Wall clock time and date at job start Mon Mar 30 2020 01:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38937 * 119.99768 * 2 1 4 4 C 1.39235 * 119.57401 * 359.73216 * 3 2 1 5 5 C 1.38065 * 119.22194 * 179.97438 * 4 3 2 6 6 C 1.39978 * 118.40171 * 359.97438 * 5 4 3 7 7 C 1.48357 * 120.45558 * 179.97438 * 6 5 4 8 8 C 1.38675 * 120.01343 * 129.72381 * 7 6 5 9 9 C 1.40550 * 119.65034 * 179.77181 * 8 7 6 10 10 C 1.41341 * 120.15334 * 180.25024 * 9 8 7 11 11 H 1.08001 * 119.99829 * 330.39740 * 10 9 8 12 12 C 1.39889 * 120.00236 * 150.40044 * 10 9 8 13 13 N 1.30860 * 120.00393 * 161.72112 * 12 10 9 14 14 Si 1.86803 * 119.99904 * 341.71609 * 12 10 9 15 15 H 1.48504 * 109.46809 * 95.41605 * 14 12 10 16 16 H 1.48496 * 109.47191 * 215.41847 * 14 12 10 17 17 H 1.48502 * 109.47022 * 335.42031 * 14 12 10 18 18 C 1.40854 * 119.69144 * 0.47777 * 9 8 7 19 19 C 1.37567 * 120.02135 * 359.77131 * 18 9 8 20 20 C 1.38744 * 120.34967 * 0.02562 * 19 18 9 21 21 F 1.35100 * 119.84160 * 179.97438 * 20 19 18 22 22 C 1.39165 * 119.08886 * 359.97438 * 6 5 4 23 23 N 1.31826 * 120.68439 * 359.74733 * 22 6 5 24 24 H 1.08999 * 109.47326 * 60.26955 * 1 2 3 25 25 H 1.09001 * 109.46782 * 180.27152 * 1 2 3 26 26 H 1.09006 * 109.47239 * 300.27030 * 1 2 3 27 27 H 0.96999 * 120.00408 * 179.73404 * 2 1 3 28 28 H 1.07999 * 120.38858 * 359.95044 * 4 3 2 29 29 H 1.07995 * 120.79750 * 179.97438 * 5 4 3 30 30 H 1.07996 * 120.17480 * 359.97438 * 8 7 6 31 31 H 0.96995 * 120.00552 * 179.97438 * 13 12 10 32 32 H 1.08002 * 119.98624 * 179.74874 * 18 9 8 33 33 H 1.08001 * 119.82109 * 179.97438 * 19 18 9 34 34 H 1.08002 * 119.65829 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1596 1.2033 0.0000 4 6 1.4544 2.4038 -0.0057 5 6 2.1521 3.5953 -0.0051 6 6 3.5510 3.5477 0.0018 7 6 4.3460 4.8003 0.0021 8 6 5.3612 4.9772 0.9301 9 6 6.1128 6.1649 0.9204 10 6 7.1534 6.3542 1.8580 11 1 7.0958 5.8873 2.8302 12 6 8.2578 7.1463 1.5268 13 7 9.0315 7.6180 2.4709 14 14 8.6282 7.5308 -0.2633 15 1 8.0367 8.8455 -0.6199 16 1 10.0986 7.5783 -0.4654 17 1 8.0436 6.4743 -1.1278 18 6 5.8210 7.1675 -0.0248 19 6 4.8076 6.9804 -0.9361 20 6 4.0676 5.8067 -0.9305 21 9 3.0743 5.6340 -1.8298 22 6 4.1858 2.3093 0.0083 23 7 3.4838 1.1935 0.0130 24 1 -0.3634 0.5096 -0.8924 25 1 -0.3633 -1.0277 0.0049 26 1 -0.3634 0.5181 0.8876 27 1 1.9500 -0.8400 0.0039 28 1 0.3745 2.4031 -0.0108 29 1 1.6309 4.5411 -0.0098 30 1 5.5754 4.2052 1.6542 31 1 9.7975 8.1669 2.2412 32 1 6.3928 8.0837 -0.0339 33 1 4.5863 7.7515 -1.6592 34 1 5.2648 2.2619 0.0140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242071550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:24 Heat of formation + Delta-G solvation = -8.034946 kcal Electronic energy + Delta-G solvation = -19604.075629 eV Core-core repulsion = 16414.990180 eV Total energy + Delta-G solvation = -3189.085449 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.38307 -41.19659 -39.40640 -36.81829 -35.49077 -33.85637 -32.45215 -31.96182 -29.70094 -27.15516 -26.67858 -24.52945 -24.05979 -22.60072 -22.08472 -19.40178 -18.70024 -18.41033 -17.69896 -17.18527 -16.61305 -16.41798 -16.13102 -15.60117 -15.36773 -15.34620 -14.97018 -14.70414 -14.43085 -14.10564 -14.03624 -13.71995 -13.58732 -13.32944 -12.91519 -12.62869 -12.46171 -12.11483 -11.99400 -11.54062 -11.25235 -11.00170 -10.70103 -10.47488 -9.68482 -9.40580 -8.92586 -8.45800 -6.51498 0.07211 0.36350 0.60528 0.87473 1.28498 1.41348 1.51115 2.11877 2.27611 2.46410 2.93290 3.36530 3.65080 3.74279 3.84208 4.06552 4.11027 4.21500 4.28720 4.49290 4.59620 4.68904 4.76773 4.78491 4.89368 4.93211 5.01058 5.16891 5.29815 5.41987 5.55276 5.61801 5.67796 5.82593 6.10329 6.14647 6.30237 6.59271 6.64182 6.75994 7.19921 8.15130 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.004584 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.848872 B = 6107.275447 C = 6627.104654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.727 5.727 3 C 0.385 3.615 4 C -0.231 4.231 5 C -0.022 4.022 6 C -0.164 4.164 7 C -0.026 4.026 8 C -0.179 4.179 9 C 0.074 3.926 10 C -0.474 4.474 11 H 0.063 0.937 12 C 0.052 3.948 13 N -0.841 5.841 14 Si 0.958 3.042 15 H -0.253 1.253 16 H -0.277 1.277 17 H -0.252 1.252 18 C -0.225 4.225 19 C -0.102 4.102 20 C -0.031 4.031 21 F -0.158 7.158 22 C 0.155 3.845 23 N -0.562 5.562 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.408 0.592 28 H 0.160 0.840 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.296 0.704 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.630 -9.555 -6.331 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.360 5.360 3 C 0.148 3.852 4 C -0.256 4.256 5 C -0.048 4.048 6 C -0.169 4.169 7 C -0.028 4.028 8 C -0.198 4.198 9 C 0.071 3.929 10 C -0.503 4.503 11 H 0.081 0.919 12 C -0.164 4.164 13 N -0.466 5.466 14 Si 0.781 3.219 15 H -0.178 1.178 16 H -0.203 1.203 17 H -0.175 1.175 18 C -0.245 4.245 19 C -0.120 4.120 20 C -0.051 4.051 21 F -0.137 7.137 22 C -0.002 4.002 23 N -0.280 5.280 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.244 0.756 28 H 0.178 0.822 29 H 0.155 0.845 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.155 0.845 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.265 -10.236 -6.196 17.864 hybrid contribution 0.320 0.911 -0.275 1.004 sum -12.945 -9.325 -6.471 17.216 Atomic orbital electron populations 1.21838 0.76925 1.04720 1.01835 1.44391 1.06983 1.04261 1.80366 1.18764 0.88139 0.87842 0.90467 1.21509 1.01914 0.90603 1.11529 1.21533 0.92430 0.99028 0.91771 1.19486 0.94254 0.93311 1.09828 1.18394 0.96247 0.92443 0.95676 1.21075 0.99601 0.97634 1.01537 1.17804 0.92618 0.91000 0.91491 1.19445 1.03361 1.26638 1.00817 0.91901 1.26789 0.94833 0.91476 1.03329 1.69721 1.14619 1.25291 1.37012 0.85594 0.77230 0.80742 0.78343 1.17822 1.20299 1.17547 1.21020 1.02005 0.99807 1.01623 1.20792 0.95712 0.96134 0.99407 1.17377 0.94630 0.97662 0.95400 1.91319 1.59841 1.96020 1.66501 1.22564 0.99818 0.85893 0.91938 1.67137 1.07088 1.31601 1.22157 0.92143 0.87694 0.92178 0.75628 0.82215 0.84510 0.86804 0.89347 0.87036 0.84483 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 9.91 127.77 1.27 2.27 16 2 N -0.73 -14.01 5.88 -366.48 -2.16 -16.17 16 3 C 0.38 10.59 7.65 133.10 1.02 11.61 16 4 C -0.23 -6.05 9.31 22.47 0.21 -5.84 16 5 C -0.02 -0.69 8.99 22.65 0.20 -0.49 16 6 C -0.16 -5.98 5.31 -19.94 -0.11 -6.09 16 7 C -0.03 -1.08 5.49 -20.05 -0.11 -1.19 16 8 C -0.18 -8.11 9.25 22.94 0.21 -7.90 16 9 C 0.07 3.62 5.10 -21.31 -0.11 3.51 16 10 C -0.47 -25.50 9.56 23.43 0.22 -25.28 16 11 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 12 C 0.05 2.66 5.40 85.24 0.46 3.12 16 13 N -0.84 -44.49 13.93 21.82 0.30 -44.18 16 14 Si 0.96 40.86 24.51 68.60 1.68 42.54 16 15 H -0.25 -10.08 6.70 99.48 0.67 -9.41 16 16 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.25 -11.03 6.87 99.48 0.68 -10.35 16 18 C -0.23 -10.26 7.16 22.75 0.16 -10.10 16 19 C -0.10 -4.19 9.99 22.23 0.22 -3.96 16 20 C -0.03 -1.28 7.20 22.82 0.16 -1.11 16 21 F -0.16 -6.15 15.92 44.97 0.72 -5.43 16 22 C 0.15 5.41 10.67 84.92 0.91 6.32 16 23 N -0.56 -18.31 10.38 -192.41 -2.00 -20.31 16 24 H 0.06 0.64 7.92 -2.39 -0.02 0.62 16 25 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.64 7.92 -2.38 -0.02 0.62 16 27 H 0.41 7.08 8.95 -92.71 -0.83 6.25 16 28 H 0.16 3.05 6.68 -2.91 -0.02 3.03 16 29 H 0.14 4.07 7.85 -2.91 -0.02 4.04 16 30 H 0.11 5.00 8.04 -2.91 -0.02 4.97 16 31 H 0.30 14.02 8.30 -92.71 -0.77 13.25 16 32 H 0.11 4.97 4.72 -2.91 -0.01 4.96 16 33 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 34 H 0.16 5.30 8.04 -2.91 -0.02 5.28 16 Total: -1.00 -60.47 294.98 3.52 -56.94 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.25 Total: 21.75 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 4.72 Total: -35.14 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -3.85 Total: -80.66 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.72 Total: -5.43 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.68 Total: 42.54 kcal Total: -60.47 3.52 -56.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242071550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.908 kcal (2) G-P(sol) polarization free energy of solvation -60.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds