Wall clock time and date at job start Mon Mar 30 2020 01:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.38760 * 119.99687 * 2 1 4 4 C 1.39349 * 119.53457 * 359.72301 * 3 2 1 5 5 C 1.36927 * 119.37908 * 179.97438 * 4 3 2 6 6 C 1.40281 * 118.49790 * 359.97438 * 5 4 3 7 7 C 1.47780 * 120.48030 * 179.97438 * 6 5 4 8 8 C 1.39137 * 120.26707 * 309.72552 * 7 6 5 9 9 C 1.38081 * 120.17428 * 179.74144 * 8 7 6 10 10 C 1.38859 * 120.72004 * 0.51608 * 9 8 7 11 11 C 1.37694 * 120.53452 * 359.76735 * 10 9 8 12 12 F 1.35101 * 120.10144 * 179.97438 * 11 10 9 13 13 C 1.41044 * 119.80687 * 359.97297 * 11 10 9 14 14 C 1.40761 * 120.35326 * 179.97438 * 13 11 10 15 15 H 1.07994 * 120.00186 * 143.34210 * 14 13 11 16 16 C 1.40038 * 119.99654 * 323.34726 * 14 13 11 17 17 N 1.30818 * 120.00227 * 340.04469 * 16 14 13 18 18 Si 1.86798 * 119.99954 * 160.04910 * 16 14 13 19 19 H 1.48504 * 109.47413 * 89.99545 * 18 16 14 20 20 H 1.48497 * 109.47406 * 210.00062 * 18 16 14 21 21 H 1.48505 * 109.47153 * 329.99913 * 18 16 14 22 22 C 1.39560 * 119.04225 * 0.02562 * 6 5 4 23 23 N 1.31761 * 120.51239 * 359.73629 * 22 6 5 24 24 H 1.09001 * 109.46759 * 300.27546 * 1 2 3 25 25 H 1.08994 * 109.46930 * 60.27784 * 1 2 3 26 26 H 1.09000 * 109.46929 * 180.27351 * 1 2 3 27 27 H 0.96994 * 120.00264 * 179.72010 * 2 1 3 28 28 H 1.07998 * 120.30667 * 359.95768 * 4 3 2 29 29 H 1.08002 * 120.74837 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.91209 * 0.02562 * 8 7 6 31 31 H 1.07996 * 119.64097 * 180.24013 * 9 8 7 32 32 H 1.07997 * 119.72723 * 179.74180 * 10 9 8 33 33 H 0.96994 * 119.99722 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.74655 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1588 1.2017 0.0000 4 6 1.4522 2.4028 -0.0059 5 6 2.1400 3.5868 -0.0053 6 6 3.5422 3.5463 0.0017 7 6 4.3283 4.7977 0.0020 8 6 4.0555 5.7974 -0.9264 9 6 4.7877 6.9681 -0.9210 10 6 5.8095 7.1615 -0.0009 11 6 6.1083 6.1893 0.9273 12 9 7.1047 6.3864 1.8182 13 6 5.3711 4.9870 0.9454 14 6 5.6672 3.9852 1.8889 15 1 4.8701 3.4009 2.3242 16 6 6.9953 3.7464 2.2631 17 7 7.9740 4.1464 1.4927 18 14 7.3695 2.8566 3.8624 19 1 7.4383 1.3946 3.6111 20 1 8.6713 3.3286 4.3986 21 1 6.2961 3.1392 4.8490 22 6 4.1842 2.3071 0.0074 23 7 3.4840 1.1910 0.0113 24 1 -0.3633 0.5181 0.8875 25 1 -0.3633 0.5095 -0.8924 26 1 -0.3633 -1.0277 0.0049 27 1 1.9501 -0.8400 0.0041 28 1 0.3723 2.3997 -0.0111 29 1 1.6148 4.5305 -0.0102 30 1 3.2660 5.6593 -1.6504 31 1 4.5661 7.7400 -1.6431 32 1 6.3747 8.0817 -0.0137 33 1 8.8939 3.9806 1.7518 34 1 5.2633 2.2627 0.0132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242073296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:10 Heat of formation + Delta-G solvation = 14.040371 kcal Electronic energy + Delta-G solvation = -20144.386295 eV Core-core repulsion = 16956.258104 eV Total energy + Delta-G solvation = -3188.128191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.98113 -39.63331 -37.35798 -35.28695 -33.69895 -32.15003 -30.78675 -29.42118 -28.00681 -25.95517 -25.07531 -22.86507 -22.07726 -20.89507 -19.98454 -17.52961 -17.26647 -16.28528 -15.94671 -15.32653 -14.57804 -14.37036 -14.27901 -14.14133 -14.00606 -13.70005 -13.52672 -12.84012 -12.78680 -12.38246 -12.07781 -11.91890 -11.48313 -11.44824 -11.29562 -11.15026 -10.68954 -10.59517 -10.23475 -9.69064 -9.53360 -9.15685 -9.07954 -8.79586 -7.75303 -7.25600 -6.91331 -6.79150 -4.43640 1.87104 2.02654 2.71261 2.80425 3.10500 3.12615 3.18007 3.52239 3.95568 4.52237 4.62841 5.08921 5.27072 5.34387 5.44138 5.50682 5.65427 5.75294 5.85061 5.93376 6.02373 6.06177 6.36568 6.47516 6.60499 6.67383 6.91369 7.00435 7.12206 7.24927 7.44541 7.47830 7.57921 7.73914 7.82074 7.94527 8.10954 8.37475 8.70541 8.78691 8.83298 10.13726 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.007075 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.719531 B = 3956.702039 C = 5322.806947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.740 5.740 3 C 0.372 3.628 4 C -0.241 4.241 5 C -0.046 4.046 6 C -0.091 4.091 7 C -0.139 4.139 8 C -0.086 4.086 9 C -0.214 4.214 10 C -0.134 4.134 11 C 0.041 3.959 12 F -0.143 7.143 13 C 0.105 3.895 14 C -0.460 4.460 15 H 0.085 0.915 16 C 0.082 3.918 17 N -0.772 5.772 18 Si 0.903 3.097 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.261 1.261 22 C 0.170 3.830 23 N -0.546 5.546 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.400 0.600 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.285 0.715 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 -3.936 -2.062 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.375 5.375 3 C 0.138 3.862 4 C -0.265 4.265 5 C -0.072 4.072 6 C -0.095 4.095 7 C -0.141 4.141 8 C -0.105 4.105 9 C -0.233 4.233 10 C -0.154 4.154 11 C 0.021 3.979 12 F -0.122 7.122 13 C 0.101 3.899 14 C -0.488 4.488 15 H 0.103 0.897 16 C -0.139 4.139 17 N -0.395 5.395 18 Si 0.727 3.273 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.185 1.185 22 C 0.013 3.987 23 N -0.263 5.263 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.234 0.766 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.906 -4.692 -2.048 10.273 hybrid contribution 0.227 0.215 0.841 0.897 sum -8.679 -4.478 -1.207 9.840 Atomic orbital electron populations 1.21450 0.79882 1.01947 1.00975 1.44006 1.05126 1.05366 1.83014 1.18374 0.88691 0.85972 0.93151 1.20883 0.99875 0.92020 1.13754 1.21169 0.93600 0.97354 0.95076 1.19408 0.92351 0.94360 1.03385 1.18255 1.02875 0.93635 0.99384 1.20613 0.98667 0.93451 0.97720 1.20058 1.01422 0.98781 1.03064 1.20638 0.99620 0.98238 0.96881 1.17751 0.91821 0.95050 0.93301 1.91332 1.59294 1.95020 1.66557 1.17473 0.89852 0.91083 0.91475 1.19255 0.92802 1.16430 1.20351 0.89718 1.25795 0.95793 0.94950 0.97403 1.69742 1.01064 1.34322 1.34408 0.86367 0.78768 0.79781 0.82353 1.19333 1.20018 1.18456 1.22840 0.99935 0.85649 0.90257 1.67181 1.05608 1.32644 1.20844 0.93127 0.93152 0.91046 0.76561 0.86287 0.85772 0.88618 0.88372 0.88185 0.90441 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 9.91 59.85 0.59 1.57 16 2 N -0.74 -9.97 5.88 -67.18 -0.39 -10.37 16 3 C 0.37 6.48 7.64 -155.06 -1.18 5.30 16 4 C -0.24 -3.96 9.26 -39.64 -0.37 -4.33 16 5 C -0.05 -0.84 9.63 -39.29 -0.38 -1.22 16 6 C -0.09 -1.92 4.97 -104.74 -0.52 -2.44 16 7 C -0.14 -3.20 5.54 -104.27 -0.58 -3.78 16 8 C -0.09 -1.81 9.52 -39.31 -0.37 -2.19 16 9 C -0.21 -4.48 10.02 -39.41 -0.40 -4.87 16 10 C -0.13 -3.06 9.99 -39.55 -0.40 -3.45 16 11 C 0.04 1.06 6.68 -38.72 -0.26 0.80 16 12 F -0.14 -3.83 14.27 2.25 0.03 -3.80 16 13 C 0.10 2.68 5.40 -106.48 -0.57 2.10 16 14 C -0.46 -11.84 6.67 -37.95 -0.25 -12.09 16 15 H 0.08 2.18 7.24 -52.49 -0.38 1.80 16 16 C 0.08 2.05 4.51 -17.31 -0.08 1.97 16 17 N -0.77 -20.08 11.13 55.55 0.62 -19.46 16 18 Si 0.90 19.29 29.60 -169.99 -5.03 14.26 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 22 C 0.17 3.66 9.41 -17.09 -0.16 3.50 16 23 N -0.55 -10.97 10.39 -12.08 -0.13 -11.09 16 24 H 0.05 0.47 7.91 -51.93 -0.41 0.06 16 25 H 0.05 0.45 7.92 -51.93 -0.41 0.04 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.40 4.99 8.95 -40.82 -0.37 4.63 16 28 H 0.12 1.59 6.67 -52.49 -0.35 1.24 16 29 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 30 H 0.10 1.77 8.05 -52.48 -0.42 1.35 16 31 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 34 H 0.16 3.74 7.31 -52.49 -0.38 3.36 16 LS Contribution 296.37 15.07 4.47 4.47 Total: -1.00 -28.41 296.37 -8.91 -37.32 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.55 Total: 7.81 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -4.92 Total: -19.13 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.10 Total: -40.92 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.03 Total: -3.80 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.41 -8.91 -37.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242073296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.360 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds