Wall clock time and date at job start Mon Mar 30 2020 01:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37971 * 119.55861 * 2 1 4 4 C 1.39781 * 119.01809 * 179.97438 * 3 2 1 5 5 C 1.48342 * 120.90427 * 179.97438 * 4 3 2 6 6 C 1.39040 * 120.42140 * 129.72643 * 5 4 3 7 7 C 1.40954 * 118.12261 * 179.76342 * 6 5 4 8 8 C 1.41383 * 120.57022 * 180.26026 * 7 6 5 9 9 H 1.07999 * 120.00314 * 155.92501 * 8 7 6 10 10 C 1.39903 * 120.00158 * 335.92796 * 8 7 6 11 11 N 1.30866 * 119.99981 * 343.10592 * 10 8 7 12 12 Si 1.86799 * 120.00341 * 163.11093 * 10 8 7 13 13 H 1.48507 * 109.46985 * 59.99613 * 12 10 8 14 14 H 1.48497 * 109.47475 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47156 * 299.99853 * 12 10 8 16 16 C 1.40796 * 118.85641 * 0.46384 * 7 6 5 17 17 N 1.31495 * 120.70279 * 359.79359 * 16 7 6 18 18 C 1.32166 * 122.08087 * 359.97438 * 17 16 7 19 19 F 1.35102 * 119.46172 * 179.97438 * 18 17 16 20 20 C 1.39780 * 118.18660 * 0.02562 * 4 3 2 21 21 C 1.37962 * 119.02369 * 359.97438 * 20 4 3 22 22 C 1.50703 * 119.55956 * 180.02562 * 21 20 4 23 23 N 1.31925 * 119.56072 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47199 * 90.00201 * 1 2 3 25 25 H 1.09003 * 109.47571 * 210.00320 * 1 2 3 26 26 H 1.09002 * 109.47335 * 330.00262 * 1 2 3 27 27 H 1.07994 * 120.49002 * 0.27081 * 3 2 1 28 28 H 1.08004 * 120.93811 * 359.97183 * 6 5 4 29 29 H 0.96995 * 119.99949 * 179.97438 * 11 10 8 30 30 H 1.07997 * 119.64900 * 179.77902 * 16 7 6 31 31 H 1.08001 * 120.48769 * 179.97438 * 20 4 3 32 32 H 1.08996 * 109.46851 * 90.00229 * 22 21 20 33 33 H 1.09000 * 109.46861 * 210.00318 * 22 21 20 34 34 H 1.09004 * 109.47336 * 330.00178 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1876 1.2001 0.0000 4 6 3.5853 1.1870 0.0005 5 6 4.3592 2.4525 0.0000 6 6 5.3799 2.6540 0.9224 7 6 6.0872 3.8724 0.8751 8 6 7.1384 4.1293 1.7849 9 1 7.9117 4.8389 1.5302 10 6 7.1769 3.4644 3.0153 11 7 6.1040 2.8702 3.4718 12 14 8.7597 3.4249 4.0065 13 1 9.1724 4.8130 4.3357 14 1 8.5386 2.6637 5.2622 15 1 9.8264 2.7672 3.2098 16 6 5.7259 4.8307 -0.0910 17 7 4.7487 4.5944 -0.9385 18 6 4.0673 3.4620 -0.9261 19 9 3.0728 3.2751 -1.8213 20 6 4.2339 -0.0513 0.0005 21 6 3.4759 -1.2040 0.0005 22 6 4.1626 -2.5454 0.0011 23 7 2.1578 -1.1475 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6484 2.1359 0.0044 28 1 5.6261 1.8970 1.6523 29 1 6.1309 2.4089 4.3246 30 1 6.2569 5.7701 -0.1364 31 1 5.3126 -0.1048 0.0005 32 1 4.3278 -2.8686 1.0288 33 1 3.5362 -3.2745 -0.5129 34 1 5.1207 -2.4634 -0.5124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241994387.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:20 Heat of formation + Delta-G solvation = -15.718323 kcal Electronic energy + Delta-G solvation = -19928.097221 eV Core-core repulsion = 16738.678596 eV Total energy + Delta-G solvation = -3189.418625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.50085 -41.37047 -40.08210 -36.07555 -35.12083 -34.68344 -32.36376 -30.88008 -29.94447 -27.81017 -27.34395 -24.94176 -23.77122 -22.72244 -21.85973 -19.28006 -18.57985 -17.99955 -17.27738 -17.25141 -16.79245 -16.48093 -16.05405 -15.67056 -15.20813 -14.71284 -14.30640 -14.11894 -14.07542 -14.03511 -13.83852 -13.69620 -13.25232 -13.13993 -12.94811 -12.92669 -12.80025 -12.62242 -12.33947 -11.94778 -11.26804 -11.10701 -10.62825 -10.33011 -10.05075 -9.74542 -9.48749 -8.83458 -6.55586 -0.15697 0.12304 0.61358 0.82346 1.41078 1.50003 1.54735 2.14998 2.50403 2.73151 3.17174 3.26125 3.39599 3.49549 3.79957 4.05234 4.10505 4.21088 4.47158 4.54564 4.57460 4.58720 4.71960 4.75179 4.80642 4.85145 4.96989 5.07898 5.07976 5.21213 5.22878 5.31578 5.51596 5.65230 5.76555 5.84212 6.29143 6.54144 6.59027 6.98518 7.25232 8.10641 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.006189 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.346025 B = 4522.821687 C = 5575.917250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.126 3.874 3 C -0.177 4.177 4 C 0.010 3.990 5 C -0.101 4.101 6 C -0.110 4.110 7 C 0.035 3.965 8 C -0.454 4.454 9 H 0.102 0.898 10 C 0.036 3.964 11 N -0.808 5.808 12 Si 0.991 3.009 13 H -0.255 1.255 14 H -0.270 1.270 15 H -0.256 1.256 16 C 0.001 3.999 17 N -0.500 5.500 18 C 0.137 3.863 19 F -0.144 7.144 20 C -0.178 4.178 21 C 0.126 3.874 22 C -0.096 4.096 23 N -0.504 5.504 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.297 0.703 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -7.853 0.139 8.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.011 4.011 3 C -0.197 4.197 4 C 0.001 3.999 5 C -0.104 4.104 6 C -0.135 4.135 7 C 0.030 3.970 8 C -0.482 4.482 9 H 0.120 0.880 10 C -0.182 4.182 11 N -0.432 5.432 12 Si 0.811 3.189 13 H -0.179 1.179 14 H -0.194 1.194 15 H -0.180 1.180 16 C -0.161 4.161 17 N -0.212 5.212 18 C -0.016 4.016 19 F -0.123 7.123 20 C -0.198 4.198 21 C -0.011 4.011 22 C -0.153 4.153 23 N -0.215 5.215 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.108 0.892 30 H 0.177 0.823 31 H 0.156 0.844 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.691 -8.156 -0.310 8.594 hybrid contribution 0.987 0.656 0.784 1.421 sum -1.704 -7.500 0.475 7.706 Atomic orbital electron populations 1.20764 0.86065 1.04339 1.04139 1.21646 0.98613 0.87200 0.93619 1.22071 0.93460 1.00038 1.04150 1.19224 0.93575 0.92562 0.94489 1.19243 0.99495 0.93612 0.98083 1.21702 0.95819 0.98030 0.97964 1.18814 0.93437 0.91229 0.93492 1.19944 1.07457 1.21465 0.99338 0.88032 1.26946 1.00861 0.91785 0.98611 1.69814 1.30057 1.23973 1.19339 0.85078 0.76742 0.80109 0.76973 1.17851 1.19393 1.17962 1.22655 0.96834 1.00000 0.96627 1.66275 1.08211 1.20678 1.26014 1.17657 0.94682 0.93972 0.95254 1.91388 1.58777 1.95055 1.67129 1.22127 1.01681 0.91741 1.04229 1.21695 0.89281 0.96624 0.93526 1.20770 1.00146 0.90241 1.04112 1.67400 1.09824 1.29328 1.14997 0.89103 0.89540 0.89588 0.85389 0.84901 0.89162 0.82263 0.84430 0.89240 0.89608 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.27 10.17 71.23 0.72 -1.55 16 2 C 0.13 4.19 6.78 42.48 0.29 4.48 16 3 C -0.18 -6.80 8.62 22.58 0.19 -6.60 16 4 C 0.01 0.42 5.34 -19.84 -0.11 0.31 16 5 C -0.10 -4.81 5.53 -19.95 -0.11 -4.92 16 6 C -0.11 -5.43 8.33 23.13 0.19 -5.24 16 7 C 0.04 1.75 5.59 -21.21 -0.12 1.63 16 8 C -0.45 -21.23 9.08 23.45 0.21 -21.02 16 9 H 0.10 4.37 7.90 -2.91 -0.02 4.34 16 10 C 0.04 1.59 5.19 85.24 0.44 2.03 16 11 N -0.81 -37.58 10.91 21.82 0.24 -37.34 16 12 Si 0.99 32.82 29.59 68.60 2.03 34.85 16 13 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 14 H -0.27 -8.60 7.11 99.48 0.71 -7.90 16 15 H -0.26 -8.26 7.11 99.48 0.71 -7.55 16 16 C 0.00 0.04 10.96 85.37 0.94 0.98 16 17 N -0.50 -25.29 10.33 -193.73 -2.00 -27.29 16 18 C 0.14 6.86 8.32 85.09 0.71 7.57 16 19 F -0.14 -6.86 15.99 44.97 0.72 -6.14 16 20 C -0.18 -6.59 9.29 22.58 0.21 -6.38 16 21 C 0.13 4.09 6.78 42.48 0.29 4.38 16 22 C -0.10 -2.17 10.17 71.24 0.72 -1.44 16 23 N -0.50 -16.95 10.17 -172.36 -1.75 -18.70 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 27 H 0.13 4.85 7.88 -2.91 -0.02 4.82 16 28 H 0.13 6.66 6.20 -2.91 -0.02 6.64 16 29 H 0.30 12.48 8.30 -92.71 -0.77 11.71 16 30 H 0.16 6.79 8.06 -2.91 -0.02 6.77 16 31 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.74 8.08 -2.38 -0.02 1.72 16 Total: -1.00 -58.46 303.55 4.94 -53.52 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 1.12 Total: 26.89 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 4.58 Total: -25.78 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -3.52 Total: -83.34 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.72 Total: -6.14 kcal Atomic # 14 Polarization: 32.82 SS G_CDS: 2.03 Total: 34.85 kcal Total: -58.46 4.94 -53.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241994387.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.801 kcal (2) G-P(sol) polarization free energy of solvation -58.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds