Wall clock time and date at job start Mon Mar 30 2020 01:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38742 * 119.99547 * 2 1 4 4 C 1.39341 * 119.54036 * 359.72751 * 3 2 1 5 5 C 1.36934 * 119.38971 * 179.97438 * 4 3 2 6 6 C 1.40284 * 118.48849 * 359.97438 * 5 4 3 7 7 C 1.47775 * 120.47562 * 179.97438 * 6 5 4 8 8 C 1.39131 * 120.33081 * 309.72692 * 7 6 5 9 9 C 1.38326 * 119.95455 * 179.71901 * 8 7 6 10 10 F 1.35100 * 119.68955 * 180.28113 * 9 8 7 11 11 C 1.39238 * 120.62129 * 0.55867 * 9 8 7 12 12 C 1.36333 * 120.66767 * 359.72035 * 11 9 8 13 13 C 1.40792 * 120.01591 * 0.02562 * 12 11 9 14 14 C 1.40796 * 120.30303 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00236 * 153.21983 * 14 13 12 16 16 C 1.40007 * 120.00006 * 333.21640 * 14 13 12 17 17 N 1.30831 * 120.00143 * 344.24094 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 164.24190 * 16 14 13 19 19 H 1.48503 * 109.46849 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47107 * 119.99817 * 18 16 14 21 21 H 1.48493 * 109.47214 * 239.99778 * 18 16 14 22 22 C 1.39560 * 119.04543 * 0.02562 * 6 5 4 23 23 N 1.31755 * 120.51146 * 359.72303 * 22 6 5 24 24 H 1.08995 * 109.47088 * 300.27507 * 1 2 3 25 25 H 1.09001 * 109.46946 * 60.27472 * 1 2 3 26 26 H 1.09007 * 109.46806 * 180.27187 * 1 2 3 27 27 H 0.96996 * 119.99691 * 179.73126 * 2 1 3 28 28 H 1.08005 * 120.30566 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.75291 * 179.97438 * 5 4 3 30 30 H 1.08007 * 120.01999 * 0.02562 * 8 7 6 31 31 H 1.07997 * 119.67002 * 179.69463 * 11 9 8 32 32 H 1.08003 * 119.99226 * 179.97438 * 12 11 9 33 33 H 0.96994 * 120.00006 * 180.02562 * 17 16 14 34 34 H 1.08002 * 119.74727 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1587 1.2016 0.0000 4 6 1.4522 2.4026 -0.0058 5 6 2.1399 3.5868 -0.0052 6 6 3.5422 3.5462 0.0017 7 6 4.3282 4.7976 0.0020 8 6 4.0564 5.7982 -0.9257 9 6 4.7932 6.9688 -0.9147 10 9 4.5210 7.9393 -1.8144 11 6 5.8165 7.1541 0.0112 12 6 6.1081 6.1881 0.9280 13 6 5.3721 4.9880 0.9449 14 6 5.6685 3.9861 1.8886 15 1 4.8992 3.2969 2.2043 16 6 6.9606 3.8831 2.4179 17 7 7.9583 4.4932 1.8314 18 14 7.2600 2.8747 3.9616 19 1 5.9770 2.2895 4.4271 20 1 8.2211 1.7833 3.6612 21 1 7.8199 3.7491 5.0232 22 6 4.1841 2.3070 0.0073 23 7 3.4840 1.1909 0.0115 24 1 -0.3633 0.5181 0.8875 25 1 -0.3633 0.5096 -0.8925 26 1 -0.3633 -1.0277 0.0049 27 1 1.9500 -0.8400 0.0039 28 1 0.3722 2.3996 -0.0106 29 1 1.6147 4.5304 -0.0100 30 1 3.2675 5.6629 -1.6508 31 1 6.3852 8.0722 0.0029 32 1 6.9044 6.3432 1.6409 33 1 8.8535 4.4215 2.1979 34 1 5.2632 2.2626 0.0122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242069156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:04 Heat of formation + Delta-G solvation = -8.033955 kcal Electronic energy + Delta-G solvation = -19854.713790 eV Core-core repulsion = 16665.628384 eV Total energy + Delta-G solvation = -3189.085406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.30090 -41.10749 -39.23043 -36.55143 -35.52823 -33.69145 -32.31595 -31.26582 -29.60248 -27.33743 -26.50876 -24.37862 -23.62873 -22.77602 -21.65524 -19.31551 -18.60677 -18.03120 -17.60693 -17.13195 -16.35753 -16.05456 -15.96904 -15.55913 -15.49521 -15.26508 -14.93911 -14.48610 -14.18988 -13.82865 -13.75935 -13.68745 -13.09994 -13.03246 -12.81681 -12.79015 -12.56543 -12.22668 -11.78607 -11.35726 -11.06834 -10.99438 -10.55979 -10.31659 -9.53622 -9.23587 -8.72874 -8.30596 -6.30682 0.31432 0.55945 0.81714 1.14250 1.39206 1.45262 1.51960 2.18813 2.40840 2.62552 3.10418 3.60632 3.82333 3.94136 4.16456 4.28361 4.29402 4.37068 4.39865 4.54980 4.73084 4.75888 4.95194 4.97918 5.06595 5.12893 5.26072 5.27998 5.40829 5.56422 5.75976 5.84826 5.93135 6.05788 6.26452 6.26828 6.58000 6.71508 6.85747 6.92678 7.38051 8.26247 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.007626 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.860305 B = 3670.949552 C = 5650.031171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.732 5.732 3 C 0.371 3.629 4 C -0.231 4.231 5 C -0.043 4.043 6 C -0.119 4.119 7 C -0.148 4.148 8 C -0.102 4.102 9 C -0.056 4.056 10 F -0.170 7.170 11 C -0.129 4.129 12 C -0.154 4.154 13 C 0.096 3.904 14 C -0.460 4.460 15 H 0.076 0.924 16 C 0.043 3.957 17 N -0.812 5.812 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.266 1.266 21 H -0.261 1.261 22 C 0.155 3.845 23 N -0.567 5.567 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.405 0.595 28 H 0.157 0.843 29 H 0.141 0.859 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.292 0.708 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 -6.500 -0.193 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.365 5.365 3 C 0.134 3.866 4 C -0.255 4.255 5 C -0.068 4.068 6 C -0.124 4.124 7 C -0.151 4.151 8 C -0.121 4.121 9 C -0.076 4.076 10 F -0.150 7.150 11 C -0.149 4.149 12 C -0.173 4.173 13 C 0.093 3.907 14 C -0.488 4.488 15 H 0.094 0.906 16 C -0.174 4.174 17 N -0.437 5.437 18 Si 0.792 3.208 19 H -0.189 1.189 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.001 4.001 23 N -0.285 5.285 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.240 0.760 28 H 0.175 0.825 29 H 0.159 0.841 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.959 -7.215 -0.211 12.300 hybrid contribution 0.450 0.547 0.383 0.805 sum -9.509 -6.668 0.172 11.615 Atomic orbital electron populations 1.21783 0.77107 1.04449 1.01650 1.44275 1.06821 1.04223 1.81203 1.18773 0.88132 0.87890 0.91767 1.21226 1.01672 0.90850 1.11737 1.21401 0.92513 0.98992 0.93931 1.19332 0.93628 0.93219 1.06201 1.18434 1.03130 0.94266 0.99226 1.20735 0.99638 0.92277 0.99412 1.17316 1.04448 0.89240 0.96584 1.91288 1.94058 1.62549 1.67074 1.20646 0.97458 1.00162 0.96585 1.20881 1.02735 0.93076 1.00632 1.17916 0.89986 0.92232 0.90534 1.19609 0.96025 1.13143 1.20066 0.90624 1.26624 0.95146 0.95990 0.99629 1.69823 1.01536 1.35593 1.36728 0.85316 0.79120 0.78521 0.77882 1.18874 1.19124 1.18532 1.22451 0.99116 0.86453 0.92102 1.67137 1.07146 1.31991 1.22199 0.92475 0.92207 0.87892 0.75996 0.82517 0.84079 0.86007 0.86507 0.86537 0.89685 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 9.91 127.77 1.27 2.62 16 2 N -0.73 -17.19 5.88 -366.47 -2.15 -19.35 16 3 C 0.37 12.00 7.64 133.16 1.02 13.02 16 4 C -0.23 -6.90 9.26 22.23 0.21 -6.70 16 5 C -0.04 -1.49 9.63 22.46 0.22 -1.27 16 6 C -0.12 -5.01 4.93 -19.94 -0.10 -5.11 16 7 C -0.15 -6.92 5.54 -19.62 -0.11 -7.03 16 8 C -0.10 -4.52 9.51 22.51 0.21 -4.31 16 9 C -0.06 -2.58 7.30 22.53 0.16 -2.42 16 10 F -0.17 -7.48 17.26 44.97 0.78 -6.70 16 11 C -0.13 -6.04 9.94 22.07 0.22 -5.82 16 12 C -0.15 -7.71 8.61 22.45 0.19 -7.52 16 13 C 0.10 4.88 5.56 -21.11 -0.12 4.76 16 14 C -0.46 -23.10 7.12 23.32 0.17 -22.94 16 15 H 0.08 3.84 6.64 -2.91 -0.02 3.82 16 16 C 0.04 2.04 5.16 85.27 0.44 2.48 16 17 N -0.81 -39.75 10.98 21.84 0.24 -39.51 16 18 Si 0.97 37.11 29.59 68.60 2.03 39.14 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 C 0.16 6.66 9.19 85.02 0.78 7.44 16 23 N -0.57 -22.13 10.39 -192.14 -2.00 -24.13 16 24 H 0.06 0.80 7.91 -2.39 -0.02 0.78 16 25 H 0.06 0.80 7.92 -2.39 -0.02 0.78 16 26 H 0.10 0.88 8.14 -2.38 -0.02 0.87 16 27 H 0.41 8.84 8.95 -92.71 -0.83 8.01 16 28 H 0.16 3.47 6.67 -2.91 -0.02 3.46 16 29 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.12 4.81 8.05 -2.91 -0.02 4.79 16 31 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.12 5.99 6.24 -2.91 -0.02 5.97 16 33 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 34 H 0.14 6.45 7.31 -2.91 -0.02 6.43 16 Total: -1.00 -58.42 296.95 3.77 -54.64 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.32 Total: 28.68 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.56 Total: -32.78 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -3.91 Total: -82.98 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.78 Total: -6.70 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Total: -58.42 3.77 -54.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.609 kcal (2) G-P(sol) polarization free energy of solvation -58.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds