Wall clock time and date at job start Mon Mar 30 2020 01:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38935 * 119.99926 * 2 1 4 4 C 1.39234 * 119.57350 * 0.02562 * 3 2 1 5 5 C 1.38059 * 119.21882 * 180.02562 * 4 3 2 6 6 C 1.39965 * 118.40344 * 359.97438 * 5 4 3 7 7 C 1.48375 * 120.45382 * 180.02562 * 6 5 4 8 8 C 1.39830 * 119.96556 * 359.73018 * 7 6 5 9 9 C 1.38234 * 120.42201 * 180.27476 * 8 7 6 10 10 C 1.38075 * 120.34361 * 359.97438 * 9 8 7 11 11 F 1.35099 * 120.03907 * 180.02562 * 10 9 8 12 12 C 1.41032 * 119.92097 * 0.02562 * 10 9 8 13 13 C 1.41325 * 120.20598 * 179.97438 * 12 10 9 14 14 H 1.07990 * 119.99974 * 334.66324 * 13 12 10 15 15 C 1.39909 * 119.99793 * 154.66206 * 13 12 10 16 16 N 1.30864 * 120.00380 * 342.94284 * 15 13 12 17 17 Si 1.86801 * 119.99944 * 162.93928 * 15 13 12 18 18 H 1.48501 * 109.46822 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47104 * 119.99757 * 17 15 13 20 20 H 1.48493 * 109.47436 * 240.00016 * 17 15 13 21 21 C 1.38679 * 119.96448 * 180.02562 * 7 6 5 22 22 C 1.39159 * 119.09116 * 0.28274 * 6 5 4 23 23 N 1.31824 * 120.68450 * 359.42380 * 22 6 5 24 24 H 1.08996 * 109.47400 * 300.00147 * 1 2 3 25 25 H 1.09001 * 109.46886 * 60.00593 * 1 2 3 26 26 H 1.09003 * 109.46902 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00163 * 179.97438 * 2 1 3 28 28 H 1.08002 * 120.39050 * 359.97438 * 4 3 2 29 29 H 1.08001 * 120.79629 * 180.02562 * 5 4 3 30 30 H 1.08005 * 119.79551 * 0.28015 * 8 7 6 31 31 H 1.08000 * 119.83001 * 179.97438 * 9 8 7 32 32 H 0.96997 * 119.99932 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.17023 * 359.74550 * 21 7 6 34 34 H 1.08004 * 119.65530 * 179.69960 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1597 1.2032 0.0000 4 6 1.4545 2.4038 0.0005 5 6 2.1522 3.5951 0.0000 6 6 3.5510 3.5475 -0.0005 7 6 4.3462 4.8002 -0.0006 8 6 3.6977 6.0390 -0.0057 9 6 4.4292 7.2120 -0.0115 10 6 5.8094 7.1733 -0.0117 11 9 6.5182 8.3234 -0.0169 12 6 6.4783 5.9318 -0.0065 13 6 7.8908 5.8851 -0.0072 14 1 8.4581 6.7103 -0.4115 15 6 8.5542 4.7699 0.5160 16 7 7.9155 3.9346 1.2949 17 14 10.3515 4.4733 0.1024 18 1 10.8391 5.5553 -0.7901 19 1 11.1524 4.4653 1.3530 20 1 10.4921 3.1639 -0.5838 21 6 5.7317 4.7412 -0.0016 22 6 4.1859 2.3092 -0.0065 23 7 3.4839 1.1933 -0.0002 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9500 -0.8400 0.0004 28 1 0.3745 2.4031 0.0005 29 1 1.6311 4.5411 0.0008 30 1 2.6184 6.0799 -0.0051 31 1 3.9185 8.1636 -0.0159 32 1 8.3756 3.1616 1.6579 33 1 6.2342 3.7852 0.0017 34 1 5.2648 2.2618 -0.0119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242070446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:07 Heat of formation + Delta-G solvation = 6.749441 kcal Electronic energy + Delta-G solvation = -19585.742979 eV Core-core repulsion = 16397.298629 eV Total energy + Delta-G solvation = -3188.444350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.25005 -39.86593 -37.46566 -35.51926 -33.89341 -32.23128 -30.76121 -29.83640 -27.84198 -25.87836 -25.37100 -23.24143 -22.24093 -21.02374 -19.95814 -17.61721 -17.45634 -16.39544 -16.03759 -15.48549 -14.90948 -14.58488 -14.55900 -14.10366 -14.04484 -14.01417 -13.27764 -13.11083 -12.80893 -12.50947 -12.25037 -11.99411 -11.74400 -11.60677 -11.29467 -11.09541 -11.05623 -10.54453 -10.09185 -9.87991 -9.59644 -9.37820 -9.28060 -8.94659 -7.98059 -7.64608 -6.93491 -6.64036 -4.47613 1.50929 1.74058 2.67359 2.87105 3.05134 3.10933 3.14136 3.32803 3.87772 4.27212 4.63430 4.93534 5.06589 5.27249 5.31733 5.45661 5.50777 5.52002 5.54417 5.69359 5.89145 5.99829 6.22662 6.33064 6.44666 6.63232 6.79836 6.92187 7.06054 7.16494 7.25743 7.42604 7.51442 7.71164 7.83939 7.88821 8.01916 8.43310 8.55559 8.67297 8.75334 10.06259 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019675 B = 0.005274 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.785102 B = 5308.111763 C = 6643.940789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.739 5.739 3 C 0.378 3.622 4 C -0.238 4.238 5 C -0.038 4.038 6 C -0.117 4.117 7 C -0.038 4.038 8 C -0.208 4.208 9 C -0.121 4.121 10 C -0.027 4.027 11 F -0.163 7.163 12 C 0.086 3.914 13 C -0.452 4.452 14 H 0.084 0.916 15 C 0.077 3.923 16 N -0.789 5.789 17 Si 0.911 3.089 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.270 1.270 21 C -0.130 4.130 22 C 0.153 3.847 23 N -0.542 5.542 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.402 0.598 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.284 0.716 33 H 0.131 0.869 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 -6.477 -1.706 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.373 5.373 3 C 0.144 3.856 4 C -0.262 4.262 5 C -0.064 4.064 6 C -0.122 4.122 7 C -0.040 4.040 8 C -0.228 4.228 9 C -0.140 4.140 10 C -0.048 4.048 11 F -0.142 7.142 12 C 0.083 3.917 13 C -0.481 4.481 14 H 0.102 0.898 15 C -0.142 4.142 16 N -0.414 5.414 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.195 1.195 21 C -0.149 4.149 22 C -0.005 4.005 23 N -0.258 5.258 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.236 0.764 28 H 0.142 0.858 29 H 0.150 0.850 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.958 -7.415 -1.552 12.512 hybrid contribution 0.548 0.531 0.004 0.763 sum -9.410 -6.884 -1.547 11.762 Atomic orbital electron populations 1.21491 0.79608 1.02216 1.01113 1.44085 1.05291 1.05292 1.82634 1.18366 0.88550 0.86132 0.92593 1.21216 1.00162 0.91832 1.13007 1.21419 0.93484 0.97662 0.93807 1.19728 0.93204 0.94609 1.04612 1.18301 0.93075 0.90267 1.02320 1.20169 0.97314 0.91108 1.14196 1.20402 0.92185 0.97687 1.03712 1.17936 0.88778 0.81596 1.16460 1.91271 1.79410 1.48396 1.95160 1.17533 0.93994 0.89364 0.90808 1.19551 0.91151 1.02964 1.34471 0.89792 1.25906 1.01152 0.94714 0.92420 1.69809 1.38867 1.11321 1.21405 0.86194 0.81410 0.79444 0.79414 1.18247 1.19820 1.19452 1.21270 0.90718 0.98687 1.04255 1.22722 0.99931 0.85946 0.91865 1.67104 1.05826 1.32375 1.20514 0.92972 0.92986 0.90823 0.76385 0.85774 0.84969 0.88232 0.87980 0.90505 0.85108 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 9.91 59.85 0.59 1.42 16 2 N -0.74 -8.94 5.88 -67.19 -0.40 -9.33 16 3 C 0.38 6.02 7.64 -155.02 -1.19 4.84 16 4 C -0.24 -3.56 9.31 -39.28 -0.37 -3.93 16 5 C -0.04 -0.64 9.52 -39.00 -0.37 -1.01 16 6 C -0.12 -2.31 5.89 -104.74 -0.62 -2.93 16 7 C -0.04 -0.86 5.87 -104.97 -0.62 -1.47 16 8 C -0.21 -4.41 9.44 -38.99 -0.37 -4.78 16 9 C -0.12 -2.70 9.99 -39.64 -0.40 -3.09 16 10 C -0.03 -0.69 7.31 -38.58 -0.28 -0.97 16 11 F -0.16 -4.11 16.71 2.25 0.04 -4.07 16 12 C 0.09 2.27 5.57 -106.80 -0.59 1.68 16 13 C -0.45 -11.93 8.77 -37.78 -0.33 -12.27 16 14 H 0.08 2.20 7.74 -52.49 -0.41 1.80 16 15 C 0.08 1.87 5.15 -17.34 -0.09 1.78 16 16 N -0.79 -19.56 10.97 55.55 0.61 -18.95 16 17 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 18 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 C -0.13 -3.20 8.06 -38.55 -0.31 -3.51 16 22 C 0.15 2.99 10.59 -17.21 -0.18 2.81 16 23 N -0.54 -9.96 10.38 -12.17 -0.13 -10.09 16 24 H 0.05 0.42 7.92 -51.93 -0.41 0.01 16 25 H 0.05 0.41 7.92 -51.93 -0.41 0.00 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.40 4.46 8.95 -40.82 -0.37 4.09 16 28 H 0.12 1.48 6.68 -52.49 -0.35 1.13 16 29 H 0.13 1.95 6.30 -52.49 -0.33 1.62 16 30 H 0.10 1.80 6.24 -52.48 -0.33 1.47 16 31 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 32 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 33 H 0.13 3.23 4.34 -52.49 -0.23 3.01 16 34 H 0.16 3.23 6.20 -52.48 -0.33 2.91 16 LS Contribution 294.65 15.07 4.44 4.44 Total: -1.00 -28.51 294.65 -8.72 -37.22 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.14 Total: 8.91 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -5.12 Total: -21.44 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.09 Total: -38.38 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.51 -8.72 -37.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242070446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.974 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds