Wall clock time and date at job start Mon Mar 30 2020 01:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.38760 * 119.99687 * 2 1 4 4 C 1.39349 * 119.53457 * 359.72301 * 3 2 1 5 5 C 1.36927 * 119.37908 * 179.97438 * 4 3 2 6 6 C 1.40281 * 118.49790 * 359.97438 * 5 4 3 7 7 C 1.47780 * 120.48030 * 179.97438 * 6 5 4 8 8 C 1.39137 * 120.26707 * 309.72552 * 7 6 5 9 9 C 1.38081 * 120.17428 * 179.74144 * 8 7 6 10 10 C 1.38859 * 120.72004 * 0.51608 * 9 8 7 11 11 C 1.37694 * 120.53452 * 359.76735 * 10 9 8 12 12 F 1.35101 * 120.10144 * 179.97438 * 11 10 9 13 13 C 1.41044 * 119.80687 * 359.97297 * 11 10 9 14 14 C 1.40761 * 120.35326 * 179.97438 * 13 11 10 15 15 H 1.07994 * 120.00186 * 143.34210 * 14 13 11 16 16 C 1.40038 * 119.99654 * 323.34726 * 14 13 11 17 17 N 1.30818 * 120.00227 * 340.04469 * 16 14 13 18 18 Si 1.86798 * 119.99954 * 160.04910 * 16 14 13 19 19 H 1.48504 * 109.47413 * 89.99545 * 18 16 14 20 20 H 1.48497 * 109.47406 * 210.00062 * 18 16 14 21 21 H 1.48505 * 109.47153 * 329.99913 * 18 16 14 22 22 C 1.39560 * 119.04225 * 0.02562 * 6 5 4 23 23 N 1.31761 * 120.51239 * 359.73629 * 22 6 5 24 24 H 1.09001 * 109.46759 * 300.27546 * 1 2 3 25 25 H 1.08994 * 109.46930 * 60.27784 * 1 2 3 26 26 H 1.09000 * 109.46929 * 180.27351 * 1 2 3 27 27 H 0.96994 * 120.00264 * 179.72010 * 2 1 3 28 28 H 1.07998 * 120.30667 * 359.95768 * 4 3 2 29 29 H 1.08002 * 120.74837 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.91209 * 0.02562 * 8 7 6 31 31 H 1.07996 * 119.64097 * 180.24013 * 9 8 7 32 32 H 1.07997 * 119.72723 * 179.74180 * 10 9 8 33 33 H 0.96994 * 119.99722 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.74655 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1588 1.2017 0.0000 4 6 1.4522 2.4028 -0.0059 5 6 2.1400 3.5868 -0.0053 6 6 3.5422 3.5463 0.0017 7 6 4.3283 4.7977 0.0020 8 6 4.0555 5.7974 -0.9264 9 6 4.7877 6.9681 -0.9210 10 6 5.8095 7.1615 -0.0009 11 6 6.1083 6.1893 0.9273 12 9 7.1047 6.3864 1.8182 13 6 5.3711 4.9870 0.9454 14 6 5.6672 3.9852 1.8889 15 1 4.8701 3.4009 2.3242 16 6 6.9953 3.7464 2.2631 17 7 7.9740 4.1464 1.4927 18 14 7.3695 2.8566 3.8624 19 1 7.4383 1.3946 3.6111 20 1 8.6713 3.3286 4.3986 21 1 6.2961 3.1392 4.8490 22 6 4.1842 2.3071 0.0074 23 7 3.4840 1.1910 0.0113 24 1 -0.3633 0.5181 0.8875 25 1 -0.3633 0.5095 -0.8924 26 1 -0.3633 -1.0277 0.0049 27 1 1.9501 -0.8400 0.0041 28 1 0.3723 2.3997 -0.0111 29 1 1.6148 4.5305 -0.0102 30 1 3.2660 5.6593 -1.6504 31 1 4.5661 7.7400 -1.6431 32 1 6.3747 8.0817 -0.0137 33 1 8.8939 3.9806 1.7518 34 1 5.2633 2.2627 0.0132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242073296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:10 Heat of formation + Delta-G solvation = -1.644459 kcal Electronic energy + Delta-G solvation = -20145.066440 eV Core-core repulsion = 16956.258104 eV Total energy + Delta-G solvation = -3188.808337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.93356 -41.07543 -39.03880 -36.50780 -35.52469 -33.64290 -32.35839 -31.14832 -29.45500 -27.39015 -26.57732 -24.31724 -23.56774 -22.67036 -21.60393 -19.33733 -18.56016 -17.84025 -17.48831 -17.09831 -16.32944 -15.98987 -15.69331 -15.62938 -15.47733 -15.24510 -14.98578 -14.52706 -14.08463 -13.81219 -13.61955 -13.25933 -13.14059 -13.05168 -12.92317 -12.79506 -12.39127 -12.32208 -11.93101 -11.33049 -11.02141 -10.89797 -10.54746 -10.28197 -9.39468 -9.06364 -8.70297 -8.28320 -6.33027 0.31646 0.58327 0.94459 1.10180 1.33244 1.42073 1.46389 2.18807 2.41731 2.72535 3.10441 3.54103 3.85414 4.09145 4.20867 4.32654 4.37916 4.40480 4.46063 4.60205 4.73961 4.78904 4.85353 4.96900 5.06847 5.15116 5.23593 5.32341 5.46765 5.68300 5.74406 5.82361 6.01596 6.07127 6.28470 6.31082 6.50311 6.71553 6.85964 6.96342 7.39986 8.32166 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.007075 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.719531 B = 3956.702039 C = 5322.806947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.733 5.733 3 C 0.370 3.630 4 C -0.231 4.231 5 C -0.039 4.039 6 C -0.121 4.121 7 C -0.135 4.135 8 C -0.090 4.090 9 C -0.198 4.198 10 C -0.142 4.142 11 C 0.001 3.999 12 F -0.160 7.160 13 C 0.073 3.927 14 C -0.483 4.483 15 H 0.072 0.928 16 C 0.045 3.955 17 N -0.811 5.811 18 Si 0.959 3.041 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.263 1.263 22 C 0.157 3.843 23 N -0.571 5.571 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.404 0.596 28 H 0.159 0.841 29 H 0.148 0.852 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.287 0.713 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.591 -4.225 -2.946 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.366 5.366 3 C 0.134 3.866 4 C -0.255 4.255 5 C -0.064 4.064 6 C -0.125 4.125 7 C -0.137 4.137 8 C -0.109 4.109 9 C -0.217 4.217 10 C -0.161 4.161 11 C -0.019 4.019 12 F -0.139 7.139 13 C 0.070 3.930 14 C -0.512 4.512 15 H 0.090 0.910 16 C -0.172 4.172 17 N -0.436 5.436 18 Si 0.781 3.219 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.187 1.187 22 C 0.000 4.000 23 N -0.289 5.289 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.239 0.761 28 H 0.177 0.823 29 H 0.166 0.834 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.098 -5.001 -2.939 13.417 hybrid contribution 0.942 0.248 0.951 1.361 sum -11.155 -4.753 -1.988 12.288 Atomic orbital electron populations 1.21783 0.77038 1.04422 1.01703 1.44296 1.06852 1.04221 1.81267 1.18809 0.88064 0.88000 0.91768 1.21243 1.01706 0.90805 1.11744 1.21406 0.92169 0.99154 0.93696 1.19372 0.93797 0.93176 1.06199 1.18635 1.01701 0.94835 0.98554 1.21016 0.99386 0.92885 0.97573 1.20562 0.99497 0.99422 1.02227 1.20960 1.00311 0.98286 0.96540 1.18195 0.92600 0.96375 0.94775 1.91270 1.60104 1.95165 1.67314 1.17830 0.91357 0.91276 0.92569 1.19217 0.92890 1.17259 1.21798 0.91036 1.26440 0.95481 0.95499 0.99758 1.69789 1.01307 1.36648 1.35862 0.85525 0.78566 0.78910 0.78862 1.18752 1.19228 1.18663 1.22383 0.98841 0.86739 0.92005 1.67118 1.07301 1.32122 1.22325 0.92479 0.92047 0.87984 0.76119 0.82331 0.83419 0.85255 0.84427 0.86311 0.90274 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 9.91 127.77 1.27 2.62 16 2 N -0.73 -17.53 5.88 -366.45 -2.15 -19.69 16 3 C 0.37 12.13 7.64 133.16 1.02 13.15 16 4 C -0.23 -6.81 9.26 22.23 0.21 -6.60 16 5 C -0.04 -1.31 9.63 22.46 0.22 -1.09 16 6 C -0.12 -5.09 4.97 -19.94 -0.10 -5.19 16 7 C -0.14 -6.25 5.54 -19.63 -0.11 -6.36 16 8 C -0.09 -3.62 9.52 22.45 0.21 -3.41 16 9 C -0.20 -7.80 10.02 22.38 0.22 -7.57 16 10 C -0.14 -6.39 9.99 22.29 0.22 -6.17 16 11 C 0.00 0.04 6.68 22.83 0.15 0.20 16 12 F -0.16 -8.95 14.27 44.97 0.64 -8.30 16 13 C 0.07 3.87 5.40 -21.07 -0.11 3.75 16 14 C -0.48 -26.23 6.67 23.32 0.16 -26.07 16 15 H 0.07 3.92 7.24 -2.91 -0.02 3.90 16 16 C 0.05 2.38 4.51 85.28 0.38 2.77 16 17 N -0.81 -44.53 11.13 21.85 0.24 -44.29 16 18 Si 0.96 41.34 29.60 68.60 2.03 43.37 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 C 0.16 6.97 9.41 85.02 0.80 7.77 16 23 N -0.57 -23.02 10.39 -192.12 -2.00 -25.01 16 24 H 0.06 0.80 7.91 -2.39 -0.02 0.78 16 25 H 0.06 0.80 7.92 -2.39 -0.02 0.78 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.40 9.12 8.95 -92.71 -0.83 8.29 16 28 H 0.16 3.39 6.67 -2.91 -0.02 3.37 16 29 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.13 4.28 8.05 -2.91 -0.02 4.26 16 31 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 32 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 33 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 34 H 0.13 6.53 7.31 -2.91 -0.02 6.51 16 Total: -1.00 -65.06 296.37 3.61 -61.45 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.31 Total: 24.67 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 4.54 Total: -32.20 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -3.91 Total: -88.99 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.64 Total: -8.30 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -65.06 3.61 -61.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242073296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.802 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds