Wall clock time and date at job start Mon Mar 30 2020 01:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37971 * 119.55861 * 2 1 4 4 C 1.39781 * 119.01809 * 179.97438 * 3 2 1 5 5 C 1.48342 * 120.90427 * 179.97438 * 4 3 2 6 6 C 1.39040 * 120.42140 * 129.72643 * 5 4 3 7 7 C 1.40954 * 118.12261 * 179.76342 * 6 5 4 8 8 C 1.41383 * 120.57022 * 180.26026 * 7 6 5 9 9 H 1.07999 * 120.00314 * 155.92501 * 8 7 6 10 10 C 1.39903 * 120.00158 * 335.92796 * 8 7 6 11 11 N 1.30866 * 119.99981 * 343.10592 * 10 8 7 12 12 Si 1.86799 * 120.00341 * 163.11093 * 10 8 7 13 13 H 1.48507 * 109.46985 * 59.99613 * 12 10 8 14 14 H 1.48497 * 109.47475 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47156 * 299.99853 * 12 10 8 16 16 C 1.40796 * 118.85641 * 0.46384 * 7 6 5 17 17 N 1.31495 * 120.70279 * 359.79359 * 16 7 6 18 18 C 1.32166 * 122.08087 * 359.97438 * 17 16 7 19 19 F 1.35102 * 119.46172 * 179.97438 * 18 17 16 20 20 C 1.39780 * 118.18660 * 0.02562 * 4 3 2 21 21 C 1.37962 * 119.02369 * 359.97438 * 20 4 3 22 22 C 1.50703 * 119.55956 * 180.02562 * 21 20 4 23 23 N 1.31925 * 119.56072 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47199 * 90.00201 * 1 2 3 25 25 H 1.09003 * 109.47571 * 210.00320 * 1 2 3 26 26 H 1.09002 * 109.47335 * 330.00262 * 1 2 3 27 27 H 1.07994 * 120.49002 * 0.27081 * 3 2 1 28 28 H 1.08004 * 120.93811 * 359.97183 * 6 5 4 29 29 H 0.96995 * 119.99949 * 179.97438 * 11 10 8 30 30 H 1.07997 * 119.64900 * 179.77902 * 16 7 6 31 31 H 1.08001 * 120.48769 * 179.97438 * 20 4 3 32 32 H 1.08996 * 109.46851 * 90.00229 * 22 21 20 33 33 H 1.09000 * 109.46861 * 210.00318 * 22 21 20 34 34 H 1.09004 * 109.47336 * 330.00178 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1876 1.2001 0.0000 4 6 3.5853 1.1870 0.0005 5 6 4.3592 2.4525 0.0000 6 6 5.3799 2.6540 0.9224 7 6 6.0872 3.8724 0.8751 8 6 7.1384 4.1293 1.7849 9 1 7.9117 4.8389 1.5302 10 6 7.1769 3.4644 3.0153 11 7 6.1040 2.8702 3.4718 12 14 8.7597 3.4249 4.0065 13 1 9.1724 4.8130 4.3357 14 1 8.5386 2.6637 5.2622 15 1 9.8264 2.7672 3.2098 16 6 5.7259 4.8307 -0.0910 17 7 4.7487 4.5944 -0.9385 18 6 4.0673 3.4620 -0.9261 19 9 3.0728 3.2751 -1.8213 20 6 4.2339 -0.0513 0.0005 21 6 3.4759 -1.2040 0.0005 22 6 4.1626 -2.5454 0.0011 23 7 2.1578 -1.1475 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6484 2.1359 0.0044 28 1 5.6261 1.8970 1.6523 29 1 6.1309 2.4089 4.3246 30 1 6.2569 5.7701 -0.1364 31 1 5.3126 -0.1048 0.0005 32 1 4.3278 -2.8686 1.0288 33 1 3.5362 -3.2745 -0.5129 34 1 5.1207 -2.4634 -0.5124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241994387.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:21 Heat of formation + Delta-G solvation = -1.949602 kcal Electronic energy + Delta-G solvation = -19927.500164 eV Core-core repulsion = 16738.678596 eV Total energy + Delta-G solvation = -3188.821569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.66570 -39.95744 -38.31167 -34.30069 -33.55080 -33.44716 -30.55568 -29.20724 -28.84785 -26.49177 -25.59113 -23.28540 -22.04053 -21.35989 -20.25720 -17.53989 -16.74072 -16.36524 -15.74159 -15.69147 -15.18634 -14.76913 -14.54329 -14.40765 -13.65229 -13.15804 -13.09656 -12.81980 -12.50261 -12.40390 -12.23375 -12.02207 -11.93644 -11.87732 -11.72801 -11.45079 -11.36290 -11.19539 -10.78704 -10.32834 -9.60433 -9.51624 -9.17196 -8.53807 -8.41452 -8.26678 -7.69608 -7.10943 -4.72465 1.42358 1.49580 2.34592 2.60862 2.89927 2.91251 2.97583 3.67592 4.08267 4.28095 4.46635 4.89711 5.01111 5.09044 5.27401 5.41989 5.50128 5.68381 5.71523 5.72466 5.77326 5.79517 5.91701 5.99516 6.19815 6.26973 6.39232 6.46272 6.52357 6.78908 6.82458 6.89656 7.09572 7.33423 7.50763 7.65057 8.10162 8.35034 8.36251 8.38471 9.11075 9.80673 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.006189 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.346025 B = 4522.821687 C = 5575.917250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.125 3.875 3 C -0.161 4.161 4 C 0.038 3.962 5 C -0.109 4.109 6 C -0.092 4.092 7 C 0.054 3.946 8 C -0.438 4.438 9 H 0.089 0.911 10 C 0.072 3.928 11 N -0.783 5.783 12 Si 0.917 3.083 13 H -0.261 1.261 14 H -0.276 1.276 15 H -0.260 1.260 16 C 0.013 3.987 17 N -0.487 5.487 18 C 0.166 3.834 19 F -0.144 7.144 20 C -0.166 4.166 21 C 0.124 3.876 22 C -0.098 4.098 23 N -0.497 5.497 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.140 0.860 29 H 0.289 0.711 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -6.557 -0.776 7.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.013 4.013 3 C -0.181 4.181 4 C 0.030 3.970 5 C -0.113 4.113 6 C -0.117 4.117 7 C 0.049 3.951 8 C -0.467 4.467 9 H 0.108 0.892 10 C -0.148 4.148 11 N -0.407 5.407 12 Si 0.741 3.259 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.148 4.148 17 N -0.199 5.199 18 C 0.012 3.988 19 F -0.124 7.124 20 C -0.186 4.186 21 C -0.013 4.013 22 C -0.156 4.156 23 N -0.209 5.209 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.149 0.851 28 H 0.158 0.842 29 H 0.100 0.900 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.198 -6.858 -1.206 7.663 hybrid contribution 1.180 0.284 1.028 1.591 sum -2.018 -6.574 -0.179 6.879 Atomic orbital electron populations 1.20648 0.89149 1.03038 1.02729 1.21035 0.96600 0.88070 0.95547 1.21990 0.93968 0.99159 1.02952 1.19119 0.92738 0.92796 0.92383 1.19081 1.00091 0.92851 0.99288 1.21741 0.94660 0.97970 0.97352 1.18485 0.92851 0.90860 0.92868 1.19561 1.07460 1.20791 0.98872 0.89246 1.26047 0.97786 0.92929 0.98038 1.69761 1.28071 1.24147 1.18671 0.86189 0.81298 0.79840 0.78584 1.18575 1.20044 1.18449 1.22339 0.96630 0.99202 0.96641 1.66295 1.07815 1.20199 1.25592 1.17467 0.93816 0.93308 0.94213 1.91409 1.58822 1.95019 1.67151 1.21989 1.01191 0.91826 1.03563 1.21039 0.89335 0.95366 0.95594 1.20649 0.99588 0.92557 1.02774 1.67210 1.09519 1.29392 1.14744 0.90733 0.90838 0.90889 0.85080 0.84208 0.90005 0.84219 0.84929 0.90710 0.90858 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.17 36.00 0.37 -0.89 16 2 C 0.12 2.13 6.78 -82.65 -0.56 1.57 16 3 C -0.16 -3.05 8.62 -39.10 -0.34 -3.38 16 4 C 0.04 0.79 5.34 -104.59 -0.56 0.23 16 5 C -0.11 -2.53 5.53 -104.75 -0.58 -3.11 16 6 C -0.09 -2.21 8.33 -38.26 -0.32 -2.52 16 7 C 0.05 1.32 5.59 -106.71 -0.60 0.72 16 8 C -0.44 -10.27 9.08 -37.76 -0.34 -10.61 16 9 H 0.09 1.96 7.90 -52.49 -0.41 1.54 16 10 C 0.07 1.61 5.19 -17.34 -0.09 1.52 16 11 N -0.78 -18.25 10.91 55.55 0.61 -17.65 16 12 Si 0.92 16.65 29.59 -169.99 -5.03 11.62 16 13 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 14 H -0.28 -4.93 7.11 56.52 0.40 -4.53 16 15 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 16 C 0.01 0.32 10.96 -16.73 -0.18 0.13 16 17 N -0.49 -12.01 10.33 -12.59 -0.13 -12.14 16 18 C 0.17 4.01 8.32 -16.72 -0.14 3.87 16 19 F -0.14 -3.34 15.99 2.25 0.04 -3.31 16 20 C -0.17 -3.06 9.29 -39.11 -0.36 -3.43 16 21 C 0.12 2.09 6.78 -82.65 -0.56 1.53 16 22 C -0.10 -1.23 10.17 36.01 0.37 -0.87 16 23 N -0.50 -8.73 10.17 -5.83 -0.06 -8.79 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 27 H 0.13 2.41 7.88 -52.49 -0.41 2.00 16 28 H 0.14 3.39 6.20 -52.48 -0.33 3.07 16 29 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 30 H 0.14 2.95 8.06 -52.49 -0.42 2.53 16 31 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 LS Contribution 303.55 15.07 4.57 4.57 Total: -1.00 -27.12 303.55 -7.56 -34.68 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -3.66 Total: 6.25 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -3.90 Total: -15.24 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.42 Total: -38.58 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.03 Total: 11.62 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.12 -7.56 -34.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241994387.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.735 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds