 0.96694 1.70017 1.11807 1.20905 1.29218 0.86265 0.81315 0.78911 0.80476 1.18938 1.19555 1.17595 1.23035 0.88508 0.97085 0.89625 1.67901 1.06906 1.33705 1.21410 0.91662 0.90323 0.91631 0.91590 0.91571 0.79835 0.85138 0.84935 0.90642 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.06 16 2 C 0.07 0.94 6.00 37.16 0.22 1.17 16 3 O -0.30 -5.14 10.19 -17.75 -0.18 -5.32 16 4 C 0.47 9.14 8.48 -91.03 -0.77 8.37 16 5 N -0.52 -10.76 10.45 -14.36 -0.15 -10.91 16 6 C 0.19 3.97 8.85 -16.76 -0.15 3.82 16 7 C -0.10 -2.22 5.29 -104.62 -0.55 -2.77 16 8 C -0.03 -0.66 6.46 -82.11 -0.53 -1.19 16 9 N -0.41 -9.37 10.33 -8.98 -0.09 -9.46 16 10 C -0.11 -2.37 11.22 -17.12 -0.19 -2.56 16 11 C 0.09 2.03 11.22 -17.29 -0.19 1.83 16 12 N -0.45 -11.36 8.11 -10.72 -0.09 -11.45 16 13 C 0.22 5.61 6.52 -84.55 -0.55 5.06 16 14 C -0.41 -9.72 7.51 -37.91 -0.28 -10.00 16 15 H 0.10 2.17 5.37 -52.48 -0.28 1.89 16 16 C 0.07 1.54 5.49 -17.31 -0.10 1.45 16 17 N -0.70 -16.84 11.54 55.56 0.64 -16.20 16 18 Si 0.91 17.15 29.56 -169.99 -5.02 12.12 16 19 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.25 -4.77 7.11 56.52 0.40 -4.36 16 22 C 0.18 3.53 11.00 -16.75 -0.18 3.35 16 23 N -0.57 -10.76 9.19 -14.36 -0.13 -10.89 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.84 8.09 -51.92 -0.42 0.42 16 28 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.18 3.66 6.81 -52.48 -0.36 3.30 16 30 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.13 2.46 8.06 -52.49 -0.42 2.04 16 32 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 33 H 0.17 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 294.25 15.07 4.43 4.43 Total: -1.00 -28.30 294.25 -6.64 -34.94 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.15 Total: 5.27 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -2.90 Total: 7.46 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.18 Total: -58.92 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.18 Total: -5.32 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.02 Total: 12.12 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.30 -6.64 -34.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241548013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.384 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds