Wall clock time and date at job start Mon Mar 30 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46825 * 2 1 4 4 C 1.35387 * 116.99701 * 179.97438 * 3 2 1 5 5 N 1.32433 * 119.01531 * 179.97438 * 4 3 2 6 6 C 1.32051 * 120.92191 * 179.97438 * 5 4 3 7 7 C 1.40073 * 118.98461 * 0.02562 * 6 5 4 8 8 C 1.47866 * 120.89174 * 179.97438 * 7 6 5 9 9 C 1.40477 * 120.79354 * 180.02562 * 8 7 6 10 10 N 1.31570 * 119.09044 * 180.02562 * 9 8 7 11 11 C 1.33662 * 120.83125 * 359.97438 * 10 9 8 12 12 C 1.41037 * 119.12950 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00375 * 0.02562 * 12 11 10 14 14 C 1.40125 * 120.00074 * 180.02562 * 12 11 10 15 15 N 1.30669 * 120.00113 * 0.02562 * 14 12 11 16 16 Si 1.86810 * 120.00106 * 179.72736 * 14 12 11 17 17 H 1.48498 * 109.46908 * 89.99882 * 16 14 12 18 18 H 1.48497 * 109.46933 * 209.99933 * 16 14 12 19 19 H 1.48500 * 109.46636 * 330.00039 * 16 14 12 20 20 N 1.33659 * 121.74287 * 0.26476 * 11 10 9 21 21 C 1.31574 * 120.83455 * 359.46719 * 20 11 10 22 22 C 1.40079 * 118.22273 * 0.25274 * 7 6 5 23 23 N 1.32058 * 118.97709 * 359.48999 * 22 7 6 24 24 H 1.08996 * 109.47106 * 299.99836 * 1 2 3 25 25 H 1.09008 * 109.46982 * 60.00060 * 1 2 3 26 26 H 1.08994 * 109.46989 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46960 * 240.00444 * 2 1 3 28 28 H 1.09000 * 109.47139 * 120.00218 * 2 1 3 29 29 H 1.08008 * 120.50904 * 179.97438 * 6 5 4 30 30 H 1.07995 * 120.45602 * 359.97438 * 9 8 7 31 31 H 0.97000 * 119.99835 * 179.97438 * 15 14 12 32 32 H 1.07994 * 120.45492 * 180.23636 * 21 20 11 33 33 H 1.07998 * 120.51529 * 179.72714 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3485 1.5247 0.0005 5 7 3.8336 2.7570 0.0000 6 6 5.1362 2.9735 0.0010 7 6 6.0067 1.8760 0.0021 8 6 7.4726 2.0697 0.0027 9 6 8.3437 0.9676 0.0032 10 7 9.6423 1.1787 0.0042 11 6 10.1344 2.4215 0.0043 12 6 11.5326 2.6063 0.0059 13 1 12.1905 1.7498 0.0067 14 6 12.0681 3.9011 0.0065 15 7 11.2722 4.9374 0.0060 16 14 13.9201 4.1459 0.0164 17 1 14.4186 4.2082 -1.3810 18 1 14.2480 5.4141 0.7159 19 1 14.5657 3.0100 0.7222 20 7 9.3364 3.4937 0.0085 21 6 8.0274 3.3603 0.0023 22 6 5.4513 0.5900 -0.0034 23 7 4.1371 0.4607 0.0010 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 5.5246 3.9813 0.0002 30 1 7.9527 -0.0391 0.0036 31 1 11.6430 5.8338 0.0068 32 1 7.3885 4.2309 0.0020 33 1 6.0881 -0.2823 -0.0072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241551084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:25 Heat of formation + Delta-G solvation = 34.748374 kcal Electronic energy + Delta-G solvation = -19213.921058 eV Core-core repulsion = 16046.610794 eV Total energy + Delta-G solvation = -3167.310263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.15823 -40.77159 -39.34238 -35.95945 -34.88110 -34.24037 -33.71320 -32.44931 -30.60694 -27.92688 -26.39109 -25.18540 -24.25235 -23.55485 -22.79341 -20.10133 -19.73037 -18.82385 -17.71366 -17.55322 -17.07178 -16.68965 -16.29353 -15.77530 -15.49225 -15.10989 -14.92308 -14.68909 -14.42777 -13.72656 -13.47685 -13.44301 -13.10718 -12.94459 -12.80461 -12.66158 -12.50423 -12.00812 -11.96551 -11.84577 -11.40285 -11.22189 -11.06834 -10.67721 -10.26487 -9.29843 -9.11918 -8.52435 -6.75291 -0.33456 0.06711 0.91750 1.07570 1.41093 1.52902 1.57360 1.61012 2.17127 2.61711 2.90712 3.06250 3.62195 3.64944 3.88588 3.93037 3.98860 4.03811 4.07695 4.11876 4.20029 4.32720 4.44259 4.78730 4.81096 4.94570 4.97203 5.11762 5.18200 5.25282 5.39977 5.63605 5.80000 6.06531 6.20966 6.42610 6.51323 7.07536 7.11228 8.13053 8.26189 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.066893 B = 0.003305 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.478545 B = 8470.646773 C = 8868.671405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 O -0.309 6.309 4 C 0.449 3.551 5 N -0.534 5.534 6 C 0.160 3.840 7 C -0.110 4.110 8 C -0.304 4.304 9 C 0.180 3.820 10 N -0.616 5.616 11 C 0.351 3.649 12 C -0.408 4.408 13 H 0.096 0.904 14 C 0.020 3.980 15 N -0.729 5.729 16 Si 1.000 3.000 17 H -0.259 1.259 18 H -0.262 1.262 19 H -0.255 1.255 20 N -0.539 5.539 21 C 0.167 3.833 22 C 0.162 3.838 23 N -0.556 5.556 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.190 0.810 30 H 0.172 0.828 31 H 0.290 0.710 32 H 0.158 0.842 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 -5.280 -0.022 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.010 4.010 3 O -0.212 6.212 4 C 0.147 3.853 5 N -0.258 5.258 6 C -0.006 4.006 7 C -0.116 4.116 8 C -0.315 4.315 9 C 0.006 3.994 10 N -0.335 5.335 11 C 0.118 3.882 12 C -0.441 4.441 13 H 0.114 0.886 14 C -0.206 4.206 15 N -0.349 5.349 16 Si 0.819 3.181 17 H -0.183 1.183 18 H -0.186 1.186 19 H -0.178 1.178 20 N -0.255 5.255 21 C -0.009 4.009 22 C -0.004 4.004 23 N -0.285 5.285 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.189 0.811 31 H 0.101 0.899 32 H 0.175 0.825 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.000 -4.863 -0.004 12.027 hybrid contribution 0.616 0.091 -0.011 0.623 sum -10.384 -4.772 -0.015 11.428 Atomic orbital electron populations 1.21848 0.90437 1.04565 1.03381 1.22949 0.96458 0.78856 1.02755 1.86012 1.14554 1.33037 1.87608 1.20799 0.85890 0.85693 0.92888 1.67455 1.16508 1.22589 1.19281 1.23405 0.85509 1.00587 0.91071 1.20118 0.93672 0.95465 1.02330 1.19483 0.91446 0.96145 1.24424 1.23282 0.88620 0.98802 0.88687 1.68685 1.15203 1.25180 1.24425 1.20323 0.95439 0.83042 0.89401 1.19862 0.89776 0.94661 1.39840 0.88608 1.27151 1.06317 0.94481 0.92606 1.70157 1.39234 1.00145 1.25402 0.84926 0.74060 0.79276 0.79843 1.18328 1.18590 1.17840 1.69333 1.03625 1.32894 1.19680 1.23539 0.92421 0.95806 0.89100 1.23371 0.89040 0.97350 0.90646 1.67979 1.06857 1.33328 1.20286 0.91622 0.91624 0.87485 0.91402 0.91408 0.79368 0.81125 0.89927 0.82463 0.78913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.07 1.39 6.00 71.98 0.43 1.82 16 3 O -0.31 -9.29 10.19 -86.80 -0.88 -10.17 16 4 C 0.45 14.94 8.48 180.50 1.53 16.47 16 5 N -0.53 -18.43 10.45 -312.31 -3.26 -21.69 16 6 C 0.16 5.15 10.73 85.11 0.91 6.07 16 7 C -0.11 -3.63 5.91 -19.84 -0.12 -3.74 16 8 C -0.30 -11.89 5.94 -19.64 -0.12 -12.00 16 9 C 0.18 7.32 10.72 85.28 0.91 8.24 16 10 N -0.62 -30.53 10.34 -193.17 -2.00 -32.53 16 11 C 0.35 18.90 7.35 134.89 0.99 19.90 16 12 C -0.41 -21.35 9.35 23.41 0.22 -21.13 16 13 H 0.10 4.81 7.85 -2.91 -0.02 4.78 16 14 C 0.02 0.95 5.50 85.32 0.47 1.42 16 15 N -0.73 -36.14 11.40 21.85 0.25 -35.89 16 16 Si 1.00 35.04 29.56 68.60 2.03 37.07 16 17 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 18 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 19 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 20 N -0.54 -28.15 7.82 -193.17 -1.51 -29.67 16 21 C 0.17 7.28 10.72 85.28 0.91 8.19 16 22 C 0.16 4.79 10.73 85.11 0.91 5.71 16 23 N -0.56 -17.17 9.19 -312.30 -2.87 -20.04 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.42 8.09 -2.38 -0.02 1.40 16 28 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 29 H 0.19 5.22 6.42 -2.91 -0.02 5.20 16 30 H 0.17 5.33 6.42 -2.91 -0.02 5.31 16 31 H 0.29 12.71 8.29 -92.71 -0.77 11.94 16 32 H 0.16 5.75 6.42 -2.91 -0.02 5.73 16 33 H 0.19 4.54 6.42 -2.91 -0.02 4.52 16 Total: -1.00 -64.91 294.40 0.71 -64.19 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 1.16 Total: 19.16 kcal Atomic # 6 Polarization: 21.76 SS G_CDS: 7.80 Total: 29.56 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -9.39 Total: -139.81 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.88 Total: -10.17 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Total: -64.91 0.71 -64.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241551084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.942 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds