Wall clock time and date at job start Mon Mar 30 2020 01:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38749 * 120.00103 * 2 1 4 4 C 1.39355 * 119.53735 * 0.02562 * 3 2 1 5 5 C 1.36925 * 119.38273 * 179.97438 * 4 3 2 6 6 C 1.40262 * 118.49978 * 359.97438 * 5 4 3 7 7 C 1.47840 * 120.48291 * 180.02562 * 6 5 4 8 8 C 1.40007 * 119.89552 * 309.71072 * 7 6 5 9 9 C 1.36195 * 120.13164 * 179.71847 * 8 7 6 10 10 C 1.40994 * 119.93440 * 0.54680 * 9 8 7 11 11 C 1.40989 * 120.10056 * 179.74494 * 10 9 8 12 12 H 1.08000 * 119.99917 * 24.71024 * 11 10 9 13 13 C 1.39957 * 120.00055 * 204.71239 * 11 10 9 14 14 N 1.30836 * 119.99928 * 17.97901 * 13 11 10 15 15 Si 1.86803 * 120.00101 * 197.98411 * 13 11 10 16 16 H 1.48500 * 109.46960 * 89.99726 * 15 13 11 17 17 H 1.48496 * 109.47086 * 209.99689 * 15 13 11 18 18 H 1.48499 * 109.47023 * 329.99845 * 15 13 11 19 19 C 1.40893 * 119.80089 * 359.72620 * 10 9 8 20 20 C 1.36431 * 119.86024 * 359.97438 * 19 10 9 21 21 F 1.35105 * 119.96355 * 179.97438 * 20 19 10 22 22 C 1.39551 * 119.04390 * 0.02562 * 6 5 4 23 23 N 1.31755 * 120.51741 * 359.97438 * 22 6 5 24 24 H 1.08996 * 109.47231 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47096 * 300.00760 * 1 2 3 26 26 H 1.09001 * 109.46648 * 60.00474 * 1 2 3 27 27 H 0.97002 * 120.00077 * 179.97438 * 2 1 3 28 28 H 1.08004 * 120.30446 * 359.96247 * 4 3 2 29 29 H 1.08003 * 120.75146 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.93081 * 359.97438 * 8 7 6 31 31 H 1.08006 * 120.03123 * 180.25446 * 9 8 7 32 32 H 0.96999 * 119.99916 * 179.97438 * 14 13 11 33 33 H 1.08001 * 120.06696 * 180.02562 * 19 10 9 34 34 H 1.08005 * 119.74673 * 180.27094 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1588 1.2016 0.0000 4 6 1.4523 2.4028 0.0005 5 6 2.1402 3.5867 0.0011 6 6 3.5422 3.5462 0.0016 7 6 4.3287 4.7981 0.0028 8 6 4.0436 5.8021 -0.9304 9 6 4.7613 6.9596 -0.9300 10 6 5.8010 7.1424 0.0046 11 6 6.5498 8.3371 0.0047 12 1 6.1200 9.2437 -0.3950 13 6 7.8499 8.3481 0.5227 14 7 8.5014 7.2243 0.6788 15 14 8.6550 9.9673 0.9913 16 1 8.3528 10.2775 2.4117 17 1 10.1249 9.8600 0.8099 18 1 8.1271 11.0516 0.1247 19 6 6.0893 6.1278 0.9388 20 6 5.3611 4.9741 0.9349 21 9 5.6361 3.9996 1.8294 22 6 4.1842 2.3071 0.0010 23 7 3.4841 1.1909 0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.9501 -0.8401 0.0004 28 1 0.3723 2.3998 0.0003 29 1 1.6150 4.5305 0.0019 30 1 3.2503 5.6601 -1.6493 31 1 4.5373 7.7348 -1.6479 32 1 9.4026 7.2319 1.0375 33 1 6.8845 6.2635 1.6568 34 1 5.2633 2.2626 0.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242069234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:19 Heat of formation + Delta-G solvation = 5.064343 kcal Electronic energy + Delta-G solvation = -19513.877099 eV Core-core repulsion = 16325.359678 eV Total energy + Delta-G solvation = -3188.517421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.66468 -39.76334 -37.48336 -35.60614 -33.93245 -32.19492 -30.71902 -29.18177 -28.63681 -26.49080 -24.73380 -23.12287 -22.03089 -21.02097 -20.22563 -17.74672 -17.45735 -16.49707 -15.89980 -15.50834 -14.89694 -14.70294 -14.51635 -14.39853 -14.15332 -13.94479 -13.27022 -12.97828 -12.85521 -12.56319 -12.27365 -12.21986 -11.99535 -11.68086 -11.25853 -11.07168 -10.80318 -10.43396 -10.17963 -9.89536 -9.68512 -9.38752 -9.28361 -9.01069 -7.81956 -7.53099 -7.05181 -6.91413 -4.55673 1.68210 1.83180 2.61606 2.85503 2.97915 3.01189 3.07463 3.36571 3.77964 4.28878 4.49144 4.95715 5.09506 5.32026 5.33360 5.41713 5.53732 5.59376 5.63483 5.65999 5.83280 6.13961 6.25832 6.45075 6.63022 6.71524 6.84148 6.88579 7.03085 7.10492 7.30161 7.47463 7.58173 7.73168 7.76768 7.83198 8.08440 8.39912 8.57198 8.64155 8.71653 9.94514 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048757 B = 0.003911 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.135823 B = 7158.328515 C = 7529.709971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.739 5.739 3 C 0.372 3.628 4 C -0.234 4.234 5 C -0.042 4.042 6 C -0.093 4.093 7 C -0.224 4.224 8 C -0.045 4.045 9 C -0.234 4.234 10 C 0.134 3.866 11 C -0.446 4.446 12 H 0.086 0.914 13 C 0.073 3.927 14 N -0.775 5.775 15 Si 0.914 3.086 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.208 4.208 20 C 0.130 3.870 21 F -0.163 7.163 22 C 0.144 3.856 23 N -0.542 5.542 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.401 0.599 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.286 0.714 33 H 0.129 0.871 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 -6.469 -0.676 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.374 5.374 3 C 0.138 3.862 4 C -0.258 4.258 5 C -0.068 4.068 6 C -0.097 4.097 7 C -0.227 4.227 8 C -0.064 4.064 9 C -0.253 4.253 10 C 0.130 3.870 11 C -0.474 4.474 12 H 0.104 0.896 13 C -0.147 4.147 14 N -0.398 5.398 15 Si 0.737 3.263 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.183 1.183 19 C -0.228 4.228 20 C 0.111 3.889 21 F -0.142 7.142 22 C -0.013 4.013 23 N -0.258 5.258 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.235 0.765 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.147 0.853 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.208 -7.358 -0.579 11.801 hybrid contribution 0.266 0.958 0.353 1.055 sum -8.942 -6.401 -0.225 10.999 Atomic orbital electron populations 1.21479 0.79664 1.02144 1.01085 1.44010 1.05249 1.05276 1.82852 1.18336 0.88483 0.86125 0.93300 1.20975 1.00149 0.91967 1.12709 1.21201 0.93477 0.97549 0.94530 1.19491 0.92971 0.94012 1.03268 1.17774 1.03598 0.96278 1.05065 1.20164 0.97541 0.92765 0.95895 1.20704 1.03395 0.98338 1.02887 1.17429 0.89837 0.91840 0.87859 1.19667 0.97523 0.96448 1.33747 0.89622 1.26059 0.97533 0.98348 0.92806 1.69822 1.11561 1.28298 1.30151 0.86211 0.78261 0.81656 0.80130 1.18993 1.20066 1.18341 1.20937 1.03799 0.94268 1.03802 1.17384 0.96260 0.86459 0.88843 1.91346 1.93340 1.62480 1.67008 1.22642 0.99280 0.86143 0.93256 1.67077 1.05848 1.32364 1.20522 0.90874 0.93021 0.93029 0.76483 0.85938 0.85365 0.88444 0.88214 0.90256 0.85329 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.86 9.91 59.85 0.59 1.45 16 2 N -0.74 -9.10 5.88 -67.18 -0.39 -9.50 16 3 C 0.37 6.04 7.64 -155.07 -1.19 4.85 16 4 C -0.23 -3.60 9.26 -39.64 -0.37 -3.96 16 5 C -0.04 -0.72 9.62 -39.30 -0.38 -1.10 16 6 C -0.09 -1.86 5.32 -104.72 -0.56 -2.42 16 7 C -0.22 -4.99 5.52 -104.57 -0.58 -5.57 16 8 C -0.05 -0.97 9.46 -39.65 -0.38 -1.34 16 9 C -0.23 -5.37 9.73 -39.27 -0.38 -5.75 16 10 C 0.13 3.38 5.57 -106.81 -0.60 2.78 16 11 C -0.45 -11.08 9.03 -37.90 -0.34 -11.42 16 12 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 13 C 0.07 1.73 5.13 -17.33 -0.09 1.65 16 14 N -0.78 -19.15 10.96 55.55 0.61 -18.55 16 15 Si 0.91 17.56 29.60 -169.99 -5.03 12.53 16 16 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 17 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 18 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 19 C -0.21 -5.33 8.60 -39.23 -0.34 -5.67 16 20 C 0.13 3.14 7.11 -39.49 -0.28 2.86 16 21 F -0.16 -3.86 15.87 2.25 0.04 -3.82 16 22 C 0.14 2.84 10.04 -17.10 -0.17 2.66 16 23 N -0.54 -10.06 10.39 -12.08 -0.13 -10.19 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.43 7.91 -51.93 -0.41 0.02 16 26 H 0.05 0.42 7.91 -51.93 -0.41 0.01 16 27 H 0.40 4.51 8.95 -40.82 -0.37 4.14 16 28 H 0.12 1.51 6.67 -52.48 -0.35 1.16 16 29 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 30 H 0.10 1.82 8.05 -52.49 -0.42 1.40 16 31 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 32 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 33 H 0.13 3.43 6.16 -52.49 -0.32 3.10 16 34 H 0.15 2.99 7.77 -52.48 -0.41 2.58 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -27.67 299.82 -8.94 -36.61 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.51 Total: 9.36 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -5.04 Total: -20.97 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.09 Total: -38.23 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.67 -8.94 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.674 kcal (2) G-P(sol) polarization free energy of solvation -27.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds