Wall clock time and date at job start Mon Mar 30 2020 01:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38742 * 119.99547 * 2 1 4 4 C 1.39341 * 119.54036 * 359.72751 * 3 2 1 5 5 C 1.36934 * 119.38971 * 179.97438 * 4 3 2 6 6 C 1.40284 * 118.48849 * 359.97438 * 5 4 3 7 7 C 1.47775 * 120.47562 * 179.97438 * 6 5 4 8 8 C 1.39131 * 120.33081 * 309.72692 * 7 6 5 9 9 C 1.38326 * 119.95455 * 179.71901 * 8 7 6 10 10 F 1.35100 * 119.68955 * 180.28113 * 9 8 7 11 11 C 1.39238 * 120.62129 * 0.55867 * 9 8 7 12 12 C 1.36333 * 120.66767 * 359.72035 * 11 9 8 13 13 C 1.40792 * 120.01591 * 0.02562 * 12 11 9 14 14 C 1.40796 * 120.30303 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00236 * 153.21983 * 14 13 12 16 16 C 1.40007 * 120.00006 * 333.21640 * 14 13 12 17 17 N 1.30831 * 120.00143 * 344.24094 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 164.24190 * 16 14 13 19 19 H 1.48503 * 109.46849 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47107 * 119.99817 * 18 16 14 21 21 H 1.48493 * 109.47214 * 239.99778 * 18 16 14 22 22 C 1.39560 * 119.04543 * 0.02562 * 6 5 4 23 23 N 1.31755 * 120.51146 * 359.72303 * 22 6 5 24 24 H 1.08995 * 109.47088 * 300.27507 * 1 2 3 25 25 H 1.09001 * 109.46946 * 60.27472 * 1 2 3 26 26 H 1.09007 * 109.46806 * 180.27187 * 1 2 3 27 27 H 0.96996 * 119.99691 * 179.73126 * 2 1 3 28 28 H 1.08005 * 120.30566 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.75291 * 179.97438 * 5 4 3 30 30 H 1.08007 * 120.01999 * 0.02562 * 8 7 6 31 31 H 1.07997 * 119.67002 * 179.69463 * 11 9 8 32 32 H 1.08003 * 119.99226 * 179.97438 * 12 11 9 33 33 H 0.96994 * 120.00006 * 180.02562 * 17 16 14 34 34 H 1.08002 * 119.74727 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1587 1.2016 0.0000 4 6 1.4522 2.4026 -0.0058 5 6 2.1399 3.5868 -0.0052 6 6 3.5422 3.5462 0.0017 7 6 4.3282 4.7976 0.0020 8 6 4.0564 5.7982 -0.9257 9 6 4.7932 6.9688 -0.9147 10 9 4.5210 7.9393 -1.8144 11 6 5.8165 7.1541 0.0112 12 6 6.1081 6.1881 0.9280 13 6 5.3721 4.9880 0.9449 14 6 5.6685 3.9861 1.8886 15 1 4.8992 3.2969 2.2043 16 6 6.9606 3.8831 2.4179 17 7 7.9583 4.4932 1.8314 18 14 7.2600 2.8747 3.9616 19 1 5.9770 2.2895 4.4271 20 1 8.2211 1.7833 3.6612 21 1 7.8199 3.7491 5.0232 22 6 4.1841 2.3070 0.0073 23 7 3.4840 1.1909 0.0115 24 1 -0.3633 0.5181 0.8875 25 1 -0.3633 0.5096 -0.8925 26 1 -0.3633 -1.0277 0.0049 27 1 1.9500 -0.8400 0.0039 28 1 0.3722 2.3996 -0.0106 29 1 1.6147 4.5304 -0.0100 30 1 3.2675 5.6629 -1.6508 31 1 6.3852 8.0722 0.0029 32 1 6.9044 6.3432 1.6409 33 1 8.8535 4.4215 2.1979 34 1 5.2632 2.2626 0.0122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242069156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:05 Heat of formation + Delta-G solvation = 5.445895 kcal Electronic energy + Delta-G solvation = -19854.129260 eV Core-core repulsion = 16665.628384 eV Total energy + Delta-G solvation = -3188.500876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.50442 -39.67019 -37.52867 -35.34008 -33.75178 -32.19143 -30.79089 -29.47591 -28.16048 -25.99906 -24.95477 -22.92187 -22.13955 -21.01528 -20.03043 -17.56677 -17.28763 -16.39301 -16.18171 -15.42864 -14.65351 -14.39793 -14.35873 -14.26456 -14.04555 -14.01280 -13.48247 -12.88974 -12.80860 -12.31732 -12.12878 -12.07716 -11.98540 -11.44933 -11.34840 -11.14724 -10.92530 -10.47097 -10.10616 -9.65419 -9.58747 -9.31371 -9.16510 -8.84164 -7.86658 -7.42652 -7.04504 -6.82664 -4.47705 1.85295 2.00071 2.58395 2.85629 3.01876 3.05677 3.08423 3.50380 3.83092 4.40287 4.58621 5.07576 5.25571 5.40133 5.43270 5.48710 5.64116 5.67662 5.82748 5.84708 5.99147 6.04765 6.30981 6.51405 6.62966 6.82325 6.91235 6.96449 7.06332 7.24399 7.34004 7.44267 7.61798 7.76175 7.84702 7.92293 8.06279 8.40822 8.66837 8.72637 8.78653 9.98971 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.007626 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.860305 B = 3670.949552 C = 5650.031171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.740 5.740 3 C 0.372 3.628 4 C -0.239 4.239 5 C -0.047 4.047 6 C -0.089 4.089 7 C -0.152 4.152 8 C -0.098 4.098 9 C -0.046 4.046 10 F -0.174 7.174 11 C -0.125 4.125 12 C -0.135 4.135 13 C 0.121 3.879 14 C -0.444 4.444 15 H 0.085 0.915 16 C 0.076 3.924 17 N -0.785 5.785 18 Si 0.907 3.093 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.271 1.271 22 C 0.165 3.835 23 N -0.546 5.546 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.400 0.600 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.284 0.716 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.223 -5.260 -0.371 9.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.375 5.375 3 C 0.138 3.862 4 C -0.264 4.264 5 C -0.072 4.072 6 C -0.093 4.093 7 C -0.154 4.154 8 C -0.118 4.118 9 C -0.066 4.066 10 F -0.154 7.154 11 C -0.145 4.145 12 C -0.154 4.154 13 C 0.118 3.882 14 C -0.473 4.473 15 H 0.103 0.897 16 C -0.143 4.143 17 N -0.409 5.409 18 Si 0.731 3.269 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.196 1.196 22 C 0.008 3.992 23 N -0.262 5.262 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.234 0.766 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.753 -5.960 -0.377 9.786 hybrid contribution -0.064 0.280 0.517 0.592 sum -7.817 -5.680 0.141 9.664 Atomic orbital electron populations 1.21455 0.79856 1.01969 1.01000 1.43996 1.05143 1.05345 1.82994 1.18355 0.88662 0.85983 0.93210 1.20899 0.99926 0.92012 1.13537 1.21201 0.93686 0.97380 0.94961 1.19394 0.92367 0.94306 1.03257 1.18169 1.03766 0.93378 1.00115 1.20520 0.99257 0.92703 0.99274 1.17174 1.04221 0.88777 0.96395 1.91286 1.94090 1.62707 1.67286 1.20489 0.97276 0.99774 0.96926 1.20927 1.02217 0.92426 0.99864 1.17593 0.88957 0.91897 0.89712 1.19588 0.95574 1.12931 1.19172 0.89717 1.25961 0.95741 0.95154 0.97442 1.69793 1.00967 1.34551 1.35569 0.86252 0.79671 0.79815 0.81172 1.18219 1.19685 1.19566 1.22808 0.99859 0.85684 0.90838 1.67164 1.05644 1.32578 1.20827 0.93109 0.93137 0.91021 0.76552 0.86254 0.85770 0.88048 0.88185 0.85501 0.90464 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 9.91 59.85 0.59 1.56 16 2 N -0.74 -9.86 5.88 -67.18 -0.39 -10.25 16 3 C 0.37 6.42 7.64 -155.08 -1.18 5.24 16 4 C -0.24 -3.94 9.26 -39.64 -0.37 -4.31 16 5 C -0.05 -0.85 9.63 -39.29 -0.38 -1.23 16 6 C -0.09 -1.87 4.93 -104.74 -0.52 -2.38 16 7 C -0.15 -3.49 5.54 -104.25 -0.58 -4.06 16 8 C -0.10 -2.20 9.51 -39.22 -0.37 -2.57 16 9 C -0.05 -1.06 7.30 -39.18 -0.29 -1.35 16 10 F -0.17 -3.90 17.26 2.25 0.04 -3.86 16 11 C -0.13 -2.89 9.94 -39.90 -0.40 -3.28 16 12 C -0.14 -3.28 8.61 -39.30 -0.34 -3.62 16 13 C 0.12 2.98 5.56 -106.54 -0.59 2.39 16 14 C -0.44 -10.78 7.12 -37.95 -0.27 -11.05 16 15 H 0.08 2.07 6.64 -52.48 -0.35 1.72 16 16 C 0.08 1.78 5.16 -17.32 -0.09 1.69 16 17 N -0.78 -18.71 10.98 55.55 0.61 -18.10 16 18 Si 0.91 17.87 29.59 -169.99 -5.03 12.84 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 C 0.17 3.46 9.19 -17.09 -0.16 3.30 16 23 N -0.55 -10.74 10.39 -12.08 -0.13 -10.87 16 24 H 0.05 0.47 7.91 -51.93 -0.41 0.06 16 25 H 0.05 0.46 7.92 -51.93 -0.41 0.05 16 26 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.40 4.91 8.95 -40.82 -0.37 4.54 16 28 H 0.12 1.61 6.67 -52.48 -0.35 1.26 16 29 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.10 2.06 8.05 -52.48 -0.42 1.64 16 31 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.13 3.13 6.24 -52.48 -0.33 2.80 16 33 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 34 H 0.16 3.54 7.31 -52.49 -0.38 3.16 16 LS Contribution 296.95 15.07 4.47 4.47 Total: -1.00 -26.76 296.95 -8.78 -35.54 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -3.42 Total: 9.90 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -4.93 Total: -19.68 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.09 Total: -39.21 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.76 -8.78 -35.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.986 kcal (2) G-P(sol) polarization free energy of solvation -26.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds