Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46825 * 2 1 4 4 C 1.35387 * 116.99701 * 179.97438 * 3 2 1 5 5 N 1.32433 * 119.01531 * 179.97438 * 4 3 2 6 6 C 1.32051 * 120.92191 * 179.97438 * 5 4 3 7 7 C 1.40073 * 118.98461 * 0.02562 * 6 5 4 8 8 C 1.47866 * 120.89174 * 179.97438 * 7 6 5 9 9 C 1.40477 * 120.79354 * 180.02562 * 8 7 6 10 10 N 1.31570 * 119.09044 * 180.02562 * 9 8 7 11 11 C 1.33662 * 120.83125 * 359.97438 * 10 9 8 12 12 C 1.41037 * 119.12950 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00375 * 0.02562 * 12 11 10 14 14 C 1.40125 * 120.00074 * 180.02562 * 12 11 10 15 15 N 1.30669 * 120.00113 * 0.02562 * 14 12 11 16 16 Si 1.86810 * 120.00106 * 179.72736 * 14 12 11 17 17 H 1.48498 * 109.46908 * 89.99882 * 16 14 12 18 18 H 1.48497 * 109.46933 * 209.99933 * 16 14 12 19 19 H 1.48500 * 109.46636 * 330.00039 * 16 14 12 20 20 N 1.33659 * 121.74287 * 0.26476 * 11 10 9 21 21 C 1.31574 * 120.83455 * 359.46719 * 20 11 10 22 22 C 1.40079 * 118.22273 * 0.25274 * 7 6 5 23 23 N 1.32058 * 118.97709 * 359.48999 * 22 7 6 24 24 H 1.08996 * 109.47106 * 299.99836 * 1 2 3 25 25 H 1.09008 * 109.46982 * 60.00060 * 1 2 3 26 26 H 1.08994 * 109.46989 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46960 * 240.00444 * 2 1 3 28 28 H 1.09000 * 109.47139 * 120.00218 * 2 1 3 29 29 H 1.08008 * 120.50904 * 179.97438 * 6 5 4 30 30 H 1.07995 * 120.45602 * 359.97438 * 9 8 7 31 31 H 0.97000 * 119.99835 * 179.97438 * 15 14 12 32 32 H 1.07994 * 120.45492 * 180.23636 * 21 20 11 33 33 H 1.07998 * 120.51529 * 179.72714 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3485 1.5247 0.0005 5 7 3.8336 2.7570 0.0000 6 6 5.1362 2.9735 0.0010 7 6 6.0067 1.8760 0.0021 8 6 7.4726 2.0697 0.0027 9 6 8.3437 0.9676 0.0032 10 7 9.6423 1.1787 0.0042 11 6 10.1344 2.4215 0.0043 12 6 11.5326 2.6063 0.0059 13 1 12.1905 1.7498 0.0067 14 6 12.0681 3.9011 0.0065 15 7 11.2722 4.9374 0.0060 16 14 13.9201 4.1459 0.0164 17 1 14.4186 4.2082 -1.3810 18 1 14.2480 5.4141 0.7159 19 1 14.5657 3.0100 0.7222 20 7 9.3364 3.4937 0.0085 21 6 8.0274 3.3603 0.0023 22 6 5.4513 0.5900 -0.0034 23 7 4.1371 0.4607 0.0010 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 5.5246 3.9813 0.0002 30 1 7.9527 -0.0391 0.0036 31 1 11.6430 5.8338 0.0068 32 1 7.3885 4.2309 0.0020 33 1 6.0881 -0.2823 -0.0072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241551084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = 55.462967 kcal Electronic energy + Delta-G solvation = -19213.022805 eV Core-core repulsion = 16046.610794 eV Total energy + Delta-G solvation = -3166.412011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.79098 -39.10097 -38.06907 -34.29623 -33.50392 -32.74377 -32.00080 -31.42932 -29.03285 -26.30704 -25.00123 -23.78316 -22.87231 -22.18864 -21.25663 -18.75954 -18.13549 -17.37973 -16.38824 -16.11562 -15.54953 -15.03322 -14.80297 -14.38375 -14.31186 -13.89137 -13.35681 -13.23246 -12.88171 -12.73061 -12.43300 -12.13525 -11.61997 -11.52407 -11.47575 -11.29007 -10.97945 -10.86375 -10.55371 -10.49552 -9.87657 -9.45455 -9.38549 -9.13568 -8.89086 -7.56087 -7.53832 -6.83839 -4.96383 1.12341 1.40343 2.53008 2.78425 2.79457 2.90165 2.94007 2.98319 3.66421 4.13832 4.36199 4.46193 4.85506 4.91103 4.96390 5.00849 5.29244 5.39848 5.42890 5.55791 5.66064 5.67260 5.69949 5.71349 5.89138 6.04958 6.15854 6.51477 6.64427 6.77845 7.03731 7.06429 7.32466 7.53810 7.86012 8.17897 8.25909 8.43027 8.82716 9.80143 9.98460 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.066893 B = 0.003305 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.478545 B = 8470.646773 C = 8868.671405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 O -0.298 6.298 4 C 0.448 3.552 5 N -0.512 5.512 6 C 0.150 3.850 7 C -0.091 4.091 8 C -0.324 4.324 9 C 0.191 3.809 10 N -0.589 5.589 11 C 0.375 3.625 12 C -0.364 4.364 13 H 0.099 0.901 14 C 0.057 3.943 15 N -0.690 5.690 16 Si 0.924 3.076 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.256 1.256 20 N -0.505 5.505 21 C 0.185 3.815 22 C 0.146 3.854 23 N -0.555 5.555 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.172 0.828 30 H 0.133 0.867 31 H 0.282 0.718 32 H 0.133 0.867 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 -4.387 -0.026 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.003 4.003 3 O -0.201 6.201 4 C 0.146 3.854 5 N -0.235 5.235 6 C -0.016 4.016 7 C -0.097 4.097 8 C -0.336 4.336 9 C 0.015 3.985 10 N -0.307 5.307 11 C 0.144 3.856 12 C -0.397 4.397 13 H 0.117 0.883 14 C -0.173 4.173 15 N -0.309 5.309 16 Si 0.747 3.253 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.180 1.180 20 N -0.221 5.221 21 C 0.006 3.994 22 C -0.021 4.021 23 N -0.283 5.283 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.189 0.811 30 H 0.150 0.850 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.609 -3.950 -0.007 10.389 hybrid contribution 0.636 -0.047 -0.007 0.637 sum -8.974 -3.997 -0.014 9.824 Atomic orbital electron populations 1.21814 0.93010 1.02720 1.03359 1.22585 0.94470 0.80663 1.02552 1.85980 1.15452 1.30442 1.88212 1.20438 0.85011 0.85555 0.94411 1.67368 1.16173 1.22048 1.17939 1.23098 0.85790 0.99786 0.92973 1.20264 0.95130 0.94417 0.99895 1.19369 0.90205 0.96950 1.27080 1.22629 0.89466 0.96750 0.89660 1.68659 1.13400 1.25662 1.22993 1.19949 0.94605 0.82254 0.88808 1.19597 0.89601 0.93561 1.36911 0.88284 1.26279 1.01647 0.95534 0.93791 1.70106 1.37081 0.99542 1.24198 0.86028 0.80322 0.79228 0.79718 1.18898 1.19651 1.18003 1.69358 1.02165 1.32544 1.18012 1.23022 0.92933 0.93942 0.89469 1.22914 0.88874 0.96972 0.93298 1.67835 1.06891 1.33860 1.19692 0.91647 0.91651 0.90281 0.91645 0.91644 0.81074 0.85009 0.90656 0.84980 0.81659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.92 16 2 C 0.07 0.87 6.00 37.16 0.22 1.09 16 3 O -0.30 -4.76 10.19 -17.85 -0.18 -4.95 16 4 C 0.45 7.92 8.48 -91.05 -0.77 7.15 16 5 N -0.51 -9.31 10.45 -14.37 -0.15 -9.46 16 6 C 0.15 2.56 10.73 -16.77 -0.18 2.38 16 7 C -0.09 -1.60 5.91 -104.58 -0.62 -2.22 16 8 C -0.32 -6.53 5.94 -104.27 -0.62 -7.15 16 9 C 0.19 3.99 10.72 -16.82 -0.18 3.81 16 10 N -0.59 -14.41 10.34 -12.41 -0.13 -14.54 16 11 C 0.37 9.80 7.35 -158.16 -1.16 8.63 16 12 C -0.36 -9.17 9.35 -37.81 -0.35 -9.52 16 13 H 0.10 2.37 7.85 -52.49 -0.41 1.96 16 14 C 0.06 1.32 5.50 -17.34 -0.10 1.22 16 15 N -0.69 -16.63 11.40 55.56 0.63 -15.99 16 16 Si 0.92 16.87 29.56 -169.99 -5.02 11.84 16 17 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 18 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 19 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 20 N -0.51 -12.88 7.82 -12.41 -0.10 -12.98 16 21 C 0.18 4.02 10.72 -16.82 -0.18 3.84 16 22 C 0.15 2.37 10.73 -16.76 -0.18 2.19 16 23 N -0.56 -9.31 9.19 -14.37 -0.13 -9.44 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 29 H 0.17 2.53 6.42 -52.48 -0.34 2.19 16 30 H 0.13 2.23 6.42 -52.49 -0.34 1.90 16 31 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 32 H 0.13 2.45 6.42 -52.49 -0.34 2.12 16 33 H 0.17 2.27 6.42 -52.49 -0.34 1.93 16 LS Contribution 294.40 15.07 4.44 4.44 Total: -1.00 -29.36 294.40 -7.38 -36.75 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.00 Total: 3.83 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -3.74 Total: 10.50 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.13 Total: -62.41 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.18 Total: -4.95 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.02 Total: 11.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.36 -7.38 -36.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241551084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.208 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds