Wall clock time and date at job start Mon Mar 30 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42891 * 109.47390 * 2 1 4 4 C 1.35409 * 117.00156 * 179.97438 * 3 2 1 5 5 N 1.32391 * 119.04691 * 179.97438 * 4 3 2 6 6 C 1.32113 * 120.89102 * 179.97438 * 5 4 3 7 7 C 1.39794 * 119.01808 * 0.02562 * 6 5 4 8 8 C 1.48244 * 120.86130 * 179.97438 * 7 6 5 9 9 C 1.40082 * 119.99255 * 5.02521 * 8 7 6 10 10 N 1.32153 * 120.29323 * 179.97438 * 9 8 7 11 11 C 1.31899 * 120.28613 * 359.68359 * 10 9 8 12 12 C 1.40808 * 119.97426 * 0.56775 * 11 10 9 13 13 C 1.41317 * 120.14532 * 179.73372 * 12 11 10 14 14 H 1.08008 * 119.99958 * 6.03039 * 13 12 11 15 15 C 1.40041 * 120.00078 * 185.76226 * 13 12 11 16 16 N 1.30737 * 120.00099 * 354.06787 * 15 13 12 17 17 Si 1.86801 * 119.99981 * 174.07009 * 15 13 12 18 18 H 1.48496 * 109.47362 * 59.99885 * 17 15 13 19 19 H 1.48500 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47062 * 299.99594 * 17 15 13 21 21 N 1.32534 * 119.98601 * 184.99942 * 8 7 6 22 22 C 1.39787 * 118.27063 * 0.25061 * 7 6 5 23 23 N 1.32120 * 119.01985 * 359.48778 * 22 7 6 24 24 H 1.09004 * 109.46992 * 60.00281 * 1 2 3 25 25 H 1.08998 * 109.47447 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47051 * 300.00534 * 1 2 3 27 27 H 1.09006 * 109.47347 * 239.99618 * 2 1 3 28 28 H 1.09006 * 109.46734 * 120.00195 * 2 1 3 29 29 H 1.08004 * 120.49068 * 180.02562 * 6 5 4 30 30 H 1.08004 * 119.84811 * 359.97050 * 9 8 7 31 31 H 1.08007 * 120.01206 * 180.30236 * 11 10 9 32 32 H 0.96997 * 119.99977 * 180.02562 * 16 15 13 33 33 H 1.08004 * 120.49061 * 179.72933 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3488 1.5246 0.0005 5 7 3.8344 2.7562 0.0000 6 6 5.1379 2.9713 0.0010 7 6 6.0060 1.8756 0.0021 8 6 7.4757 2.0698 0.0027 9 6 8.0115 3.3598 0.1084 10 7 9.3207 3.5398 0.1101 11 6 10.1344 2.5057 0.0184 12 6 9.6084 1.2044 -0.0938 13 6 10.4768 0.0944 -0.1979 14 1 11.5431 0.2314 -0.0939 15 6 9.9545 -1.1840 -0.4303 16 7 8.6605 -1.3704 -0.4356 17 14 11.1066 -2.6229 -0.7329 18 1 11.9907 -2.8055 0.4462 19 1 10.3104 -3.8574 -0.9498 20 1 11.9347 -2.3497 -1.9349 21 7 8.2822 1.0228 -0.0963 22 6 5.4522 0.5921 -0.0033 23 7 4.1375 0.4613 0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.5270 3.9788 0.0011 30 1 7.3516 4.2110 0.1890 31 1 11.2037 2.6575 0.0251 32 1 8.2987 -2.2559 -0.5962 33 1 6.0897 -0.2797 -0.0071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241551324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:23 Heat of formation + Delta-G solvation = 32.357307 kcal Electronic energy + Delta-G solvation = -19630.309700 eV Core-core repulsion = 16462.895753 eV Total energy + Delta-G solvation = -3167.413948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31667 -40.79347 -39.44566 -35.96792 -35.01442 -34.68333 -33.30822 -32.42837 -30.54124 -28.03831 -26.10736 -25.78021 -24.02320 -23.65905 -22.81773 -19.99595 -19.66232 -18.61898 -17.78883 -17.66593 -17.21598 -16.67572 -16.48503 -15.91287 -15.60435 -15.17475 -14.88773 -14.74588 -14.49524 -13.51377 -13.50160 -13.37141 -13.27970 -12.99925 -12.78386 -12.56682 -12.35404 -12.06913 -11.99096 -11.93789 -11.67142 -11.51110 -11.20510 -10.35423 -10.32050 -9.38970 -9.24503 -8.41914 -6.65897 -0.49397 -0.03316 0.80623 1.14409 1.44094 1.45723 1.55161 1.57202 2.19961 2.60099 2.86174 2.95161 3.37994 3.55357 3.62172 3.80791 3.92729 4.03526 4.11993 4.14722 4.40871 4.44446 4.64435 4.73258 4.92128 4.92190 4.98975 5.08612 5.17597 5.20959 5.22561 5.61157 5.72944 6.05431 6.10479 6.47275 6.70510 6.92239 7.27740 7.82729 8.29058 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.005082 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.920703 B = 5508.161001 C = 6915.218819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 O -0.299 6.299 4 C 0.481 3.519 5 N -0.536 5.536 6 C 0.212 3.788 7 C -0.174 4.174 8 C 0.142 3.858 9 C -0.111 4.111 10 N -0.435 5.435 11 C -0.077 4.077 12 C 0.181 3.819 13 C -0.435 4.435 14 H 0.104 0.896 15 C 0.028 3.972 16 N -0.743 5.743 17 Si 0.990 3.010 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.259 1.259 21 N -0.472 5.472 22 C 0.218 3.782 23 N -0.573 5.573 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.211 0.789 30 H 0.165 0.835 31 H 0.151 0.849 32 H 0.286 0.714 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 -1.866 0.011 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.014 4.014 3 O -0.201 6.201 4 C 0.179 3.821 5 N -0.262 5.262 6 C 0.045 3.955 7 C -0.180 4.180 8 C -0.007 4.007 9 C -0.269 4.269 10 N -0.146 5.146 11 C -0.246 4.246 12 C 0.055 3.945 13 C -0.466 4.466 14 H 0.122 0.878 15 C -0.196 4.196 16 N -0.364 5.364 17 Si 0.810 3.190 18 H -0.181 1.181 19 H -0.194 1.194 20 H -0.184 1.184 21 N -0.190 5.190 22 C 0.052 3.948 23 N -0.303 5.303 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.227 0.773 30 H 0.182 0.818 31 H 0.168 0.832 32 H 0.097 0.903 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.891 -2.036 -0.010 11.080 hybrid contribution 1.569 -0.657 -0.115 1.705 sum -9.323 -2.692 -0.125 9.704 Atomic orbital electron populations 1.21844 0.89866 1.04667 1.03644 1.23026 0.96811 0.78671 1.02846 1.86045 1.14013 1.33249 1.86817 1.21030 0.86122 0.85799 0.89127 1.67669 1.15819 1.21925 1.20738 1.23631 0.85186 1.00442 0.86231 1.20209 0.93343 0.95996 1.08485 1.20568 0.92337 0.91895 0.95882 1.23001 0.92146 0.96258 1.15542 1.67722 1.04737 1.34640 1.07549 1.23456 0.99654 0.89572 1.11947 1.19732 0.89938 0.93777 0.91097 1.20054 0.95259 0.91257 1.40012 0.87801 1.26986 0.97115 1.02737 0.92792 1.70064 1.14255 1.24652 1.27393 0.85116 0.78251 0.75571 0.80041 1.18085 1.19421 1.18351 1.69435 1.03669 1.29288 1.16617 1.23368 0.88528 0.98186 0.84669 1.68157 1.06512 1.33616 1.21965 0.91339 0.87517 0.91297 0.91490 0.91430 0.77304 0.81782 0.83165 0.90326 0.80426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.06 1.45 6.00 71.98 0.43 1.88 16 3 O -0.30 -9.33 10.19 -87.03 -0.89 -10.22 16 4 C 0.48 17.10 8.48 180.53 1.53 18.64 16 5 N -0.54 -18.78 10.45 -312.56 -3.27 -22.04 16 6 C 0.21 7.02 10.69 85.03 0.91 7.93 16 7 C -0.17 -6.83 5.90 -19.87 -0.12 -6.95 16 8 C 0.14 6.41 6.74 42.15 0.28 6.70 16 9 C -0.11 -4.73 10.64 85.09 0.90 -3.83 16 10 N -0.44 -20.21 10.47 -192.02 -2.01 -22.22 16 11 C -0.08 -3.70 10.97 85.31 0.94 -2.76 16 12 C 0.18 9.29 6.54 40.22 0.26 9.56 16 13 C -0.43 -21.20 9.15 23.47 0.21 -20.98 16 14 H 0.10 4.61 7.86 -2.91 -0.02 4.58 16 15 C 0.03 1.26 5.49 85.29 0.47 1.73 16 16 N -0.74 -35.59 11.51 21.84 0.25 -35.34 16 17 Si 0.99 34.20 29.56 68.60 2.03 36.23 16 18 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 19 H -0.27 -8.97 7.11 99.48 0.71 -8.27 16 20 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 21 N -0.47 -24.11 7.27 -177.67 -1.29 -25.40 16 22 C 0.22 8.68 10.85 85.02 0.92 9.60 16 23 N -0.57 -21.12 9.20 -312.56 -2.87 -23.99 16 24 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.60 8.09 -2.38 -0.02 1.58 16 28 H 0.07 1.60 8.09 -2.38 -0.02 1.58 16 29 H 0.21 5.39 6.35 -2.91 -0.02 5.37 16 30 H 0.17 5.60 6.30 -2.91 -0.02 5.58 16 31 H 0.15 6.46 8.06 -2.91 -0.02 6.43 16 32 H 0.29 12.37 8.29 -92.71 -0.77 11.60 16 33 H 0.18 7.70 7.66 -2.91 -0.02 7.67 16 Total: -1.00 -60.18 296.83 0.59 -59.59 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 1.15 Total: 23.37 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 7.49 Total: 20.02 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -9.19 Total: -129.00 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.89 Total: -10.22 kcal Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal Total: -60.18 0.59 -59.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241551324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.952 kcal (2) G-P(sol) polarization free energy of solvation -60.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds