Wall clock time and date at job start Mon Mar 30 2020 01:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38916 * 119.99498 * 2 1 4 4 C 1.39236 * 119.58143 * 359.72401 * 3 2 1 5 5 C 1.38053 * 119.22399 * 179.97438 * 4 3 2 6 6 C 1.39965 * 118.40227 * 359.97438 * 5 4 3 7 7 C 1.48386 * 120.45665 * 179.97438 * 6 5 4 8 8 C 1.39709 * 119.98526 * 0.02562 * 7 6 5 9 9 C 1.38614 * 120.35214 * 180.02562 * 8 7 6 10 10 F 1.35100 * 119.84229 * 179.97438 * 9 8 7 11 11 C 1.37947 * 120.32658 * 359.97419 * 9 8 7 12 12 C 1.40720 * 119.96993 * 0.02562 * 11 9 8 13 13 C 1.41421 * 120.17647 * 179.97438 * 12 11 9 14 14 H 1.08005 * 120.00115 * 154.74676 * 13 12 11 15 15 C 1.39924 * 120.00005 * 334.75099 * 13 12 11 16 16 N 1.30842 * 119.99958 * 342.81710 * 15 13 12 17 17 Si 1.86795 * 120.00442 * 162.81925 * 15 13 12 18 18 H 1.48501 * 109.47169 * 59.99560 * 17 15 13 19 19 H 1.48497 * 109.47306 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47034 * 300.00101 * 17 15 13 21 21 C 1.38746 * 119.99001 * 179.72027 * 7 6 5 22 22 C 1.39155 * 119.09509 * 359.97438 * 6 5 4 23 23 N 1.31821 * 120.68622 * 359.74544 * 22 6 5 24 24 H 1.08998 * 109.46773 * 60.27662 * 1 2 3 25 25 H 1.09002 * 109.46790 * 180.27653 * 1 2 3 26 26 H 1.08992 * 109.47299 * 300.27799 * 1 2 3 27 27 H 0.97002 * 119.99985 * 179.72204 * 2 1 3 28 28 H 1.08008 * 120.38622 * 359.95326 * 4 3 2 29 29 H 1.07995 * 120.80174 * 180.02562 * 5 4 3 30 30 H 1.08004 * 119.82897 * 359.97438 * 8 7 6 31 31 H 1.07994 * 120.01948 * 179.97438 * 11 9 8 32 32 H 0.96991 * 120.00204 * 180.02562 * 16 15 13 33 33 H 1.08008 * 120.16291 * 0.03109 * 21 7 6 34 34 H 1.08001 * 119.66209 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1595 1.2031 0.0000 4 6 1.4545 2.4037 -0.0058 5 6 2.1521 3.5950 -0.0053 6 6 3.5509 3.5474 0.0018 7 6 4.3461 4.8002 0.0021 8 6 3.6987 6.0382 -0.0041 9 6 4.4341 7.2132 -0.0043 10 9 3.7974 8.4048 -0.0109 11 6 5.8129 7.1720 0.0021 12 6 6.4791 5.9325 0.0083 13 6 7.8925 5.8851 0.0143 14 1 8.4022 5.0227 0.4179 15 6 8.6306 6.9556 -0.5025 16 7 8.0525 7.8326 -1.2827 17 14 10.4412 7.1327 -0.0788 18 1 11.1785 5.9307 -0.5443 19 1 10.9904 8.3395 -0.7475 20 1 10.5944 7.2684 1.3921 21 6 5.7323 4.7417 0.0150 22 6 4.1858 2.3092 0.0084 23 7 3.4839 1.1933 0.0132 24 1 -0.3633 0.5095 -0.8925 25 1 -0.3633 -1.0277 0.0050 26 1 -0.3633 0.5181 0.8874 27 1 1.9501 -0.8401 0.0041 28 1 0.3744 2.4030 -0.0111 29 1 1.6311 4.5410 -0.0093 30 1 2.6195 6.0801 -0.0095 31 1 6.3809 8.0905 0.0014 32 1 8.5642 8.5744 -1.6413 33 1 6.2351 3.7859 0.0243 34 1 5.2647 2.2617 0.0143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242073460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:27 Heat of formation + Delta-G solvation = 5.452973 kcal Electronic energy + Delta-G solvation = -19323.784250 eV Core-core repulsion = 16135.283682 eV Total energy + Delta-G solvation = -3188.500569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.67359 -39.96411 -37.50366 -35.65046 -33.89226 -32.26011 -30.75263 -29.71536 -27.95839 -25.91927 -25.59021 -23.24540 -22.50679 -20.58978 -20.33942 -17.78779 -17.45767 -16.59573 -15.88354 -15.11593 -14.99864 -14.69094 -14.65891 -14.34364 -14.25403 -14.05298 -13.68871 -13.19468 -13.08443 -12.65951 -12.27860 -11.98531 -11.81722 -11.61872 -11.24372 -11.10852 -10.83834 -10.56691 -10.15958 -9.93073 -9.71647 -9.47231 -9.23326 -9.10030 -8.06030 -7.52124 -6.92182 -6.77793 -4.53781 1.41780 1.64710 2.62985 2.91129 3.02724 3.04721 3.14946 3.24564 3.85118 4.22653 4.57476 4.85147 4.99383 5.17852 5.26812 5.34803 5.41610 5.48302 5.50198 5.53565 5.81351 6.03840 6.22145 6.32104 6.47281 6.59672 6.76294 6.88759 6.96601 7.11763 7.17530 7.44584 7.59445 7.63344 7.70954 7.83153 8.10957 8.42480 8.45263 8.72071 8.73946 10.06097 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.004300 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.877268 B = 6509.655829 C = 7506.157043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.737 5.737 3 C 0.381 3.619 4 C -0.237 4.237 5 C -0.034 4.034 6 C -0.122 4.122 7 C 0.004 3.996 8 C -0.267 4.267 9 C 0.107 3.893 10 F -0.167 7.167 11 C -0.197 4.197 12 C 0.130 3.870 13 C -0.457 4.457 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.787 5.787 17 Si 0.912 3.088 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.215 4.215 22 C 0.151 3.849 23 N -0.543 5.543 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.402 0.598 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.284 0.716 33 H 0.104 0.896 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 -9.046 1.665 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.372 5.372 3 C 0.146 3.854 4 C -0.261 4.261 5 C -0.059 4.059 6 C -0.126 4.126 7 C 0.003 3.997 8 C -0.287 4.287 9 C 0.088 3.912 10 F -0.146 7.146 11 C -0.217 4.217 12 C 0.127 3.873 13 C -0.485 4.485 14 H 0.102 0.898 15 C -0.144 4.144 16 N -0.411 5.411 17 Si 0.736 3.264 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.235 4.235 22 C -0.006 4.006 23 N -0.259 5.259 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.237 0.763 28 H 0.144 0.856 29 H 0.152 0.848 30 H 0.120 0.880 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.954 -9.556 1.516 13.183 hybrid contribution 0.346 0.912 0.012 0.976 sum -8.608 -8.644 1.528 12.294 Atomic orbital electron populations 1.21512 0.79489 1.02324 1.01208 1.44097 1.05378 1.05266 1.82414 1.18367 0.88504 0.86176 0.92319 1.21248 1.00321 0.91775 1.12777 1.21462 0.93519 0.97791 0.93152 1.19718 0.93303 0.94483 1.05126 1.17855 0.92548 0.89587 0.99751 1.20222 0.97730 0.90886 1.19878 1.17552 0.91060 0.79267 1.03308 1.91338 1.82888 1.45808 1.94553 1.21350 0.90463 1.00281 1.09653 1.17267 0.93288 0.89718 0.87016 1.19575 0.90888 1.03022 1.35056 0.89793 1.25972 1.01452 0.94496 0.92482 1.69804 1.38965 1.11119 1.21197 0.86296 0.81384 0.78675 0.80039 1.18810 1.20255 1.18648 1.21097 0.91646 0.97636 1.13107 1.22636 0.99766 0.85945 0.92290 1.67102 1.05890 1.32233 1.20678 0.92886 0.90732 0.92904 0.76327 0.85619 0.84846 0.88007 0.85303 0.90451 0.87814 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.77 9.91 59.85 0.59 1.36 16 2 N -0.74 -8.34 5.88 -67.19 -0.40 -8.73 16 3 C 0.38 5.72 7.64 -155.03 -1.19 4.54 16 4 C -0.24 -3.42 9.31 -39.28 -0.37 -3.78 16 5 C -0.03 -0.55 9.52 -39.00 -0.37 -0.92 16 6 C -0.12 -2.29 5.89 -104.73 -0.62 -2.91 16 7 C 0.00 0.08 5.87 -104.98 -0.62 -0.54 16 8 C -0.27 -5.95 9.42 -38.89 -0.37 -6.32 16 9 C 0.11 2.61 7.28 -39.55 -0.29 2.32 16 10 F -0.17 -3.92 17.26 2.25 0.04 -3.88 16 11 C -0.20 -5.11 8.66 -38.75 -0.34 -5.45 16 12 C 0.13 3.32 5.56 -106.87 -0.59 2.73 16 13 C -0.46 -11.53 9.05 -37.74 -0.34 -11.87 16 14 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 15 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 16 N -0.79 -19.85 10.96 55.55 0.61 -19.24 16 17 Si 0.91 17.99 29.59 -169.99 -5.03 12.95 16 18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 C -0.22 -4.98 9.17 -38.52 -0.35 -5.34 16 22 C 0.15 2.69 10.59 -17.22 -0.18 2.51 16 23 N -0.54 -9.24 10.38 -12.17 -0.13 -9.36 16 24 H 0.05 0.40 7.92 -51.93 -0.41 -0.02 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 27 H 0.40 4.11 8.95 -40.82 -0.37 3.74 16 28 H 0.13 1.45 6.68 -52.48 -0.35 1.10 16 29 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 30 H 0.10 2.02 6.24 -52.48 -0.33 1.69 16 31 H 0.13 3.47 6.18 -52.49 -0.32 3.14 16 32 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 33 H 0.10 2.19 6.21 -52.48 -0.33 1.86 16 34 H 0.16 2.71 6.20 -52.49 -0.33 2.38 16 LS Contribution 295.36 15.07 4.45 4.45 Total: -1.00 -28.14 295.36 -8.71 -36.85 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.14 Total: 8.89 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -5.11 Total: -21.93 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.09 Total: -37.33 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.14 -8.71 -36.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242073460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.302 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds