Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38742 * 120.00145 * 2 1 4 4 C 1.39347 * 119.53918 * 359.97438 * 3 2 1 5 5 C 1.36934 * 119.38314 * 180.02562 * 4 3 2 6 6 C 1.40241 * 118.49559 * 359.97438 * 5 4 3 7 7 C 1.47893 * 120.47191 * 180.02562 * 6 5 4 8 8 C 1.40081 * 119.86933 * 359.72350 * 7 6 5 9 9 C 1.36161 * 120.17973 * 180.28066 * 8 7 6 10 10 C 1.40958 * 119.90284 * 359.97438 * 9 8 7 11 11 C 1.40921 * 120.12928 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00504 * 154.26761 * 11 10 9 13 13 C 1.39962 * 119.99842 * 334.26889 * 11 10 9 14 14 N 1.30849 * 120.00210 * 343.28450 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 163.28301 * 13 11 10 16 16 H 1.48501 * 109.47390 * 59.99906 * 15 13 11 17 17 H 1.48505 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47030 * 299.99955 * 15 13 11 19 19 C 1.41192 * 119.74214 * 359.97438 * 10 9 8 20 20 F 1.35099 * 120.09165 * 180.02562 * 19 10 9 21 21 C 1.36522 * 119.81538 * 0.02562 * 19 10 9 22 22 C 1.39518 * 119.05611 * 0.27708 * 6 5 4 23 23 N 1.31765 * 120.51131 * 359.43070 * 22 6 5 24 24 H 1.08998 * 109.47051 * 299.99510 * 1 2 3 25 25 H 1.08995 * 109.47585 * 60.00625 * 1 2 3 26 26 H 1.09005 * 109.46834 * 180.02562 * 1 2 3 27 27 H 0.96997 * 120.00178 * 179.97438 * 2 1 3 28 28 H 1.08006 * 120.30823 * 0.02562 * 4 3 2 29 29 H 1.07994 * 120.75316 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.90876 * 0.28425 * 8 7 6 31 31 H 1.08000 * 120.04794 * 179.97438 * 9 8 7 32 32 H 0.96995 * 120.00390 * 180.02562 * 14 13 11 33 33 H 1.08005 * 119.95250 * 179.97438 * 21 19 10 34 34 H 1.07995 * 119.74616 * 179.69938 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1587 1.2015 0.0000 4 6 1.4523 2.4027 -0.0005 5 6 2.1402 3.5867 -0.0011 6 6 3.5420 3.5460 -0.0005 7 6 4.3287 4.7984 -0.0005 8 6 3.6711 6.0352 -0.0069 9 6 4.3891 7.1921 -0.0127 10 6 5.7979 7.1449 -0.0116 11 6 6.5457 8.3393 -0.0171 12 1 7.5462 8.3520 0.3895 13 6 5.9919 9.5093 -0.5493 14 7 4.9401 9.4413 -1.3248 15 14 6.7541 11.1679 -0.1527 16 1 8.1622 11.1910 -0.6238 17 1 5.9861 12.2412 -0.8335 18 1 6.7196 11.3902 1.3152 19 6 6.4569 5.8962 -0.0041 20 9 7.8068 5.8427 -0.0025 21 6 5.7261 4.7431 0.0017 22 6 4.1840 2.3073 -0.0053 23 7 3.4839 1.1910 0.0010 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9500 -0.8400 0.0004 28 1 0.3722 2.3998 -0.0005 29 1 1.6152 4.5304 -0.0011 30 1 2.5917 6.0713 -0.0072 31 1 3.8800 8.1446 -0.0180 32 1 4.5565 10.2521 -1.6940 33 1 6.2278 3.7867 0.0070 34 1 5.2630 2.2630 -0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242069970.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = -8.403242 kcal Electronic energy + Delta-G solvation = -19347.087070 eV Core-core repulsion = 16157.985651 eV Total energy + Delta-G solvation = -3189.101419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.22191 -41.16417 -39.23997 -36.78386 -35.66264 -33.61626 -32.33983 -31.05965 -30.12189 -27.70623 -26.12298 -24.72040 -23.70894 -22.42100 -21.80402 -19.45212 -18.69154 -18.07057 -17.65150 -17.01356 -16.36510 -16.09836 -16.00250 -15.67957 -15.57393 -15.23520 -14.96360 -14.46093 -14.12812 -14.00827 -13.75667 -13.70960 -13.26116 -12.87535 -12.86566 -12.77643 -12.58728 -12.19136 -11.71921 -11.58027 -11.35027 -10.95405 -10.64853 -10.29983 -9.59069 -9.37574 -8.77821 -8.28735 -6.36199 0.06877 0.48241 0.91456 1.14540 1.37694 1.49293 1.56347 2.17260 2.37565 2.59359 3.11659 3.59622 3.71042 3.91205 4.08781 4.17017 4.27642 4.33575 4.38442 4.53890 4.64142 4.72032 4.88973 4.96646 4.98870 5.09499 5.15473 5.20496 5.46807 5.54085 5.59512 5.81975 6.00316 6.09455 6.13257 6.21646 6.51239 6.68076 6.70387 6.85031 7.30753 8.19175 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.038354 B = 0.003908 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.868424 B = 7163.169194 C = 7812.782462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.731 5.731 3 C 0.366 3.634 4 C -0.223 4.223 5 C -0.050 4.050 6 C -0.121 4.121 7 C -0.146 4.146 8 C -0.089 4.089 9 C -0.163 4.163 10 C 0.060 3.940 11 C -0.484 4.484 12 H 0.073 0.927 13 C 0.039 3.961 14 N -0.806 5.806 15 Si 0.986 3.014 16 H -0.263 1.263 17 H -0.259 1.259 18 H -0.258 1.258 19 C -0.058 4.058 20 F -0.171 7.171 21 C -0.108 4.108 22 C 0.121 3.879 23 N -0.558 5.558 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.406 0.594 28 H 0.157 0.843 29 H 0.145 0.855 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.296 0.704 33 H 0.126 0.874 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 -9.785 1.700 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.364 5.364 3 C 0.130 3.870 4 C -0.247 4.247 5 C -0.075 4.075 6 C -0.126 4.126 7 C -0.148 4.148 8 C -0.107 4.107 9 C -0.183 4.183 10 C 0.057 3.943 11 C -0.512 4.512 12 H 0.091 0.909 13 C -0.178 4.178 14 N -0.431 5.431 15 Si 0.806 3.194 16 H -0.188 1.188 17 H -0.183 1.183 18 H -0.182 1.182 19 C -0.078 4.078 20 F -0.150 7.150 21 C -0.127 4.127 22 C -0.036 4.036 23 N -0.276 5.276 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.241 0.759 28 H 0.175 0.825 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.440 -10.431 1.540 14.838 hybrid contribution 0.739 1.251 -0.019 1.453 sum -9.701 -9.180 1.522 13.442 Atomic orbital electron populations 1.21789 0.77157 1.04502 1.01679 1.44270 1.06817 1.04284 1.81059 1.18743 0.88167 0.87838 0.92299 1.21282 1.01847 0.90903 1.10671 1.21369 0.92662 0.99201 0.94258 1.19495 0.94099 0.93062 1.05914 1.17942 0.91033 0.91934 1.13848 1.20825 0.99300 0.91453 0.99171 1.20837 0.92628 0.98035 1.06796 1.18050 0.93852 0.91463 0.90918 1.19722 1.01855 0.94309 1.35281 0.90878 1.26773 0.94743 1.04683 0.91631 1.69815 1.19407 1.33056 1.20781 0.85181 0.79143 0.75127 0.79928 1.18757 1.18276 1.18214 1.17736 0.76036 0.95235 1.18832 1.91243 1.30827 1.97365 1.95565 1.20547 0.94102 0.96040 1.02014 1.22567 0.99674 0.86308 0.95009 1.67105 1.07092 1.31849 1.21555 0.92294 0.92348 0.87907 0.75889 0.82540 0.83700 0.85475 0.86433 0.89274 0.85638 0.82790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 9.91 127.77 1.27 2.36 16 2 N -0.73 -14.61 5.87 -366.50 -2.15 -16.76 16 3 C 0.37 10.28 7.64 133.16 1.02 11.30 16 4 C -0.22 -5.85 9.26 22.23 0.21 -5.65 16 5 C -0.05 -1.52 9.47 22.45 0.21 -1.31 16 6 C -0.12 -4.42 5.90 -19.92 -0.12 -4.54 16 7 C -0.15 -6.22 5.90 -19.88 -0.12 -6.33 16 8 C -0.09 -3.89 9.37 22.23 0.21 -3.68 16 9 C -0.16 -8.21 8.62 22.45 0.19 -8.02 16 10 C 0.06 3.29 5.57 -21.23 -0.12 3.17 16 11 C -0.48 -26.29 8.75 23.35 0.20 -26.09 16 12 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 13 C 0.04 1.92 5.15 85.26 0.44 2.36 16 14 N -0.81 -40.06 10.96 21.83 0.24 -39.82 16 15 Si 0.99 37.07 29.59 68.60 2.03 39.10 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 18 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 19 C -0.06 -3.04 7.26 22.59 0.16 -2.88 16 20 F -0.17 -8.92 16.71 44.97 0.75 -8.17 16 21 C -0.11 -4.93 9.34 22.26 0.21 -4.72 16 22 C 0.12 4.24 10.60 85.01 0.90 5.14 16 23 N -0.56 -18.47 10.39 -192.17 -2.00 -20.46 16 24 H 0.06 0.66 7.91 -2.39 -0.02 0.64 16 25 H 0.06 0.66 7.91 -2.39 -0.02 0.64 16 26 H 0.10 0.64 8.14 -2.38 -0.02 0.63 16 27 H 0.41 7.37 8.95 -92.71 -0.83 6.54 16 28 H 0.16 3.01 6.67 -2.91 -0.02 2.99 16 29 H 0.15 3.95 6.28 -2.91 -0.02 3.93 16 30 H 0.13 4.65 6.23 -2.91 -0.02 4.63 16 31 H 0.12 6.00 6.19 -2.91 -0.02 5.98 16 32 H 0.30 13.09 8.30 -92.71 -0.77 12.32 16 33 H 0.13 5.03 6.19 -2.91 -0.02 5.01 16 34 H 0.16 5.15 6.19 -2.91 -0.02 5.13 16 Total: -1.00 -62.62 294.25 3.87 -58.75 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.33 Total: 26.26 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 4.67 Total: -38.90 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -3.91 Total: -77.05 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 0.75 Total: -8.17 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -62.62 3.87 -58.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242069970.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.350 kcal (2) G-P(sol) polarization free energy of solvation -62.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds