Wall clock time and date at job start Mon Mar 30 2020 01:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38749 * 120.00103 * 2 1 4 4 C 1.39355 * 119.53735 * 0.02562 * 3 2 1 5 5 C 1.36925 * 119.38273 * 179.97438 * 4 3 2 6 6 C 1.40262 * 118.49978 * 359.97438 * 5 4 3 7 7 C 1.47840 * 120.48291 * 180.02562 * 6 5 4 8 8 C 1.40007 * 119.89552 * 309.71072 * 7 6 5 9 9 C 1.36195 * 120.13164 * 179.71847 * 8 7 6 10 10 C 1.40994 * 119.93440 * 0.54680 * 9 8 7 11 11 C 1.40989 * 120.10056 * 179.74494 * 10 9 8 12 12 H 1.08000 * 119.99917 * 24.71024 * 11 10 9 13 13 C 1.39957 * 120.00055 * 204.71239 * 11 10 9 14 14 N 1.30836 * 119.99928 * 17.97901 * 13 11 10 15 15 Si 1.86803 * 120.00101 * 197.98411 * 13 11 10 16 16 H 1.48500 * 109.46960 * 89.99726 * 15 13 11 17 17 H 1.48496 * 109.47086 * 209.99689 * 15 13 11 18 18 H 1.48499 * 109.47023 * 329.99845 * 15 13 11 19 19 C 1.40893 * 119.80089 * 359.72620 * 10 9 8 20 20 C 1.36431 * 119.86024 * 359.97438 * 19 10 9 21 21 F 1.35105 * 119.96355 * 179.97438 * 20 19 10 22 22 C 1.39551 * 119.04390 * 0.02562 * 6 5 4 23 23 N 1.31755 * 120.51741 * 359.97438 * 22 6 5 24 24 H 1.08996 * 109.47231 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47096 * 300.00760 * 1 2 3 26 26 H 1.09001 * 109.46648 * 60.00474 * 1 2 3 27 27 H 0.97002 * 120.00077 * 179.97438 * 2 1 3 28 28 H 1.08004 * 120.30446 * 359.96247 * 4 3 2 29 29 H 1.08003 * 120.75146 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.93081 * 359.97438 * 8 7 6 31 31 H 1.08006 * 120.03123 * 180.25446 * 9 8 7 32 32 H 0.96999 * 119.99916 * 179.97438 * 14 13 11 33 33 H 1.08001 * 120.06696 * 180.02562 * 19 10 9 34 34 H 1.08005 * 119.74673 * 180.27094 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1588 1.2016 0.0000 4 6 1.4523 2.4028 0.0005 5 6 2.1402 3.5867 0.0011 6 6 3.5422 3.5462 0.0016 7 6 4.3287 4.7981 0.0028 8 6 4.0436 5.8021 -0.9304 9 6 4.7613 6.9596 -0.9300 10 6 5.8010 7.1424 0.0046 11 6 6.5498 8.3371 0.0047 12 1 6.1200 9.2437 -0.3950 13 6 7.8499 8.3481 0.5227 14 7 8.5014 7.2243 0.6788 15 14 8.6550 9.9673 0.9913 16 1 8.3528 10.2775 2.4117 17 1 10.1249 9.8600 0.8099 18 1 8.1271 11.0516 0.1247 19 6 6.0893 6.1278 0.9388 20 6 5.3611 4.9741 0.9349 21 9 5.6361 3.9996 1.8294 22 6 4.1842 2.3071 0.0010 23 7 3.4841 1.1909 0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.9501 -0.8401 0.0004 28 1 0.3723 2.3998 0.0003 29 1 1.6150 4.5305 0.0019 30 1 3.2503 5.6601 -1.6493 31 1 4.5373 7.7348 -1.6479 32 1 9.4026 7.2319 1.0375 33 1 6.8845 6.2635 1.6568 34 1 5.2633 2.2626 0.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242069234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:19 Heat of formation + Delta-G solvation = -9.523609 kcal Electronic energy + Delta-G solvation = -19514.509680 eV Core-core repulsion = 16325.359678 eV Total energy + Delta-G solvation = -3189.150002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.55465 -41.10123 -39.23234 -36.78863 -35.61477 -33.63295 -32.21493 -31.00884 -30.14276 -27.73587 -26.16421 -24.50412 -23.52069 -22.78226 -21.84745 -19.53544 -18.64681 -17.91135 -17.57959 -17.07737 -16.62642 -16.42964 -16.14050 -15.55059 -15.40285 -15.25617 -14.88907 -14.51378 -14.12726 -13.98209 -13.83536 -13.74065 -13.37071 -12.92832 -12.84895 -12.68927 -12.46422 -12.04059 -11.90456 -11.52145 -11.26769 -10.91538 -10.66020 -10.40349 -9.47614 -9.33880 -8.74689 -8.38696 -6.41404 0.22948 0.47325 0.93912 1.01410 1.39483 1.52107 1.53829 2.17461 2.34646 2.59602 3.03457 3.57577 3.73066 3.82501 4.03367 4.20855 4.28220 4.33642 4.44336 4.60472 4.71490 4.79925 4.89955 4.96095 5.03054 5.07212 5.14712 5.23216 5.42341 5.59950 5.67824 5.82174 5.94908 5.99662 6.18820 6.25317 6.55488 6.64609 6.80492 6.87627 7.28066 8.21459 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048757 B = 0.003911 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.135823 B = 7158.328515 C = 7529.709971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.731 5.731 3 C 0.372 3.628 4 C -0.225 4.225 5 C -0.036 4.036 6 C -0.126 4.126 7 C -0.211 4.211 8 C -0.042 4.042 9 C -0.239 4.239 10 C 0.106 3.894 11 C -0.479 4.479 12 H 0.092 0.908 13 C 0.032 3.968 14 N -0.814 5.814 15 Si 0.988 3.012 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.250 1.250 19 C -0.232 4.232 20 C 0.111 3.889 21 F -0.166 7.166 22 C 0.133 3.867 23 N -0.564 5.564 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.406 0.594 28 H 0.161 0.839 29 H 0.148 0.852 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.292 0.708 33 H 0.107 0.893 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 -6.897 -1.291 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.364 5.364 3 C 0.135 3.865 4 C -0.250 4.250 5 C -0.061 4.061 6 C -0.131 4.131 7 C -0.213 4.213 8 C -0.061 4.061 9 C -0.258 4.258 10 C 0.103 3.897 11 C -0.506 4.506 12 H 0.110 0.890 13 C -0.185 4.185 14 N -0.438 5.438 15 Si 0.808 3.192 16 H -0.188 1.188 17 H -0.194 1.194 18 H -0.174 1.174 19 C -0.253 4.253 20 C 0.092 3.908 21 F -0.145 7.145 22 C -0.023 4.023 23 N -0.282 5.282 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.241 0.759 28 H 0.179 0.821 29 H 0.166 0.834 30 H 0.150 0.850 31 H 0.135 0.865 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.952 -7.826 -1.201 14.337 hybrid contribution 0.882 0.803 0.519 1.301 sum -11.071 -7.023 -0.682 13.128 Atomic orbital electron populations 1.21810 0.76943 1.04576 1.01789 1.44307 1.06920 1.04209 1.80949 1.18790 0.88003 0.88036 0.91682 1.21314 1.01935 0.90764 1.10943 1.21415 0.92171 0.99262 0.93275 1.19405 0.94274 0.92734 1.06706 1.18067 1.02384 0.97344 1.03553 1.20500 0.97884 0.91781 0.95906 1.20965 1.02822 0.99451 1.02561 1.17761 0.91133 0.92225 0.88581 1.19953 0.98477 0.96677 1.35533 0.88971 1.26954 0.97701 1.01825 0.91998 1.69891 1.12196 1.30564 1.31135 0.85107 0.77316 0.77119 0.79678 1.18792 1.19363 1.17373 1.20863 1.04350 0.95596 1.04447 1.17635 0.97275 0.86184 0.89693 1.91321 1.93489 1.62488 1.67222 1.22432 0.98921 0.86832 0.94146 1.67077 1.07323 1.31773 1.22014 0.87864 0.92301 0.92068 0.75934 0.82126 0.83403 0.84998 0.86526 0.89707 0.87491 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 9.91 127.77 1.27 2.40 16 2 N -0.73 -15.47 5.88 -366.46 -2.15 -17.62 16 3 C 0.37 11.07 7.64 133.16 1.02 12.09 16 4 C -0.23 -6.11 9.26 22.23 0.21 -5.90 16 5 C -0.04 -1.13 9.62 22.45 0.22 -0.92 16 6 C -0.13 -4.96 5.32 -19.93 -0.11 -5.07 16 7 C -0.21 -9.42 5.52 -19.83 -0.11 -9.53 16 8 C -0.04 -1.78 9.46 22.22 0.21 -1.57 16 9 C -0.24 -10.98 9.73 22.47 0.22 -10.76 16 10 C 0.11 5.55 5.57 -21.28 -0.12 5.43 16 11 C -0.48 -24.48 9.03 23.36 0.21 -24.27 16 12 H 0.09 4.40 7.91 -2.91 -0.02 4.38 16 13 C 0.03 1.57 5.13 85.26 0.44 2.01 16 14 N -0.81 -42.02 10.96 21.83 0.24 -41.78 16 15 Si 0.99 36.48 29.60 68.60 2.03 38.51 16 16 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 17 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 18 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 19 C -0.23 -12.54 8.60 22.50 0.19 -12.35 16 20 C 0.11 5.61 7.11 22.33 0.16 5.77 16 21 F -0.17 -8.27 15.87 44.97 0.71 -7.55 16 22 C 0.13 5.29 10.04 85.02 0.85 6.15 16 23 N -0.56 -20.49 10.39 -192.12 -2.00 -22.49 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.69 7.91 -2.39 -0.02 0.67 16 26 H 0.06 0.69 7.91 -2.39 -0.02 0.67 16 27 H 0.41 7.94 8.95 -92.71 -0.83 7.11 16 28 H 0.16 3.10 6.67 -2.91 -0.02 3.08 16 29 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.13 4.57 8.05 -2.91 -0.02 4.55 16 31 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 32 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 33 H 0.11 6.12 6.16 -2.91 -0.02 6.10 16 34 H 0.14 5.61 7.77 -2.91 -0.02 5.59 16 Total: -1.00 -62.47 299.82 3.80 -58.67 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.31 Total: 28.78 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 4.65 Total: -36.53 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -3.91 Total: -81.89 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 0.71 Total: -7.55 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Total: -62.47 3.80 -58.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.147 kcal (2) G-P(sol) polarization free energy of solvation -62.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds