Wall clock time and date at job start Mon Mar 30 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47469 * 2 1 4 4 C 1.35353 * 117.00219 * 180.02562 * 3 2 1 5 5 N 1.32450 * 119.00937 * 180.02562 * 4 3 2 6 6 C 1.32035 * 120.92408 * 179.97438 * 5 4 3 7 7 C 1.40127 * 118.97745 * 0.02562 * 6 5 4 8 8 C 1.47696 * 120.89228 * 180.02562 * 7 6 5 9 9 N 1.32899 * 120.25015 * 224.21630 * 8 7 6 10 10 C 1.32006 * 120.07137 * 179.72601 * 9 8 7 11 11 C 1.39198 * 120.59552 * 359.97438 * 10 9 8 12 12 N 1.31608 * 120.51485 * 359.97438 * 11 10 9 13 13 C 1.33967 * 119.90341 * 0.03665 * 12 11 10 14 14 C 1.40755 * 120.29052 * 180.02562 * 13 12 11 15 15 H 1.08009 * 120.00304 * 189.99557 * 14 13 12 16 16 C 1.40162 * 120.00212 * 9.98844 * 14 13 12 17 17 N 1.30702 * 119.99538 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00303 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47409 * 90.00124 * 18 16 14 20 20 H 1.48508 * 109.46943 * 210.00026 * 18 16 14 21 21 H 1.48500 * 109.47055 * 329.99596 * 18 16 14 22 22 C 1.40131 * 118.21327 * 0.26860 * 7 6 5 23 23 N 1.32038 * 118.97563 * 359.44834 * 22 7 6 24 24 H 1.09002 * 109.47330 * 59.99403 * 1 2 3 25 25 H 1.08993 * 109.47402 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46798 * 299.99865 * 1 2 3 27 27 H 1.09009 * 109.46649 * 240.00622 * 2 1 3 28 28 H 1.08992 * 109.47436 * 120.00579 * 2 1 3 29 29 H 1.08005 * 120.50946 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.70689 * 179.97438 * 10 9 8 31 31 H 1.07998 * 119.74019 * 179.97438 * 11 10 9 32 32 H 0.97002 * 119.99711 * 180.02562 * 17 16 14 33 33 H 1.07996 * 120.50836 * 179.70019 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3483 1.5246 -0.0005 5 7 3.8333 2.7570 0.0000 6 6 5.1358 2.9737 0.0000 7 6 6.0065 1.8758 -0.0011 8 6 7.4708 2.0693 -0.0006 9 7 8.2425 1.3422 -0.8018 10 6 9.5503 1.5218 -0.8024 11 6 10.1355 2.4705 0.0314 12 7 9.3933 3.2039 0.8334 13 6 8.0640 3.0384 0.8507 14 6 7.2624 3.8187 1.7048 15 1 6.2181 3.5762 1.8365 16 6 7.8192 4.9106 2.3848 17 7 9.0828 5.2043 2.2253 18 14 6.7556 5.9458 3.5190 19 1 6.8037 5.3836 4.8926 20 1 7.2637 7.3411 3.5371 21 1 5.3539 5.9358 3.0287 22 6 5.4508 0.5894 -0.0079 23 7 4.1367 0.4603 -0.0020 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 5.5240 3.9815 0.0008 30 1 10.1718 0.9274 -1.4556 31 1 11.2069 2.6057 0.0200 32 1 9.4682 5.9597 2.6962 33 1 6.0875 -0.2829 -0.0139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241548013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:21 Heat of formation + Delta-G solvation = 33.166041 kcal Electronic energy + Delta-G solvation = -19897.525557 eV Core-core repulsion = 16730.146679 eV Total energy + Delta-G solvation = -3167.378878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.20686 -40.78428 -39.34292 -36.07513 -34.86329 -34.59382 -33.42387 -32.40113 -30.41068 -28.16835 -25.84623 -25.75446 -23.90230 -23.69779 -22.89062 -19.99713 -19.55280 -18.77465 -17.76535 -17.54579 -17.51208 -16.78162 -16.11988 -15.86637 -15.41960 -15.10758 -14.78458 -14.67480 -14.45167 -13.96843 -13.44855 -13.44041 -13.31588 -13.03813 -12.70067 -12.51234 -12.23511 -12.03395 -11.95396 -11.82481 -11.57697 -11.53189 -11.10930 -10.35963 -10.18131 -9.47459 -9.25490 -8.47464 -6.68805 -0.23016 0.04758 0.69428 1.12030 1.39282 1.48859 1.53430 1.56170 2.14515 2.68792 2.77028 3.02670 3.54552 3.63436 3.76395 3.78260 4.07478 4.11058 4.17180 4.22080 4.44079 4.49057 4.61726 4.77590 4.91751 4.92995 4.94834 5.08239 5.10974 5.22615 5.30959 5.68739 5.77985 6.03668 6.13974 6.41928 6.65543 7.03472 7.25263 7.84941 8.21138 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017511 B = 0.006110 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.578282 B = 4581.499440 C = 6016.109555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 O -0.304 6.304 4 C 0.467 3.533 5 N -0.539 5.539 6 C 0.197 3.803 7 C -0.124 4.124 8 C -0.036 4.036 9 N -0.422 5.422 10 C -0.108 4.108 11 C 0.082 3.918 12 N -0.484 5.484 13 C 0.199 3.801 14 C -0.426 4.426 15 H 0.097 0.903 16 C 0.032 3.968 17 N -0.735 5.735 18 Si 0.974 3.026 19 H -0.263 1.263 20 H -0.261 1.261 21 H -0.253 1.253 22 C 0.192 3.808 23 N -0.563 5.563 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.183 0.817 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.289 0.711 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 -5.140 -1.016 9.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.012 4.012 3 O -0.207 6.207 4 C 0.165 3.835 5 N -0.264 5.264 6 C 0.030 3.970 7 C -0.130 4.130 8 C -0.182 4.182 9 N -0.135 5.135 10 C -0.270 4.270 11 C -0.088 4.088 12 N -0.201 5.201 13 C 0.074 3.926 14 C -0.456 4.456 15 H 0.115 0.885 16 C -0.193 4.193 17 N -0.355 5.355 18 Si 0.794 3.206 19 H -0.188 1.188 20 H -0.184 1.184 21 H -0.177 1.177 22 C 0.027 3.973 23 N -0.292 5.292 24 H 0.085 0.915 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.199 0.801 30 H 0.184 0.816 31 H 0.181 0.819 32 H 0.100 0.900 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.365 -4.962 -0.938 10.640 hybrid contribution 1.185 0.392 0.383 1.305 sum -8.180 -4.570 -0.556 9.387 Atomic orbital electron populations 1.21846 0.90148 1.04633 1.03465 1.23000 0.96631 0.78764 1.02840 1.86020 1.14148 1.33223 1.87309 1.20880 0.86000 0.85645 0.91001 1.67574 1.15970 1.22481 1.20422 1.23450 0.85361 1.00525 0.87637 1.19863 0.93146 0.95315 1.04674 1.19806 0.91518 1.03739 1.03180 1.67738 1.06500 1.21847 1.17391 1.23173 0.91207 1.05377 1.07241 1.24122 1.01446 0.91528 0.91748 1.69495 1.05048 1.24221 1.21338 1.19526 0.90010 0.91017 0.92016 1.20001 0.97504 1.08346 1.19756 0.88512 1.26937 0.96317 0.98503 0.97578 1.70069 1.13264 1.21820 1.30347 0.85289 0.79412 0.77656 0.78269 1.18775 1.18449 1.17677 1.23250 0.88855 0.96934 0.88278 1.68006 1.06498 1.33228 1.21479 0.91500 0.87364 0.91580 0.91302 0.91421 0.80065 0.81607 0.81923 0.89951 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.06 1.52 6.00 71.98 0.43 1.95 16 3 O -0.30 -10.19 10.19 -86.43 -0.88 -11.07 16 4 C 0.47 17.85 8.48 180.49 1.53 19.38 16 5 N -0.54 -22.03 10.45 -312.30 -3.26 -25.30 16 6 C 0.20 8.13 8.85 85.12 0.75 8.88 16 7 C -0.12 -5.24 5.29 -19.86 -0.11 -5.35 16 8 C -0.04 -1.71 6.46 42.41 0.27 -1.43 16 9 N -0.42 -18.98 10.33 -182.32 -1.88 -20.86 16 10 C -0.11 -4.42 11.22 84.90 0.95 -3.47 16 11 C 0.08 3.56 11.22 84.96 0.95 4.51 16 12 N -0.48 -24.68 8.11 -187.84 -1.52 -26.20 16 13 C 0.20 10.10 6.52 40.36 0.26 10.36 16 14 C -0.43 -20.82 7.51 23.35 0.18 -20.64 16 15 H 0.10 4.53 5.37 -2.91 -0.02 4.51 16 16 C 0.03 1.48 5.49 85.33 0.47 1.95 16 17 N -0.73 -35.78 11.54 21.86 0.25 -35.53 16 18 Si 0.97 35.19 29.56 68.60 2.03 37.22 16 19 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 20 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 21 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 22 C 0.19 7.29 11.00 85.12 0.94 8.22 16 23 N -0.56 -20.60 9.19 -312.30 -2.87 -23.47 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.07 1.62 8.09 -2.38 -0.02 1.61 16 28 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 29 H 0.18 7.44 6.81 -2.91 -0.02 7.42 16 30 H 0.17 5.48 8.06 -2.91 -0.02 5.46 16 31 H 0.16 5.79 8.06 -2.91 -0.02 5.77 16 32 H 0.29 12.63 8.29 -92.71 -0.77 11.86 16 33 H 0.18 6.20 8.06 -2.91 -0.02 6.18 16 Total: -1.00 -60.35 294.25 0.38 -59.96 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 1.15 Total: 22.51 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 7.37 Total: 22.74 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -9.29 Total: -131.36 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.88 Total: -11.07 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.22 kcal Total: -60.35 0.38 -59.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241548013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.130 kcal (2) G-P(sol) polarization free energy of solvation -60.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds