Wall clock time and date at job start Mon Mar 30 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38937 * 119.99768 * 2 1 4 4 C 1.39235 * 119.57401 * 359.73216 * 3 2 1 5 5 C 1.38065 * 119.22194 * 179.97438 * 4 3 2 6 6 C 1.39978 * 118.40171 * 359.97438 * 5 4 3 7 7 C 1.48357 * 120.45558 * 179.97438 * 6 5 4 8 8 C 1.38675 * 120.01343 * 129.72381 * 7 6 5 9 9 C 1.40550 * 119.65034 * 179.77181 * 8 7 6 10 10 C 1.41341 * 120.15334 * 180.25024 * 9 8 7 11 11 H 1.08001 * 119.99829 * 330.39740 * 10 9 8 12 12 C 1.39889 * 120.00236 * 150.40044 * 10 9 8 13 13 N 1.30860 * 120.00393 * 161.72112 * 12 10 9 14 14 Si 1.86803 * 119.99904 * 341.71609 * 12 10 9 15 15 H 1.48504 * 109.46809 * 95.41605 * 14 12 10 16 16 H 1.48496 * 109.47191 * 215.41847 * 14 12 10 17 17 H 1.48502 * 109.47022 * 335.42031 * 14 12 10 18 18 C 1.40854 * 119.69144 * 0.47777 * 9 8 7 19 19 C 1.37567 * 120.02135 * 359.77131 * 18 9 8 20 20 C 1.38744 * 120.34967 * 0.02562 * 19 18 9 21 21 F 1.35100 * 119.84160 * 179.97438 * 20 19 18 22 22 C 1.39165 * 119.08886 * 359.97438 * 6 5 4 23 23 N 1.31826 * 120.68439 * 359.74733 * 22 6 5 24 24 H 1.08999 * 109.47326 * 60.26955 * 1 2 3 25 25 H 1.09001 * 109.46782 * 180.27152 * 1 2 3 26 26 H 1.09006 * 109.47239 * 300.27030 * 1 2 3 27 27 H 0.96999 * 120.00408 * 179.73404 * 2 1 3 28 28 H 1.07999 * 120.38858 * 359.95044 * 4 3 2 29 29 H 1.07995 * 120.79750 * 179.97438 * 5 4 3 30 30 H 1.07996 * 120.17480 * 359.97438 * 8 7 6 31 31 H 0.96995 * 120.00552 * 179.97438 * 13 12 10 32 32 H 1.08002 * 119.98624 * 179.74874 * 18 9 8 33 33 H 1.08001 * 119.82109 * 179.97438 * 19 18 9 34 34 H 1.08002 * 119.65829 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1596 1.2033 0.0000 4 6 1.4544 2.4038 -0.0057 5 6 2.1521 3.5953 -0.0051 6 6 3.5510 3.5477 0.0018 7 6 4.3460 4.8003 0.0021 8 6 5.3612 4.9772 0.9301 9 6 6.1128 6.1649 0.9204 10 6 7.1534 6.3542 1.8580 11 1 7.0958 5.8873 2.8302 12 6 8.2578 7.1463 1.5268 13 7 9.0315 7.6180 2.4709 14 14 8.6282 7.5308 -0.2633 15 1 8.0367 8.8455 -0.6199 16 1 10.0986 7.5783 -0.4654 17 1 8.0436 6.4743 -1.1278 18 6 5.8210 7.1675 -0.0248 19 6 4.8076 6.9804 -0.9361 20 6 4.0676 5.8067 -0.9305 21 9 3.0743 5.6340 -1.8298 22 6 4.1858 2.3093 0.0083 23 7 3.4838 1.1935 0.0130 24 1 -0.3634 0.5096 -0.8924 25 1 -0.3633 -1.0277 0.0049 26 1 -0.3634 0.5181 0.8876 27 1 1.9500 -0.8400 0.0039 28 1 0.3745 2.4031 -0.0108 29 1 1.6309 4.5411 -0.0098 30 1 5.5754 4.2052 1.6542 31 1 9.7975 8.1669 2.2412 32 1 6.3928 8.0837 -0.0339 33 1 4.5863 7.7515 -1.6592 34 1 5.2648 2.2619 0.0140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242071550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:25 Heat of formation + Delta-G solvation = 7.575018 kcal Electronic energy + Delta-G solvation = -19603.398730 eV Core-core repulsion = 16414.990180 eV Total energy + Delta-G solvation = -3188.408550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.68182 -39.94762 -37.70647 -35.73310 -33.71590 -32.46791 -31.07942 -30.15898 -28.39464 -26.06823 -24.96052 -23.24435 -22.65400 -20.99422 -20.47156 -17.77005 -17.46888 -16.78383 -16.40831 -15.46510 -14.97206 -14.88265 -14.64452 -14.51620 -14.27022 -14.08539 -13.25325 -13.14197 -13.00669 -12.73944 -12.68778 -12.29909 -11.99152 -11.93034 -11.75426 -10.94199 -10.67703 -10.41913 -10.34060 -9.95612 -9.72844 -9.48397 -9.32676 -9.10850 -8.11897 -7.67816 -7.16499 -7.05979 -4.58294 1.46164 1.63731 2.37605 2.49118 3.03749 3.15009 3.21691 3.25233 3.89383 4.14712 4.34287 4.83135 4.98103 5.14212 5.21269 5.25629 5.32438 5.40093 5.48246 5.54125 5.57191 5.82096 6.04835 6.25911 6.32670 6.47830 6.51680 6.68512 6.80571 6.97358 7.12887 7.19774 7.34345 7.42700 7.59010 7.68070 7.92816 8.21631 8.38544 8.47729 8.65894 9.95817 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.004584 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.848872 B = 6107.275447 C = 6627.104654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.737 5.737 3 C 0.386 3.614 4 C -0.238 4.238 5 C -0.018 4.018 6 C -0.131 4.131 7 C -0.035 4.035 8 C -0.170 4.170 9 C 0.086 3.914 10 C -0.440 4.440 11 H 0.094 0.906 12 C 0.084 3.916 13 N -0.802 5.802 14 Si 0.908 3.092 15 H -0.269 1.269 16 H -0.288 1.288 17 H -0.242 1.242 18 C -0.216 4.216 19 C -0.101 4.101 20 C -0.035 4.035 21 F -0.166 7.166 22 C 0.159 3.841 23 N -0.544 5.544 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.403 0.597 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.112 0.888 31 H 0.287 0.713 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -8.593 -4.503 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.371 5.371 3 C 0.152 3.848 4 C -0.262 4.262 5 C -0.044 4.044 6 C -0.136 4.136 7 C -0.036 4.036 8 C -0.190 4.190 9 C 0.082 3.918 10 C -0.468 4.468 11 H 0.112 0.888 12 C -0.136 4.136 13 N -0.425 5.425 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.216 1.216 17 H -0.165 1.165 18 C -0.236 4.236 19 C -0.120 4.120 20 C -0.055 4.055 21 F -0.145 7.145 22 C 0.001 3.999 23 N -0.261 5.261 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.237 0.763 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.808 -9.243 -4.372 14.878 hybrid contribution -0.137 0.850 -0.808 1.181 sum -10.944 -8.394 -5.180 14.733 Atomic orbital electron populations 1.21522 0.79419 1.02372 1.01260 1.44114 1.05431 1.05256 1.82284 1.18364 0.88462 0.86192 0.91819 1.21237 1.00373 0.91686 1.12949 1.21410 0.93205 0.97815 0.91981 1.19566 0.93393 0.94194 1.06401 1.18215 0.96976 0.91498 0.96958 1.20990 0.99072 0.97961 1.00969 1.17677 0.92750 0.90045 0.91285 1.19480 1.01429 1.24707 1.01168 0.88804 1.26172 0.95404 0.91869 1.00140 1.69699 1.13536 1.23809 1.35452 0.86348 0.76774 0.80724 0.82718 1.19474 1.21564 1.16523 1.20939 1.01272 0.99935 1.01428 1.20513 0.96671 0.95427 0.99416 1.17170 0.94918 0.97611 0.95759 1.91299 1.60257 1.96058 1.66877 1.22573 0.99556 0.85763 0.91968 1.67088 1.05918 1.32098 1.21001 0.92855 0.90686 0.92836 0.76287 0.85517 0.85066 0.86952 0.90230 0.87327 0.87456 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 9.91 59.84 0.59 1.36 16 2 N -0.74 -8.32 5.88 -67.19 -0.40 -8.71 16 3 C 0.39 5.81 7.65 -155.02 -1.19 4.62 16 4 C -0.24 -3.47 9.31 -39.27 -0.37 -3.84 16 5 C -0.02 -0.31 8.99 -38.99 -0.35 -0.66 16 6 C -0.13 -2.45 5.31 -104.74 -0.56 -3.00 16 7 C -0.03 -0.73 5.49 -104.91 -0.58 -1.31 16 8 C -0.17 -3.78 9.25 -38.55 -0.36 -4.14 16 9 C 0.09 2.06 5.10 -106.86 -0.55 1.52 16 10 C -0.44 -11.29 9.56 -37.78 -0.36 -11.65 16 11 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 12 C 0.08 2.10 5.40 -17.35 -0.09 2.01 16 13 N -0.80 -20.51 13.93 55.54 0.77 -19.74 16 14 Si 0.91 19.86 24.51 -169.99 -4.17 15.69 16 15 H -0.27 -5.68 6.70 56.52 0.38 -5.30 16 16 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.24 -5.43 6.87 56.52 0.39 -5.04 16 18 C -0.22 -4.99 7.16 -38.84 -0.28 -5.27 16 19 C -0.10 -2.18 9.99 -39.64 -0.40 -2.58 16 20 C -0.03 -0.75 7.20 -38.73 -0.28 -1.03 16 21 F -0.17 -3.43 15.92 2.25 0.04 -3.40 16 22 C 0.16 2.80 10.67 -17.21 -0.18 2.62 16 23 N -0.54 -9.22 10.38 -12.17 -0.13 -9.35 16 24 H 0.05 0.40 7.92 -51.93 -0.41 -0.01 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.40 7.92 -51.93 -0.41 -0.01 16 27 H 0.40 4.09 8.95 -40.82 -0.37 3.72 16 28 H 0.13 1.48 6.68 -52.49 -0.35 1.13 16 29 H 0.13 2.09 7.85 -52.49 -0.41 1.68 16 30 H 0.11 2.35 8.04 -52.49 -0.42 1.93 16 31 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 32 H 0.11 2.47 4.72 -52.49 -0.25 2.22 16 33 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.16 2.62 8.04 -52.49 -0.42 2.19 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -27.77 294.98 -7.85 -35.62 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -3.48 Total: 6.79 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -4.93 Total: -21.35 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.25 Total: -37.80 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.04 Total: -3.40 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.17 Total: 15.69 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.77 -7.85 -35.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242071550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.191 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds