Wall clock time and date at job start Mon Mar 30 2020 01:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38743 * 120.00189 * 2 1 4 4 C 1.39362 * 119.53253 * 0.02562 * 3 2 1 5 5 C 1.36921 * 119.38693 * 180.02562 * 4 3 2 6 6 C 1.40309 * 118.49067 * 0.02562 * 5 4 3 7 7 C 1.47741 * 120.48290 * 179.97438 * 6 5 4 8 8 C 1.39227 * 120.25722 * 309.70043 * 7 6 5 9 9 C 1.37952 * 120.13399 * 179.71897 * 8 7 6 10 10 C 1.39227 * 120.65216 * 0.55285 * 9 8 7 11 11 F 1.35104 * 119.73734 * 179.73814 * 10 9 8 12 12 C 1.37599 * 120.52095 * 359.72857 * 10 9 8 13 13 C 1.40731 * 119.84744 * 359.97438 * 12 10 9 14 14 C 1.40837 * 120.31636 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00042 * 153.45127 * 14 13 12 16 16 C 1.40030 * 120.00394 * 333.44606 * 14 13 12 17 17 N 1.30808 * 119.99444 * 344.32407 * 16 14 13 18 18 Si 1.86796 * 120.00109 * 164.32273 * 16 14 13 19 19 H 1.48503 * 109.47015 * 90.00621 * 18 16 14 20 20 H 1.48498 * 109.47175 * 209.99780 * 18 16 14 21 21 H 1.48497 * 109.47340 * 330.00388 * 18 16 14 22 22 C 1.39593 * 119.03951 * 359.96895 * 6 5 4 23 23 N 1.31751 * 120.50986 * 0.03153 * 22 6 5 24 24 H 1.09000 * 109.47117 * 300.00931 * 1 2 3 25 25 H 1.09001 * 109.46573 * 60.00148 * 1 2 3 26 26 H 1.09001 * 109.47382 * 180.02562 * 1 2 3 27 27 H 0.96997 * 119.99284 * 179.97438 * 2 1 3 28 28 H 1.07991 * 120.30627 * 359.97438 * 4 3 2 29 29 H 1.07996 * 120.75417 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.93436 * 359.97438 * 8 7 6 31 31 H 1.07994 * 119.67498 * 180.27905 * 9 8 7 32 32 H 1.08003 * 120.07228 * 180.02562 * 12 10 9 33 33 H 0.96995 * 119.99630 * 179.97438 * 17 16 14 34 34 H 1.08003 * 119.74366 * 180.30338 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1588 1.2015 0.0000 4 6 1.4522 2.4027 0.0005 5 6 2.1399 3.5867 0.0000 6 6 3.5424 3.5462 -0.0016 7 6 4.3283 4.7972 -0.0028 8 6 4.0500 5.7997 -0.9280 9 6 4.7816 6.9692 -0.9231 10 6 5.8113 7.1584 -0.0053 11 9 6.5195 8.3089 -0.0204 12 6 6.1131 6.1831 0.9173 13 6 5.3764 4.9842 0.9355 14 6 5.6773 3.9792 1.8751 15 1 4.9099 3.2877 2.1906 16 6 6.9713 3.8762 2.4002 17 7 7.9658 4.4911 1.8138 18 14 7.2772 2.8609 3.9380 19 1 7.5901 1.4613 3.5529 20 1 8.4216 3.4348 4.6905 21 1 6.0633 2.8795 4.7931 22 6 4.1844 2.3067 -0.0020 23 7 3.4841 1.1906 -0.0014 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.9499 -0.8401 0.0004 28 1 0.3723 2.3997 0.0005 29 1 1.6147 4.5304 0.0000 30 1 3.2569 5.6632 -1.6483 31 1 4.5564 7.7437 -1.6412 32 1 6.9131 6.3378 1.6262 33 1 8.8621 4.4201 2.1777 34 1 5.2635 2.2622 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242071375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:08 Heat of formation + Delta-G solvation = -9.416095 kcal Electronic energy + Delta-G solvation = -19854.564938 eV Core-core repulsion = 16665.419598 eV Total energy + Delta-G solvation = -3189.145340 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.54286 -41.07651 -39.16521 -36.50350 -35.62280 -33.55828 -32.22601 -31.42005 -29.27385 -27.57753 -26.52172 -24.35605 -23.44709 -22.93797 -21.57607 -19.48777 -18.55293 -17.82197 -17.57492 -16.93761 -16.66369 -16.38170 -16.20483 -15.48584 -15.25343 -15.21949 -14.83435 -14.48075 -14.19604 -13.89023 -13.68087 -13.61465 -13.39783 -12.96650 -12.81640 -12.79967 -12.39445 -12.14771 -11.79416 -11.55620 -11.10186 -10.92191 -10.53245 -10.27059 -9.47586 -9.24950 -8.73975 -8.23740 -6.38705 0.32011 0.58999 0.89921 1.09967 1.36266 1.45006 1.50197 2.16365 2.43075 2.62919 3.12673 3.59610 3.81602 3.87928 4.17946 4.31932 4.38563 4.42808 4.52129 4.58282 4.71242 4.74453 4.96888 4.99657 5.08109 5.09085 5.25405 5.29861 5.47105 5.64228 5.77924 5.79228 5.94124 6.03635 6.28512 6.29561 6.57308 6.73149 6.84638 6.89424 7.40968 8.24495 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.006876 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.532241 B = 4071.300195 C = 5693.789405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.733 5.733 3 C 0.369 3.631 4 C -0.230 4.230 5 C -0.041 4.041 6 C -0.116 4.116 7 C -0.172 4.172 8 C -0.049 4.049 9 C -0.271 4.271 10 C 0.090 3.910 11 F -0.168 7.168 12 C -0.221 4.221 13 C 0.120 3.880 14 C -0.463 4.463 15 H 0.079 0.921 16 C 0.040 3.960 17 N -0.814 5.814 18 Si 0.970 3.030 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.260 1.260 22 C 0.151 3.849 23 N -0.568 5.568 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.405 0.595 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.291 0.709 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 -6.546 -1.669 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.366 5.366 3 C 0.133 3.867 4 C -0.255 4.255 5 C -0.067 4.067 6 C -0.121 4.121 7 C -0.174 4.174 8 C -0.067 4.067 9 C -0.291 4.291 10 C 0.071 3.929 11 F -0.147 7.147 12 C -0.242 4.242 13 C 0.117 3.883 14 C -0.492 4.492 15 H 0.097 0.903 16 C -0.176 4.176 17 N -0.439 5.439 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.189 1.189 21 H -0.184 1.184 22 C -0.005 4.005 23 N -0.286 5.286 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.239 0.761 28 H 0.175 0.825 29 H 0.163 0.837 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.634 -7.247 -1.664 13.807 hybrid contribution 0.821 0.573 0.675 1.208 sum -10.813 -6.674 -0.989 12.745 Atomic orbital electron populations 1.21774 0.77123 1.04392 1.01659 1.44278 1.06810 1.04255 1.81298 1.18785 0.88104 0.87915 0.91907 1.21237 1.01663 0.90873 1.11690 1.21417 0.92370 0.99048 0.93855 1.19360 0.93682 0.93182 1.05861 1.18757 1.03201 0.95156 1.00296 1.20732 0.97780 0.91438 0.96746 1.20510 1.02001 1.01635 1.04973 1.17991 0.93587 0.82031 0.99292 1.91322 1.78208 1.48809 1.96383 1.21152 1.05980 0.94371 1.02676 1.17581 0.89436 0.90909 0.90374 1.19599 0.95976 1.12974 1.20634 0.90268 1.26701 0.95246 0.96015 0.99683 1.69844 1.01589 1.35547 1.36959 0.85362 0.78990 0.78740 0.77780 1.18714 1.18915 1.18436 1.22455 0.99013 0.86633 0.92404 1.67120 1.07199 1.32096 1.22214 0.92486 0.92156 0.87999 0.76081 0.82515 0.83674 0.84843 0.85497 0.87322 0.89828 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 9.91 127.77 1.27 2.58 16 2 N -0.73 -16.98 5.87 -366.45 -2.15 -19.13 16 3 C 0.37 11.76 7.64 133.17 1.02 12.78 16 4 C -0.23 -6.67 9.26 22.23 0.21 -6.46 16 5 C -0.04 -1.38 9.63 22.46 0.22 -1.16 16 6 C -0.12 -4.77 4.93 -19.93 -0.10 -4.87 16 7 C -0.17 -7.86 5.54 -19.62 -0.11 -7.97 16 8 C -0.05 -2.01 9.52 22.44 0.21 -1.80 16 9 C -0.27 -11.70 10.01 22.44 0.22 -11.47 16 10 C 0.09 4.41 7.28 22.36 0.16 4.57 16 11 F -0.17 -7.99 17.26 44.97 0.78 -7.21 16 12 C -0.22 -11.75 8.63 22.73 0.20 -11.56 16 13 C 0.12 6.21 5.56 -21.12 -0.12 6.09 16 14 C -0.46 -23.81 7.12 23.34 0.17 -23.64 16 15 H 0.08 4.05 6.62 -2.91 -0.02 4.03 16 16 C 0.04 1.98 5.17 85.28 0.44 2.42 16 17 N -0.81 -41.89 10.96 21.84 0.24 -41.65 16 18 Si 0.97 38.18 29.59 68.60 2.03 40.21 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 20 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 C 0.15 6.44 9.19 85.03 0.78 7.22 16 23 N -0.57 -22.03 10.39 -192.09 -2.00 -24.03 16 24 H 0.06 0.77 7.91 -2.39 -0.02 0.76 16 25 H 0.06 0.78 7.91 -2.39 -0.02 0.76 16 26 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.40 8.77 8.95 -92.71 -0.83 7.94 16 28 H 0.16 3.32 6.66 -2.92 -0.02 3.30 16 29 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.13 4.53 8.05 -2.91 -0.02 4.51 16 31 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 32 H 0.11 6.11 6.23 -2.91 -0.02 6.09 16 33 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 34 H 0.14 6.34 7.29 -2.91 -0.02 6.32 16 Total: -1.00 -60.72 296.96 3.78 -56.94 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.32 Total: 28.13 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 4.57 Total: -33.26 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -3.91 Total: -84.81 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 0.78 Total: -7.21 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -60.72 3.78 -56.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242071375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.527 kcal (2) G-P(sol) polarization free energy of solvation -60.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds