Wall clock time and date at job start Mon Mar 30 2020 01:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32112 * 120.47778 * 2 1 4 4 C 1.32546 * 120.86992 * 180.02562 * 3 2 1 5 5 N 1.38295 * 119.06336 * 180.02562 * 4 3 2 6 6 N 1.32572 * 121.86506 * 359.97438 * 4 3 2 7 7 C 1.32081 * 120.87375 * 359.73143 * 6 4 3 8 8 C 1.39781 * 120.48014 * 180.02562 * 2 1 3 9 9 C 1.48243 * 120.84142 * 359.95889 * 8 2 1 10 10 C 1.39462 * 119.65106 * 132.75793 * 9 8 2 11 11 C 1.38201 * 119.14176 * 179.74218 * 10 9 8 12 12 C 1.39442 * 118.45984 * 0.49438 * 11 10 9 13 13 O 1.35720 * 120.38201 * 179.75946 * 12 11 10 14 14 C 1.34808 * 117.00119 * 5.07409 * 13 12 11 15 15 H 1.07999 * 119.99842 * 354.95000 * 14 13 12 16 16 C 1.38649 * 120.00185 * 174.94761 * 14 13 12 17 17 N 1.31566 * 119.99770 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00159 * 179.72836 * 16 14 13 19 19 H 1.48497 * 109.47488 * 180.27474 * 18 16 14 20 20 H 1.48498 * 109.47231 * 300.27521 * 18 16 14 21 21 H 1.48505 * 109.47212 * 60.27431 * 18 16 14 22 22 C 1.38926 * 119.23666 * 359.47903 * 12 11 10 23 23 N 1.31692 * 120.79126 * 0.27690 * 22 12 11 24 24 H 1.09001 * 109.47650 * 264.59974 * 1 2 3 25 25 H 1.09006 * 109.47312 * 24.59686 * 1 2 3 26 26 H 1.08995 * 109.47407 * 144.59438 * 1 2 3 27 27 H 0.96993 * 120.00172 * 359.97438 * 5 4 3 28 28 H 0.97002 * 119.99699 * 179.97438 * 5 4 3 29 29 H 1.07996 * 120.48138 * 180.26201 * 7 6 4 30 30 H 1.07996 * 120.43191 * 359.97438 * 10 9 8 31 31 H 1.07994 * 120.76744 * 180.26718 * 11 10 9 32 32 H 0.97001 * 119.99922 * 359.72058 * 17 16 14 33 33 H 1.07993 * 119.60402 * 180.29820 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1770 1.1386 0.0000 4 6 3.5025 1.1476 -0.0005 5 7 4.1660 2.3610 0.0001 6 7 4.2100 0.0265 -0.0005 7 6 3.6131 -1.1517 0.0053 8 6 2.2160 -1.2046 -0.0005 9 6 1.5046 -2.5052 -0.0002 10 6 1.8948 -3.5053 -0.8904 11 6 1.2278 -4.7156 -0.8774 12 6 0.1777 -4.8860 0.0240 13 8 -0.5072 -6.0569 0.0667 14 6 -0.0574 -7.0580 -0.7162 15 1 0.7605 -6.8832 -1.3995 16 6 -0.6446 -8.3119 -0.6440 17 7 -1.6412 -8.5246 0.1881 18 14 -0.0262 -9.6969 -1.7342 19 1 -0.8190 -10.9249 -1.4720 20 1 -0.1731 -9.3080 -3.1598 21 1 1.4051 -9.9591 -1.4376 22 6 -0.1556 -3.8454 0.8820 23 7 0.5035 -2.7058 0.8476 24 1 -0.3634 -0.0967 1.0231 25 1 -0.3634 0.9345 -0.4278 26 1 -0.3634 -0.8376 -0.5954 27 1 3.6617 3.1896 0.0004 28 1 5.1357 2.3835 0.0001 29 1 4.1957 -2.0610 0.0095 30 1 2.7101 -3.3375 -1.5785 31 1 1.5110 -5.5097 -1.5523 32 1 -1.9624 -7.8053 0.7541 33 1 -0.9648 -3.9726 1.5858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241645764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:12 Heat of formation + Delta-G solvation = 50.580292 kcal Electronic energy + Delta-G solvation = -19482.202925 eV Core-core repulsion = 16315.579185 eV Total energy + Delta-G solvation = -3166.623740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92074 -39.60377 -37.48237 -35.20026 -34.05970 -32.63840 -31.64811 -31.31616 -29.09216 -27.62681 -25.24973 -23.85017 -22.91761 -22.43105 -21.39246 -18.66635 -18.12955 -17.35613 -17.20395 -16.12333 -15.83528 -15.56537 -15.05198 -14.26288 -14.20721 -13.99890 -13.91402 -13.64453 -13.05098 -12.98261 -12.67000 -12.42628 -12.27417 -11.94286 -11.05081 -10.95865 -10.87109 -10.67473 -10.41015 -10.27758 -9.96807 -9.17769 -9.13289 -9.00827 -8.84971 -8.33790 -7.36455 -6.99011 -4.26729 1.07937 1.26424 1.88659 2.12089 3.12824 3.14043 3.18156 3.34953 3.94238 3.94915 4.21797 4.41662 4.65181 4.70963 4.89797 4.98424 5.06760 5.25736 5.40635 5.65321 5.70385 5.75164 5.83562 5.96744 6.05021 6.14852 6.36770 6.44336 6.73684 6.87622 6.93661 7.18824 7.21699 7.28725 7.43366 8.15511 8.42208 8.57902 8.67957 9.31705 10.44518 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042764 B = 0.003700 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.595226 B = 7566.296823 C = 8026.932685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.239 3.761 3 N -0.573 5.573 4 C 0.555 3.445 5 N -0.827 5.827 6 N -0.575 5.575 7 C 0.198 3.802 8 C -0.168 4.168 9 C 0.059 3.941 10 C -0.099 4.099 11 C -0.196 4.196 12 C 0.110 3.890 13 O -0.185 6.185 14 C -0.472 4.472 15 H 0.087 0.913 16 C 0.014 3.986 17 N -0.868 5.868 18 Si 1.096 2.904 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.031 3.969 23 N -0.428 5.428 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.411 0.589 28 H 0.411 0.589 29 H 0.167 0.833 30 H 0.120 0.880 31 H 0.139 0.861 32 H 0.285 0.715 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.020 13.869 -2.106 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.091 3.909 3 N -0.296 5.296 4 C 0.197 3.803 5 N -0.376 5.376 6 N -0.297 5.297 7 C 0.031 3.969 8 C -0.176 4.176 9 C -0.077 4.077 10 C -0.120 4.120 11 C -0.222 4.222 12 C 0.053 3.947 13 O -0.086 6.086 14 C -0.548 4.548 15 H 0.104 0.896 16 C -0.193 4.193 17 N -0.498 5.498 18 Si 0.919 3.081 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.133 4.133 23 N -0.137 5.137 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.242 0.758 28 H 0.242 0.758 29 H 0.184 0.816 30 H 0.138 0.862 31 H 0.156 0.844 32 H 0.095 0.905 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.785 13.655 -1.802 15.821 hybrid contribution 0.485 0.481 -0.283 0.740 sum 8.270 14.136 -2.085 16.510 Atomic orbital electron populations 1.20696 0.87535 1.02784 1.04168 1.21516 0.97075 0.86143 0.86208 1.67667 1.07358 1.31054 1.23566 1.19311 0.85393 0.86811 0.88808 1.41610 1.09505 1.03601 1.82852 1.67819 1.40620 0.97961 1.23337 1.22997 0.91042 0.94664 0.88221 1.19674 0.94312 0.93455 1.10179 1.18575 0.97869 0.92785 0.98481 1.21660 0.99298 0.92826 0.98166 1.21471 0.99269 0.98598 1.02854 1.20388 0.91421 0.88516 0.94423 1.83647 1.48106 1.17765 1.59086 1.22298 1.21493 0.89986 1.21034 0.89580 1.26654 0.95217 0.97685 0.99730 1.70584 1.22367 1.36984 1.19897 0.83107 0.76033 0.74527 0.74463 1.19571 1.20515 1.20512 1.21726 1.02459 0.88243 1.00839 1.67471 1.05337 1.21313 1.19617 0.89035 0.91115 0.90075 0.75812 0.75797 0.81580 0.86222 0.84353 0.90476 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 8.97 36.00 0.32 -0.98 16 2 C 0.24 3.71 6.85 -81.90 -0.56 3.15 16 3 N -0.57 -8.63 10.38 -9.90 -0.10 -8.73 16 4 C 0.56 7.78 8.66 -322.80 -2.80 4.98 16 5 N -0.83 -7.91 9.06 29.76 0.27 -7.64 16 6 N -0.57 -8.37 10.44 -13.67 -0.14 -8.51 16 7 C 0.20 2.88 10.75 -16.86 -0.18 2.70 16 8 C -0.17 -2.69 5.63 -104.62 -0.59 -3.28 16 9 C 0.06 1.04 5.57 -82.92 -0.46 0.58 16 10 C -0.10 -1.73 9.53 -39.14 -0.37 -2.10 16 11 C -0.20 -3.95 9.25 -39.15 -0.36 -4.31 16 12 C 0.11 2.45 6.67 -38.88 -0.26 2.19 16 13 O -0.18 -4.81 9.16 0.21 0.00 -4.81 16 14 C -0.47 -12.38 9.49 30.88 0.29 -12.09 16 15 H 0.09 2.10 5.25 -52.49 -0.28 1.82 16 16 C 0.01 0.38 5.49 -17.51 -0.10 0.28 16 17 N -0.87 -24.49 13.70 55.48 0.76 -23.73 16 18 Si 1.10 22.17 29.92 -169.99 -5.09 17.09 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 22 C 0.03 0.62 11.14 -17.36 -0.19 0.42 16 23 N -0.43 -8.07 8.83 -9.62 -0.08 -8.16 16 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.20 7.09 -51.93 -0.37 0.83 16 27 H 0.41 3.13 8.94 -40.82 -0.36 2.77 16 28 H 0.41 3.09 8.94 -40.82 -0.36 2.73 16 29 H 0.17 2.04 8.04 -52.49 -0.42 1.62 16 30 H 0.12 1.73 8.01 -52.49 -0.42 1.31 16 31 H 0.14 2.75 5.75 -52.49 -0.30 2.45 16 32 H 0.29 8.18 7.97 -40.82 -0.33 7.85 16 33 H 0.15 2.80 8.06 -52.49 -0.42 2.37 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -30.29 295.14 -8.10 -38.39 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -2.91 Total: 10.09 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -5.26 Total: -8.44 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.70 Total: -56.76 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: 0.00 Total: -4.81 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.09 Total: 17.09 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.29 -8.10 -38.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241645764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.966 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds