Wall clock time and date at job start Mon Mar 30 2020 01:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38948 * 120.00104 * 2 1 4 4 C 1.39226 * 119.57451 * 0.02849 * 3 2 1 5 5 C 1.38068 * 119.22138 * 179.67264 * 4 3 2 6 6 C 1.39962 * 118.39812 * 0.56035 * 5 4 3 7 7 C 1.48373 * 120.45220 * 179.73090 * 6 5 4 8 8 C 1.39597 * 120.01740 * 309.97574 * 7 6 5 9 9 C 1.38472 * 120.41829 * 180.28006 * 8 7 6 10 10 C 1.37661 * 120.45266 * 359.72660 * 9 8 7 11 11 C 1.40758 * 120.02070 * 0.02562 * 10 9 8 12 12 C 1.41314 * 120.20915 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00521 * 204.65972 * 12 11 10 14 14 C 1.39936 * 119.99519 * 24.66088 * 12 11 10 15 15 N 1.30848 * 120.00309 * 17.79153 * 14 12 11 16 16 Si 1.86802 * 119.99555 * 197.79617 * 14 12 11 17 17 H 1.48503 * 109.47392 * 59.99733 * 16 14 12 18 18 H 1.48497 * 109.46854 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47209 * 299.99901 * 16 14 12 20 20 C 1.39078 * 120.01560 * 129.72742 * 7 6 5 21 21 F 1.35095 * 120.22012 * 359.97438 * 20 7 6 22 22 C 1.39152 * 119.09488 * 359.46135 * 6 5 4 23 23 N 1.31828 * 120.68381 * 0.25148 * 22 6 5 24 24 H 1.09006 * 109.46705 * 299.99486 * 1 2 3 25 25 H 1.09000 * 109.47137 * 59.99326 * 1 2 3 26 26 H 1.08996 * 109.47364 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99695 * 180.02562 * 2 1 3 28 28 H 1.08000 * 120.38691 * 359.95133 * 4 3 2 29 29 H 1.08004 * 120.80412 * 180.31326 * 5 4 3 30 30 H 1.07999 * 119.79109 * 0.02562 * 8 7 6 31 31 H 1.07994 * 119.77350 * 179.70309 * 9 8 7 32 32 H 1.07998 * 119.98955 * 179.97438 * 10 9 8 33 33 H 0.96996 * 120.00302 * 179.97438 * 15 14 12 34 34 H 1.07999 * 119.66087 * 180.27009 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1598 1.2033 0.0000 4 6 1.4548 2.4039 0.0006 5 6 2.1525 3.5953 0.0075 6 6 3.5513 3.5475 0.0016 7 6 4.3464 4.8002 0.0026 8 6 4.0613 5.8091 -0.9191 9 6 4.8018 6.9791 -0.9294 10 6 5.8250 7.1651 -0.0275 11 6 6.1254 6.1623 0.9135 12 6 7.1752 6.3488 1.8409 13 1 7.6696 5.4930 2.2763 14 6 7.5743 7.6425 2.1949 15 7 6.7837 8.6584 1.9601 16 14 9.2357 7.9191 3.0028 17 1 10.3122 7.4473 2.0951 18 1 9.4178 9.3671 3.2769 19 1 9.2976 7.1626 4.2792 20 6 5.3729 4.9720 0.9251 21 9 5.6496 4.0012 1.8230 22 6 4.1861 2.3092 0.0005 23 7 3.4841 1.1934 0.0000 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9500 -0.8401 -0.0004 28 1 0.3748 2.4031 0.0003 29 1 1.6315 4.5413 0.0132 30 1 3.2607 5.6746 -1.6314 31 1 4.5754 7.7508 -1.6501 32 1 6.3981 8.0804 -0.0424 33 1 7.0602 9.5551 2.2059 34 1 5.2650 2.2618 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242069338.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:21 Heat of formation + Delta-G solvation = -9.049988 kcal Electronic energy + Delta-G solvation = -19639.732221 eV Core-core repulsion = 16450.602756 eV Total energy + Delta-G solvation = -3189.129464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.18071 -41.15542 -39.10398 -36.81776 -35.63736 -33.67391 -32.14953 -31.47290 -29.40413 -27.31002 -26.83537 -24.50922 -23.76304 -22.52192 -21.92789 -19.23489 -18.69557 -17.90814 -17.75069 -17.07366 -16.74786 -16.13988 -15.93528 -15.57789 -15.45237 -15.29017 -14.92044 -14.61767 -14.07936 -13.96276 -13.74637 -13.59599 -13.21739 -13.08215 -12.87461 -12.74859 -12.55162 -12.16030 -11.75469 -11.47512 -11.16589 -11.04673 -10.67765 -10.46475 -9.47551 -9.26921 -8.71865 -8.38507 -6.41521 0.16279 0.39172 0.84542 1.06370 1.37043 1.47669 1.52094 2.19138 2.29058 2.63300 2.96483 3.51694 3.68185 3.89710 4.02192 4.12491 4.21367 4.30479 4.49564 4.57330 4.70475 4.76292 4.82040 4.94369 4.97042 5.05414 5.19080 5.23781 5.35000 5.58710 5.65717 5.78156 6.02740 6.04273 6.13958 6.18669 6.56195 6.60482 6.78053 6.89079 7.21901 8.26002 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035930 B = 0.004308 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.100426 B = 6498.299504 C = 7006.592324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.729 5.729 3 C 0.380 3.620 4 C -0.229 4.229 5 C -0.025 4.025 6 C -0.155 4.155 7 C -0.044 4.044 8 C -0.196 4.196 9 C -0.106 4.106 10 C -0.165 4.165 11 C 0.058 3.942 12 C -0.498 4.498 13 H 0.068 0.932 14 C 0.041 3.959 15 N -0.815 5.815 16 Si 0.982 3.018 17 H -0.259 1.259 18 H -0.259 1.259 19 H -0.265 1.265 20 C -0.048 4.048 21 F -0.168 7.168 22 C 0.151 3.849 23 N -0.564 5.564 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.407 0.593 28 H 0.164 0.836 29 H 0.150 0.850 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.114 0.886 33 H 0.293 0.707 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.773 -8.561 -4.299 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.362 5.362 3 C 0.143 3.857 4 C -0.253 4.253 5 C -0.051 4.051 6 C -0.160 4.160 7 C -0.046 4.046 8 C -0.215 4.215 9 C -0.124 4.124 10 C -0.185 4.185 11 C 0.055 3.945 12 C -0.527 4.527 13 H 0.086 0.914 14 C -0.175 4.175 15 N -0.441 5.441 16 Si 0.803 3.197 17 H -0.183 1.183 18 H -0.183 1.183 19 H -0.189 1.189 20 C -0.068 4.068 21 F -0.147 7.147 22 C -0.006 4.006 23 N -0.282 5.282 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.242 0.758 28 H 0.182 0.818 29 H 0.168 0.832 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.621 -9.130 -4.227 14.630 hybrid contribution 0.867 0.593 0.737 1.283 sum -9.754 -8.537 -3.490 13.424 Atomic orbital electron populations 1.21837 0.76825 1.04692 1.01878 1.44387 1.06989 1.04171 1.80637 1.18793 0.87992 0.88065 0.90812 1.21561 1.01995 0.90529 1.11232 1.21619 0.91894 0.99419 0.92129 1.19522 0.94657 0.93029 1.08793 1.18390 0.95175 0.94523 0.96472 1.20641 1.04511 0.94010 1.02311 1.21007 0.95714 0.97237 0.98435 1.21228 1.00950 1.00171 0.96153 1.17900 0.92298 0.90796 0.93461 1.19640 1.16100 0.93818 1.23133 0.91395 1.26677 1.01604 0.94547 0.94664 1.69824 1.36130 1.01377 1.36730 0.85250 0.77015 0.78515 0.78959 1.18332 1.18332 1.18931 1.18185 1.02461 0.90412 0.95747 1.91228 1.93806 1.62218 1.67478 1.22339 0.99153 0.86563 0.92565 1.67077 1.07364 1.31565 1.22177 0.92280 0.91906 0.87764 0.75791 0.81815 0.83237 0.85052 0.85315 0.86779 0.89601 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 9.91 127.77 1.27 2.34 16 2 N -0.73 -15.05 5.88 -366.47 -2.16 -17.20 16 3 C 0.38 11.14 7.65 133.10 1.02 12.16 16 4 C -0.23 -6.14 9.31 22.47 0.21 -5.93 16 5 C -0.03 -0.80 9.66 22.65 0.22 -0.58 16 6 C -0.16 -6.12 5.32 -19.94 -0.11 -6.23 16 7 C -0.04 -1.99 5.49 -20.05 -0.11 -2.10 16 8 C -0.20 -8.10 9.53 22.65 0.22 -7.88 16 9 C -0.11 -4.60 10.01 22.19 0.22 -4.37 16 10 C -0.17 -8.47 8.69 22.75 0.20 -8.27 16 11 C 0.06 3.24 5.57 -21.27 -0.12 3.12 16 12 C -0.50 -27.96 8.78 23.44 0.21 -27.75 16 13 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 14 C 0.04 2.10 5.14 85.25 0.44 2.53 16 15 N -0.82 -41.89 10.96 21.83 0.24 -41.65 16 16 Si 0.98 38.66 29.60 68.60 2.03 40.69 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 18 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 C -0.05 -2.52 7.16 23.11 0.17 -2.36 16 21 F -0.17 -9.02 15.34 44.97 0.69 -8.33 16 22 C 0.15 5.95 10.03 84.91 0.85 6.80 16 23 N -0.56 -20.19 10.38 -192.42 -2.00 -22.19 16 24 H 0.06 0.68 7.92 -2.38 -0.02 0.66 16 25 H 0.06 0.67 7.92 -2.39 -0.02 0.65 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.41 7.72 8.95 -92.71 -0.83 6.89 16 28 H 0.16 3.10 6.68 -2.91 -0.02 3.08 16 29 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.13 4.52 8.04 -2.91 -0.02 4.49 16 31 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 33 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 34 H 0.14 5.71 7.78 -2.91 -0.02 5.69 16 Total: -1.00 -65.23 299.46 3.79 -61.43 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.31 Total: 25.78 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 4.67 Total: -38.52 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -3.91 Total: -81.05 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.69 Total: -8.33 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -65.23 3.79 -61.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069338.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.385 kcal (2) G-P(sol) polarization free energy of solvation -65.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds