Wall clock time and date at job start Mon Mar 30 2020 01:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32112 * 120.47778 * 2 1 4 4 C 1.32546 * 120.86992 * 180.02562 * 3 2 1 5 5 N 1.38295 * 119.06336 * 180.02562 * 4 3 2 6 6 N 1.32572 * 121.86506 * 359.97438 * 4 3 2 7 7 C 1.32081 * 120.87375 * 359.73143 * 6 4 3 8 8 C 1.39781 * 120.48014 * 180.02562 * 2 1 3 9 9 C 1.48243 * 120.84142 * 359.95889 * 8 2 1 10 10 C 1.39462 * 119.65106 * 132.75793 * 9 8 2 11 11 C 1.38201 * 119.14176 * 179.74218 * 10 9 8 12 12 C 1.39442 * 118.45984 * 0.49438 * 11 10 9 13 13 O 1.35720 * 120.38201 * 179.75946 * 12 11 10 14 14 C 1.34808 * 117.00119 * 5.07409 * 13 12 11 15 15 H 1.07999 * 119.99842 * 354.95000 * 14 13 12 16 16 C 1.38649 * 120.00185 * 174.94761 * 14 13 12 17 17 N 1.31566 * 119.99770 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00159 * 179.72836 * 16 14 13 19 19 H 1.48497 * 109.47488 * 180.27474 * 18 16 14 20 20 H 1.48498 * 109.47231 * 300.27521 * 18 16 14 21 21 H 1.48505 * 109.47212 * 60.27431 * 18 16 14 22 22 C 1.38926 * 119.23666 * 359.47903 * 12 11 10 23 23 N 1.31692 * 120.79126 * 0.27690 * 22 12 11 24 24 H 1.09001 * 109.47650 * 264.59974 * 1 2 3 25 25 H 1.09006 * 109.47312 * 24.59686 * 1 2 3 26 26 H 1.08995 * 109.47407 * 144.59438 * 1 2 3 27 27 H 0.96993 * 120.00172 * 359.97438 * 5 4 3 28 28 H 0.97002 * 119.99699 * 179.97438 * 5 4 3 29 29 H 1.07996 * 120.48138 * 180.26201 * 7 6 4 30 30 H 1.07996 * 120.43191 * 359.97438 * 10 9 8 31 31 H 1.07994 * 120.76744 * 180.26718 * 11 10 9 32 32 H 0.97001 * 119.99922 * 359.72058 * 17 16 14 33 33 H 1.07993 * 119.60402 * 180.29820 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1770 1.1386 0.0000 4 6 3.5025 1.1476 -0.0005 5 7 4.1660 2.3610 0.0001 6 7 4.2100 0.0265 -0.0005 7 6 3.6131 -1.1517 0.0053 8 6 2.2160 -1.2046 -0.0005 9 6 1.5046 -2.5052 -0.0002 10 6 1.8948 -3.5053 -0.8904 11 6 1.2278 -4.7156 -0.8774 12 6 0.1777 -4.8860 0.0240 13 8 -0.5072 -6.0569 0.0667 14 6 -0.0574 -7.0580 -0.7162 15 1 0.7605 -6.8832 -1.3995 16 6 -0.6446 -8.3119 -0.6440 17 7 -1.6412 -8.5246 0.1881 18 14 -0.0262 -9.6969 -1.7342 19 1 -0.8190 -10.9249 -1.4720 20 1 -0.1731 -9.3080 -3.1598 21 1 1.4051 -9.9591 -1.4376 22 6 -0.1556 -3.8454 0.8820 23 7 0.5035 -2.7058 0.8476 24 1 -0.3634 -0.0967 1.0231 25 1 -0.3634 0.9345 -0.4278 26 1 -0.3634 -0.8376 -0.5954 27 1 3.6617 3.1896 0.0004 28 1 5.1357 2.3835 0.0001 29 1 4.1957 -2.0610 0.0095 30 1 2.7101 -3.3375 -1.5785 31 1 1.5110 -5.5097 -1.5523 32 1 -1.9624 -7.8053 0.7541 33 1 -0.9648 -3.9726 1.5858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241645764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:12 Heat of formation + Delta-G solvation = 31.198878 kcal Electronic energy + Delta-G solvation = -19483.043366 eV Core-core repulsion = 16315.579185 eV Total energy + Delta-G solvation = -3167.464181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.11529 -41.18611 -39.14808 -36.28863 -35.18492 -34.45272 -33.11861 -32.70568 -30.37961 -28.96957 -27.02797 -25.12613 -24.43608 -23.71343 -22.83358 -20.42856 -19.25769 -18.87969 -18.33179 -17.61986 -17.46104 -16.58069 -16.23748 -15.92096 -15.64876 -15.58989 -15.38852 -14.98987 -14.39694 -14.31936 -14.01761 -13.84678 -13.75912 -13.12437 -12.58179 -12.55490 -12.10990 -11.97540 -11.93477 -11.75930 -11.40325 -10.87803 -10.60466 -10.49650 -10.21923 -9.64460 -8.97447 -8.82329 -6.27416 -0.18961 0.12256 0.32449 0.62424 1.52214 1.63419 1.80659 2.17541 2.33243 2.70424 2.87589 3.02307 3.13762 3.17198 3.42522 3.60177 3.81225 3.97631 4.02562 4.19679 4.32099 4.44660 4.59280 4.71370 4.82386 4.88156 5.02183 5.09092 5.23294 5.36667 5.47239 5.64744 5.93238 6.17051 6.34607 6.37061 6.78945 7.02295 7.39743 7.51454 8.47506 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042764 B = 0.003700 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.595226 B = 7566.296823 C = 8026.932685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.237 3.763 3 N -0.584 5.584 4 C 0.551 3.449 5 N -0.803 5.803 6 N -0.582 5.582 7 C 0.211 3.789 8 C -0.199 4.199 9 C 0.089 3.911 10 C -0.094 4.094 11 C -0.192 4.192 12 C 0.080 3.920 13 O -0.232 6.232 14 C -0.489 4.489 15 H 0.098 0.902 16 C -0.038 4.038 17 N -0.911 5.911 18 Si 1.143 2.857 19 H -0.277 1.277 20 H -0.259 1.259 21 H -0.259 1.259 22 C 0.030 3.970 23 N -0.433 5.433 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.423 0.577 28 H 0.424 0.576 29 H 0.190 0.810 30 H 0.159 0.841 31 H 0.141 0.859 32 H 0.264 0.736 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 16.194 -3.237 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.088 3.912 3 N -0.308 5.308 4 C 0.192 3.808 5 N -0.354 5.354 6 N -0.305 5.305 7 C 0.043 3.957 8 C -0.208 4.208 9 C -0.048 4.048 10 C -0.114 4.114 11 C -0.218 4.218 12 C 0.027 3.973 13 O -0.137 6.137 14 C -0.565 4.565 15 H 0.115 0.885 16 C -0.236 4.236 17 N -0.545 5.545 18 Si 0.958 3.042 19 H -0.202 1.202 20 H -0.183 1.183 21 H -0.183 1.183 22 C -0.131 4.131 23 N -0.142 5.142 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.255 0.745 28 H 0.257 0.743 29 H 0.207 0.793 30 H 0.177 0.823 31 H 0.158 0.842 32 H 0.073 0.927 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.532 16.096 -2.923 19.456 hybrid contribution -0.088 0.346 0.107 0.372 sum 10.444 16.442 -2.816 19.681 Atomic orbital electron populations 1.20673 0.86902 1.03200 1.04039 1.21721 0.97711 0.86324 0.85406 1.67749 1.07860 1.30614 1.24589 1.19751 0.85437 0.87928 0.87714 1.41666 1.10300 1.02780 1.80616 1.67953 1.40399 0.98095 1.24078 1.23350 0.90512 0.95639 0.86241 1.19600 0.95052 0.92484 1.13628 1.19056 0.96038 0.93406 0.96337 1.22003 0.99729 0.91319 0.98344 1.21677 0.98452 0.99746 1.01911 1.20836 0.92551 0.88135 0.95782 1.83649 1.50151 1.18954 1.60951 1.22646 1.21911 0.90529 1.21403 0.88468 1.28350 0.94694 1.00334 1.00192 1.70712 1.25154 1.36209 1.22405 0.82603 0.76413 0.71378 0.73770 1.20157 1.18322 1.18317 1.21895 1.02643 0.88095 1.00505 1.67596 1.05966 1.20501 1.20164 0.89049 0.89391 0.91293 0.74478 0.74349 0.79279 0.82308 0.84187 0.92721 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.35 8.97 71.23 0.64 -1.71 16 2 C 0.24 6.76 6.85 42.89 0.29 7.05 16 3 N -0.58 -15.84 10.38 -185.24 -1.92 -17.76 16 4 C 0.55 13.53 8.66 261.48 2.26 15.79 16 5 N -0.80 -12.42 9.06 -59.75 -0.54 -12.96 16 6 N -0.58 -14.82 10.44 -197.15 -2.06 -16.88 16 7 C 0.21 5.35 10.75 85.04 0.91 6.26 16 8 C -0.20 -5.77 5.63 -19.86 -0.11 -5.88 16 9 C 0.09 2.95 5.57 41.97 0.23 3.18 16 10 C -0.09 -3.01 9.53 22.56 0.21 -2.80 16 11 C -0.19 -7.54 9.25 22.55 0.21 -7.33 16 12 C 0.08 3.66 6.67 22.73 0.15 3.82 16 13 O -0.23 -12.71 9.16 -22.18 -0.20 -12.91 16 14 C -0.49 -26.51 9.49 67.92 0.64 -25.86 16 15 H 0.10 4.80 5.25 -2.91 -0.02 4.78 16 16 C -0.04 -2.05 5.49 84.83 0.47 -1.59 16 17 N -0.91 -54.29 13.70 21.61 0.30 -53.99 16 18 Si 1.14 45.06 29.92 68.60 2.05 47.11 16 19 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 20 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 22 C 0.03 1.20 11.14 84.88 0.95 2.14 16 23 N -0.43 -15.85 8.83 -184.34 -1.63 -17.48 16 24 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 26 H 0.07 1.94 7.09 -2.39 -0.02 1.92 16 27 H 0.42 4.90 8.94 -92.71 -0.83 4.07 16 28 H 0.42 4.74 8.94 -92.71 -0.83 3.91 16 29 H 0.19 3.80 8.04 -2.91 -0.02 3.77 16 30 H 0.16 3.86 8.01 -2.91 -0.02 3.84 16 31 H 0.14 5.44 5.75 -2.91 -0.02 5.43 16 32 H 0.26 16.33 7.97 -92.71 -0.74 15.59 16 33 H 0.16 6.02 8.06 -2.91 -0.02 5.99 16 Total: -1.00 -67.92 295.14 2.43 -65.49 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.43 Total: 26.29 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 6.87 Total: -6.91 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -5.85 Total: -119.07 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.20 Total: -12.91 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.05 Total: 47.11 kcal Total: -67.92 2.43 -65.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241645764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.693 kcal (2) G-P(sol) polarization free energy of solvation -67.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds