Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38742 * 120.00145 * 2 1 4 4 C 1.39347 * 119.53918 * 359.97438 * 3 2 1 5 5 C 1.36934 * 119.38314 * 180.02562 * 4 3 2 6 6 C 1.40241 * 118.49559 * 359.97438 * 5 4 3 7 7 C 1.47893 * 120.47191 * 180.02562 * 6 5 4 8 8 C 1.40081 * 119.86933 * 359.72350 * 7 6 5 9 9 C 1.36161 * 120.17973 * 180.28066 * 8 7 6 10 10 C 1.40958 * 119.90284 * 359.97438 * 9 8 7 11 11 C 1.40921 * 120.12928 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00504 * 154.26761 * 11 10 9 13 13 C 1.39962 * 119.99842 * 334.26889 * 11 10 9 14 14 N 1.30849 * 120.00210 * 343.28450 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 163.28301 * 13 11 10 16 16 H 1.48501 * 109.47390 * 59.99906 * 15 13 11 17 17 H 1.48505 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47030 * 299.99955 * 15 13 11 19 19 C 1.41192 * 119.74214 * 359.97438 * 10 9 8 20 20 F 1.35099 * 120.09165 * 180.02562 * 19 10 9 21 21 C 1.36522 * 119.81538 * 0.02562 * 19 10 9 22 22 C 1.39518 * 119.05611 * 0.27708 * 6 5 4 23 23 N 1.31765 * 120.51131 * 359.43070 * 22 6 5 24 24 H 1.08998 * 109.47051 * 299.99510 * 1 2 3 25 25 H 1.08995 * 109.47585 * 60.00625 * 1 2 3 26 26 H 1.09005 * 109.46834 * 180.02562 * 1 2 3 27 27 H 0.96997 * 120.00178 * 179.97438 * 2 1 3 28 28 H 1.08006 * 120.30823 * 0.02562 * 4 3 2 29 29 H 1.07994 * 120.75316 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.90876 * 0.28425 * 8 7 6 31 31 H 1.08000 * 120.04794 * 179.97438 * 9 8 7 32 32 H 0.96995 * 120.00390 * 180.02562 * 14 13 11 33 33 H 1.08005 * 119.95250 * 179.97438 * 21 19 10 34 34 H 1.07995 * 119.74616 * 179.69938 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1587 1.2015 0.0000 4 6 1.4523 2.4027 -0.0005 5 6 2.1402 3.5867 -0.0011 6 6 3.5420 3.5460 -0.0005 7 6 4.3287 4.7984 -0.0005 8 6 3.6711 6.0352 -0.0069 9 6 4.3891 7.1921 -0.0127 10 6 5.7979 7.1449 -0.0116 11 6 6.5457 8.3393 -0.0171 12 1 7.5462 8.3520 0.3895 13 6 5.9919 9.5093 -0.5493 14 7 4.9401 9.4413 -1.3248 15 14 6.7541 11.1679 -0.1527 16 1 8.1622 11.1910 -0.6238 17 1 5.9861 12.2412 -0.8335 18 1 6.7196 11.3902 1.3152 19 6 6.4569 5.8962 -0.0041 20 9 7.8068 5.8427 -0.0025 21 6 5.7261 4.7431 0.0017 22 6 4.1840 2.3073 -0.0053 23 7 3.4839 1.1910 0.0010 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9500 -0.8400 0.0004 28 1 0.3722 2.3998 -0.0005 29 1 1.6152 4.5304 -0.0011 30 1 2.5917 6.0713 -0.0072 31 1 3.8800 8.1446 -0.0180 32 1 4.5565 10.2521 -1.6940 33 1 6.2278 3.7867 0.0070 34 1 5.2630 2.2630 -0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242069970.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = 6.513775 kcal Electronic energy + Delta-G solvation = -19346.440220 eV Core-core repulsion = 16157.985651 eV Total energy + Delta-G solvation = -3188.454569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.29964 -39.84583 -37.54357 -35.58290 -34.02436 -32.21873 -30.82365 -29.28519 -28.65453 -26.49389 -24.67704 -23.32809 -22.23519 -20.77243 -20.18837 -17.73841 -17.42946 -16.57194 -16.13842 -15.35451 -14.75813 -14.56411 -14.52250 -14.28287 -14.07919 -13.98216 -13.50688 -13.09000 -12.84575 -12.51020 -12.21199 -12.16705 -11.91212 -11.59655 -11.23180 -11.15725 -10.98267 -10.69148 -10.00293 -9.88416 -9.80671 -9.42436 -9.32130 -8.94662 -8.02903 -7.57840 -7.06176 -6.83362 -4.50122 1.52100 1.78283 2.69404 2.81947 2.95706 2.98836 3.12243 3.37066 3.76322 4.23733 4.61203 4.93640 5.06381 5.29613 5.33614 5.40853 5.50032 5.55113 5.55942 5.75146 5.92904 5.96370 6.24758 6.28355 6.44222 6.68311 6.83282 6.90612 6.94145 7.09728 7.29736 7.38779 7.49287 7.76188 7.83619 7.88377 7.94806 8.36006 8.52435 8.55530 8.68875 9.89994 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038354 B = 0.003908 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.868424 B = 7163.169194 C = 7812.782462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.740 5.740 3 C 0.361 3.639 4 C -0.223 4.223 5 C -0.057 4.057 6 C -0.084 4.084 7 C -0.165 4.165 8 C -0.086 4.086 9 C -0.151 4.151 10 C 0.092 3.908 11 C -0.438 4.438 12 H 0.086 0.914 13 C 0.074 3.926 14 N -0.777 5.777 15 Si 0.917 3.083 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.260 1.260 19 C -0.028 4.028 20 F -0.163 7.163 21 C -0.100 4.100 22 C 0.119 3.881 23 N -0.537 5.537 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.400 0.600 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.287 0.713 33 H 0.105 0.895 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 -8.270 1.605 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.375 5.375 3 C 0.127 3.873 4 C -0.248 4.248 5 C -0.082 4.082 6 C -0.088 4.088 7 C -0.167 4.167 8 C -0.105 4.105 9 C -0.171 4.171 10 C 0.088 3.912 11 C -0.465 4.465 12 H 0.104 0.896 13 C -0.147 4.147 14 N -0.400 5.400 15 Si 0.740 3.260 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.185 1.185 19 C -0.048 4.048 20 F -0.142 7.142 21 C -0.120 4.120 22 C -0.038 4.038 23 N -0.253 5.253 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.234 0.766 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.794 -8.859 1.448 11.888 hybrid contribution 0.189 1.216 0.010 1.231 sum -7.605 -7.643 1.457 10.880 Atomic orbital electron populations 1.21469 0.79715 1.02105 1.01061 1.43965 1.05192 1.05228 1.83096 1.18276 0.88417 0.86123 0.94464 1.20976 1.00167 0.91952 1.11700 1.21134 0.93552 0.97702 0.95834 1.19598 0.93083 0.94130 1.01985 1.17618 0.91161 0.90752 1.17184 1.20526 0.97788 0.92105 1.00040 1.20821 0.92987 0.97407 1.05866 1.17720 0.92843 0.90856 0.89742 1.19610 1.01718 0.92722 1.32495 0.89563 1.26020 0.94355 1.01827 0.92491 1.69802 1.18288 1.31709 1.20195 0.86203 0.80159 0.79462 0.80138 1.18627 1.20013 1.18462 1.17409 0.76033 0.94370 1.17014 1.91285 1.30296 1.97301 1.95343 1.20285 0.93447 0.95945 1.02275 1.22498 0.99249 0.86201 0.95861 1.67028 1.05951 1.32306 1.19987 0.93073 0.93049 0.90920 0.76557 0.85959 0.85173 0.88485 0.85620 0.90167 0.87708 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 9.91 59.84 0.59 1.44 16 2 N -0.74 -8.87 5.87 -67.19 -0.39 -9.26 16 3 C 0.36 5.68 7.64 -155.08 -1.19 4.50 16 4 C -0.22 -3.38 9.26 -39.64 -0.37 -3.74 16 5 C -0.06 -0.95 9.47 -39.30 -0.37 -1.32 16 6 C -0.08 -1.60 5.90 -104.72 -0.62 -2.21 16 7 C -0.16 -3.55 5.90 -104.65 -0.62 -4.17 16 8 C -0.09 -1.88 9.37 -39.64 -0.37 -2.25 16 9 C -0.15 -3.69 8.62 -39.30 -0.34 -4.02 16 10 C 0.09 2.38 5.57 -106.73 -0.59 1.79 16 11 C -0.44 -11.26 8.75 -37.92 -0.33 -11.59 16 12 H 0.09 2.18 7.74 -52.49 -0.41 1.78 16 13 C 0.07 1.75 5.15 -17.32 -0.09 1.66 16 14 N -0.78 -18.77 10.96 55.55 0.61 -18.16 16 15 Si 0.92 17.69 29.59 -169.99 -5.03 12.66 16 16 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 17 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 C -0.03 -0.70 7.26 -39.08 -0.28 -0.99 16 20 F -0.16 -4.04 16.71 2.25 0.04 -4.01 16 21 C -0.10 -2.25 9.34 -39.60 -0.37 -2.62 16 22 C 0.12 2.17 10.60 -17.10 -0.18 1.98 16 23 N -0.54 -9.45 10.39 -12.09 -0.13 -9.58 16 24 H 0.05 0.41 7.91 -51.93 -0.41 0.00 16 25 H 0.05 0.42 7.91 -51.93 -0.41 0.01 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.40 4.35 8.95 -40.82 -0.37 3.99 16 28 H 0.12 1.50 6.67 -52.48 -0.35 1.15 16 29 H 0.13 2.00 6.28 -52.49 -0.33 1.67 16 30 H 0.10 1.86 6.23 -52.49 -0.33 1.53 16 31 H 0.13 3.09 6.19 -52.49 -0.32 2.77 16 32 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 33 H 0.10 2.08 6.19 -52.48 -0.33 1.75 16 34 H 0.15 2.58 6.19 -52.49 -0.32 2.26 16 LS Contribution 294.25 15.07 4.43 4.43 Total: -1.00 -27.88 294.25 -8.73 -36.61 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -3.13 Total: 8.85 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -5.13 Total: -21.56 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.09 Total: -37.00 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.88 -8.73 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069970.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.122 kcal (2) G-P(sol) polarization free energy of solvation -27.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds