Wall clock time and date at job start Mon Mar 30 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38916 * 119.99498 * 2 1 4 4 C 1.39236 * 119.58143 * 359.72401 * 3 2 1 5 5 C 1.38053 * 119.22399 * 179.97438 * 4 3 2 6 6 C 1.39965 * 118.40227 * 359.97438 * 5 4 3 7 7 C 1.48386 * 120.45665 * 179.97438 * 6 5 4 8 8 C 1.39709 * 119.98526 * 0.02562 * 7 6 5 9 9 C 1.38614 * 120.35214 * 180.02562 * 8 7 6 10 10 F 1.35100 * 119.84229 * 179.97438 * 9 8 7 11 11 C 1.37947 * 120.32658 * 359.97419 * 9 8 7 12 12 C 1.40720 * 119.96993 * 0.02562 * 11 9 8 13 13 C 1.41421 * 120.17647 * 179.97438 * 12 11 9 14 14 H 1.08005 * 120.00115 * 154.74676 * 13 12 11 15 15 C 1.39924 * 120.00005 * 334.75099 * 13 12 11 16 16 N 1.30842 * 119.99958 * 342.81710 * 15 13 12 17 17 Si 1.86795 * 120.00442 * 162.81925 * 15 13 12 18 18 H 1.48501 * 109.47169 * 59.99560 * 17 15 13 19 19 H 1.48497 * 109.47306 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47034 * 300.00101 * 17 15 13 21 21 C 1.38746 * 119.99001 * 179.72027 * 7 6 5 22 22 C 1.39155 * 119.09509 * 359.97438 * 6 5 4 23 23 N 1.31821 * 120.68622 * 359.74544 * 22 6 5 24 24 H 1.08998 * 109.46773 * 60.27662 * 1 2 3 25 25 H 1.09002 * 109.46790 * 180.27653 * 1 2 3 26 26 H 1.08992 * 109.47299 * 300.27799 * 1 2 3 27 27 H 0.97002 * 119.99985 * 179.72204 * 2 1 3 28 28 H 1.08008 * 120.38622 * 359.95326 * 4 3 2 29 29 H 1.07995 * 120.80174 * 180.02562 * 5 4 3 30 30 H 1.08004 * 119.82897 * 359.97438 * 8 7 6 31 31 H 1.07994 * 120.01948 * 179.97438 * 11 9 8 32 32 H 0.96991 * 120.00204 * 180.02562 * 16 15 13 33 33 H 1.08008 * 120.16291 * 0.03109 * 21 7 6 34 34 H 1.08001 * 119.66209 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1595 1.2031 0.0000 4 6 1.4545 2.4037 -0.0058 5 6 2.1521 3.5950 -0.0053 6 6 3.5509 3.5474 0.0018 7 6 4.3461 4.8002 0.0021 8 6 3.6987 6.0382 -0.0041 9 6 4.4341 7.2132 -0.0043 10 9 3.7974 8.4048 -0.0109 11 6 5.8129 7.1720 0.0021 12 6 6.4791 5.9325 0.0083 13 6 7.8925 5.8851 0.0143 14 1 8.4022 5.0227 0.4179 15 6 8.6306 6.9556 -0.5025 16 7 8.0525 7.8326 -1.2827 17 14 10.4412 7.1327 -0.0788 18 1 11.1785 5.9307 -0.5443 19 1 10.9904 8.3395 -0.7475 20 1 10.5944 7.2684 1.3921 21 6 5.7323 4.7417 0.0150 22 6 4.1858 2.3092 0.0084 23 7 3.4839 1.1933 0.0132 24 1 -0.3633 0.5095 -0.8925 25 1 -0.3633 -1.0277 0.0050 26 1 -0.3633 0.5181 0.8874 27 1 1.9501 -0.8401 0.0041 28 1 0.3744 2.4030 -0.0111 29 1 1.6311 4.5410 -0.0093 30 1 2.6195 6.0801 -0.0095 31 1 6.3809 8.0905 0.0014 32 1 8.5642 8.5744 -1.6413 33 1 6.2351 3.7859 0.0243 34 1 5.2647 2.2617 0.0143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242073460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:26 Heat of formation + Delta-G solvation = -9.602465 kcal Electronic energy + Delta-G solvation = -19324.437103 eV Core-core repulsion = 16135.283682 eV Total energy + Delta-G solvation = -3189.153422 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.56756 -41.22575 -39.20313 -36.79528 -35.58175 -33.64768 -32.15697 -31.53433 -29.31756 -27.47737 -26.87879 -24.59688 -23.89608 -22.32870 -21.92574 -19.40618 -18.70786 -17.95149 -17.60188 -16.73337 -16.62835 -16.29807 -16.22940 -15.69009 -15.62525 -15.29166 -15.07991 -14.70345 -14.17511 -14.04728 -13.80355 -13.45868 -13.16498 -12.92739 -12.88890 -12.67566 -12.53769 -12.14857 -11.95430 -11.48954 -11.34512 -10.95258 -10.67041 -10.38511 -9.56796 -9.35872 -8.69839 -8.23314 -6.45237 0.00489 0.40254 0.80442 1.23944 1.40445 1.52067 1.56926 2.19860 2.30503 2.60818 3.06366 3.63110 3.64769 3.70742 4.00871 4.10804 4.19487 4.29136 4.49691 4.58232 4.65584 4.70869 4.83769 4.94862 4.97064 5.03186 5.16015 5.19932 5.32332 5.58849 5.67556 5.74568 5.93234 5.96355 6.14006 6.26297 6.56593 6.62451 6.84638 6.86928 7.23806 8.27558 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.004300 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.877268 B = 6509.655829 C = 7506.157043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.728 5.728 3 C 0.381 3.619 4 C -0.231 4.231 5 C -0.030 4.030 6 C -0.156 4.156 7 C 0.016 3.984 8 C -0.268 4.268 9 C 0.097 3.903 10 F -0.165 7.165 11 C -0.229 4.229 12 C 0.107 3.893 13 C -0.489 4.489 14 H 0.089 0.911 15 C 0.034 3.966 16 N -0.822 5.822 17 Si 0.986 3.014 18 H -0.255 1.255 19 H -0.270 1.270 20 H -0.259 1.259 21 C -0.230 4.230 22 C 0.150 3.850 23 N -0.562 5.562 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.408 0.592 28 H 0.161 0.839 29 H 0.147 0.853 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.290 0.710 33 H 0.117 0.883 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 -11.031 1.880 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.360 5.360 3 C 0.145 3.855 4 C -0.256 4.256 5 C -0.056 4.056 6 C -0.161 4.161 7 C 0.015 3.985 8 C -0.288 4.288 9 C 0.078 3.922 10 F -0.144 7.144 11 C -0.250 4.250 12 C 0.104 3.896 13 C -0.518 4.518 14 H 0.107 0.893 15 C -0.182 4.182 16 N -0.447 5.447 17 Si 0.806 3.194 18 H -0.179 1.179 19 H -0.195 1.195 20 H -0.183 1.183 21 C -0.249 4.249 22 C -0.007 4.007 23 N -0.280 5.280 24 H 0.078 0.922 25 H 0.122 0.878 26 H 0.079 0.921 27 H 0.243 0.757 28 H 0.179 0.821 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.669 -11.581 1.730 15.841 hybrid contribution 0.604 1.309 -0.064 1.443 sum -10.065 -10.272 1.666 14.477 Atomic orbital electron populations 1.21833 0.76951 1.04674 1.01845 1.44389 1.06964 1.04290 1.80400 1.18800 0.88180 0.87892 0.90667 1.21547 1.01958 0.90639 1.11407 1.21653 0.92520 0.99280 0.92114 1.19565 0.94321 0.93215 1.09027 1.18128 0.92321 0.90909 0.97142 1.20519 0.99072 0.90204 1.18974 1.17742 0.90857 0.80083 1.03537 1.91326 1.82683 1.45867 1.94572 1.21254 0.91259 0.99829 1.12633 1.17600 0.94078 0.90418 0.87490 1.19894 0.91320 1.04213 1.36331 0.89254 1.26868 1.06036 0.93615 0.91655 1.69878 1.40921 1.11796 1.22087 0.85186 0.75488 0.79006 0.79702 1.17877 1.19458 1.18343 1.21306 0.92620 0.97449 1.13530 1.22611 0.99982 0.86120 0.92008 1.67154 1.07109 1.31678 1.22030 0.92157 0.87787 0.92123 0.75690 0.82138 0.83533 0.85252 0.87361 0.89889 0.86533 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 9.91 127.77 1.27 2.24 16 2 N -0.73 -13.81 5.88 -366.48 -2.16 -15.96 16 3 C 0.38 10.35 7.64 133.10 1.02 11.36 16 4 C -0.23 -5.85 9.31 22.47 0.21 -5.64 16 5 C -0.03 -0.92 9.52 22.64 0.22 -0.70 16 6 C -0.16 -5.73 5.89 -19.94 -0.12 -5.84 16 7 C 0.02 0.70 5.87 -20.10 -0.12 0.58 16 8 C -0.27 -11.91 9.42 22.72 0.21 -11.69 16 9 C 0.10 4.84 7.28 22.29 0.16 5.00 16 10 F -0.17 -7.91 17.26 44.97 0.78 -7.14 16 11 C -0.23 -12.47 8.66 22.81 0.20 -12.28 16 12 C 0.11 5.71 5.56 -21.32 -0.12 5.59 16 13 C -0.49 -25.62 9.05 23.46 0.21 -25.41 16 14 H 0.09 4.39 7.90 -2.91 -0.02 4.37 16 15 C 0.03 1.70 5.14 85.25 0.44 2.13 16 16 N -0.82 -43.08 10.96 21.82 0.24 -42.85 16 17 Si 0.99 37.38 29.59 68.60 2.03 39.41 16 18 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 19 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 21 C -0.23 -10.93 9.17 22.96 0.21 -10.72 16 22 C 0.15 5.26 10.59 84.91 0.90 6.16 16 23 N -0.56 -18.24 10.38 -192.42 -2.00 -20.23 16 24 H 0.06 0.62 7.92 -2.39 -0.02 0.60 16 25 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.61 7.92 -2.39 -0.02 0.60 16 27 H 0.41 7.00 8.95 -92.71 -0.83 6.17 16 28 H 0.16 2.89 6.68 -2.91 -0.02 2.87 16 29 H 0.15 3.96 6.30 -2.91 -0.02 3.94 16 30 H 0.13 4.91 6.24 -2.91 -0.02 4.89 16 31 H 0.11 6.21 6.18 -2.91 -0.02 6.20 16 32 H 0.29 13.81 8.30 -92.72 -0.77 13.04 16 33 H 0.12 5.07 6.21 -2.91 -0.02 5.05 16 34 H 0.16 5.40 6.20 -2.91 -0.02 5.38 16 Total: -1.00 -62.78 295.36 3.91 -58.87 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.33 Total: 27.12 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 4.69 Total: -39.23 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -3.91 Total: -79.04 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 0.78 Total: -7.14 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -62.78 3.91 -58.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242073460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.269 kcal (2) G-P(sol) polarization free energy of solvation -62.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds