Wall clock time and date at job start Mon Mar 30 2020 01:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37953 * 120.81092 * 2 1 4 4 C 1.39337 * 119.25693 * 179.97438 * 3 2 1 5 5 N 1.38746 * 119.54760 * 180.02562 * 4 3 2 6 6 N 1.32557 * 120.90766 * 359.74108 * 4 3 2 7 7 C 1.31683 * 121.77252 * 0.52939 * 6 4 3 8 8 C 1.39577 * 120.64162 * 359.47002 * 7 6 4 9 9 C 1.47846 * 120.48094 * 180.23241 * 8 7 6 10 10 C 1.40000 * 119.89456 * 65.00789 * 9 8 7 11 11 C 1.36206 * 120.13311 * 179.97438 * 10 9 8 12 12 C 1.40993 * 119.93014 * 359.97438 * 11 10 9 13 13 C 1.40993 * 120.09890 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00008 * 204.72686 * 13 12 11 15 15 C 1.39961 * 119.99601 * 24.72796 * 13 12 11 16 16 N 1.30826 * 120.00177 * 17.98862 * 15 13 12 17 17 Si 1.86798 * 119.99609 * 197.99248 * 15 13 12 18 18 H 1.48497 * 109.47291 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47111 * 119.99981 * 17 15 13 20 20 H 1.48498 * 109.47056 * 239.99582 * 17 15 13 21 21 C 1.40885 * 119.80466 * 0.02562 * 12 11 10 22 22 C 1.36442 * 119.86163 * 359.73832 * 21 12 11 23 23 F 1.35102 * 119.96450 * 180.27613 * 22 21 12 24 24 H 1.09003 * 109.46660 * 270.02752 * 1 2 3 25 25 H 1.09003 * 109.46769 * 30.01991 * 1 2 3 26 26 H 1.08999 * 109.47151 * 150.02667 * 1 2 3 27 27 H 1.07998 * 120.37106 * 0.02562 * 3 2 1 28 28 H 0.96999 * 119.99947 * 359.97438 * 5 4 3 29 29 H 0.96995 * 120.00012 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.68270 * 179.75113 * 7 6 4 31 31 H 1.07994 * 119.93453 * 359.97438 * 10 9 8 32 32 H 1.07997 * 120.02957 * 180.02562 * 11 10 9 33 33 H 0.97003 * 120.00301 * 180.02562 * 16 15 13 34 34 H 1.08004 * 120.07126 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.1848 0.0000 4 6 3.6065 1.1470 0.0005 5 7 4.3232 2.3351 0.0011 6 7 4.2563 -0.0083 0.0062 7 6 3.6205 -1.1615 0.0012 8 6 2.2254 -1.2046 0.0007 9 6 1.5151 -2.5013 0.0002 10 6 1.6293 -3.3598 1.1001 11 6 0.9766 -4.5553 1.1050 12 6 0.1841 -4.9287 0.0003 13 6 -0.4935 -6.1651 0.0019 14 1 -0.7574 -6.6374 -0.9327 15 6 -0.8239 -6.7804 1.2148 16 7 -0.8342 -6.0822 2.3211 17 14 -1.2503 -8.5987 1.2539 18 1 -1.1654 -9.1567 -0.1196 19 1 -0.2937 -9.3125 2.1376 20 1 -2.6299 -8.7725 1.7751 21 6 0.0712 -4.0626 -1.1051 22 6 0.7246 -2.8648 -1.0992 23 9 0.6133 -2.0302 -2.1558 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6931 2.1311 0.0004 28 1 3.8544 3.1843 0.0007 29 1 5.2930 2.3164 0.0011 30 1 4.1839 -2.0829 0.0020 31 1 2.2360 -3.0736 1.9464 32 1 1.0656 -5.2161 1.9546 33 1 -1.0628 -6.5087 3.1618 34 1 -0.5345 -4.3444 -1.9538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242084552.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:12 Heat of formation + Delta-G solvation = -18.701583 kcal Electronic energy + Delta-G solvation = -19891.991887 eV Core-core repulsion = 16702.443898 eV Total energy + Delta-G solvation = -3189.547989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.59010 -41.11150 -39.20673 -36.32701 -35.23308 -34.41912 -32.38643 -30.89673 -29.63822 -28.69056 -26.81609 -24.21902 -23.04239 -22.76390 -21.79099 -19.55574 -18.33956 -17.79584 -17.61824 -16.98971 -16.87955 -16.54208 -16.37178 -15.72787 -15.19942 -15.15373 -14.86718 -14.48994 -14.17762 -13.85815 -13.83930 -13.48854 -13.36145 -12.89586 -12.81028 -12.68104 -12.48487 -12.11322 -11.87860 -11.50002 -11.36476 -11.05163 -10.44877 -10.28316 -9.52519 -9.21511 -8.75384 -8.50582 -6.41836 0.34046 0.45278 0.89114 0.97027 1.41426 1.49864 1.56695 2.19690 2.60583 2.70841 2.99679 3.57758 3.72547 3.77944 3.97853 4.14649 4.32297 4.37854 4.43938 4.67450 4.75187 4.89238 4.92904 4.98110 5.06211 5.10530 5.18208 5.24553 5.52376 5.64861 5.73602 5.83123 6.01541 6.04189 6.23686 6.47206 6.58123 6.64012 6.81966 6.89199 7.42318 8.23012 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.036353 B = 0.004445 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.040066 B = 6298.227281 C = 6533.153658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.004 4.004 3 C -0.238 4.238 4 C 0.385 3.615 5 N -0.838 5.838 6 N -0.566 5.566 7 C 0.144 3.856 8 C -0.136 4.136 9 C -0.199 4.199 10 C -0.058 4.058 11 C -0.189 4.189 12 C 0.110 3.890 13 C -0.483 4.483 14 H 0.081 0.919 15 C 0.040 3.960 16 N -0.808 5.808 17 Si 0.985 3.015 18 H -0.258 1.258 19 H -0.262 1.262 20 H -0.264 1.264 21 C -0.284 4.284 22 C 0.132 3.868 23 F -0.160 7.160 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.157 0.843 28 H 0.420 0.580 29 H 0.407 0.593 30 H 0.156 0.844 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.294 0.706 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 10.168 -0.337 10.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.012 4.012 3 C -0.262 4.262 4 C 0.147 3.853 5 N -0.384 5.384 6 N -0.285 5.285 7 C -0.012 4.012 8 C -0.141 4.141 9 C -0.202 4.202 10 C -0.077 4.077 11 C -0.208 4.208 12 C 0.107 3.893 13 C -0.511 4.511 14 H 0.099 0.901 15 C -0.178 4.178 16 N -0.432 5.432 17 Si 0.805 3.195 18 H -0.182 1.182 19 H -0.186 1.186 20 H -0.189 1.189 21 C -0.304 4.304 22 C 0.113 3.887 23 F -0.139 7.139 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.174 0.826 28 H 0.252 0.748 29 H 0.237 0.763 30 H 0.173 0.827 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.856 10.211 -0.116 11.308 hybrid contribution -1.053 -0.508 -0.136 1.177 sum 3.804 9.703 -0.252 10.425 Atomic orbital electron populations 1.20841 0.90207 1.03181 1.02882 1.20417 0.96888 0.91933 0.91936 1.21307 0.92693 0.99189 1.13056 1.18617 0.88750 0.87318 0.90599 1.41987 1.09682 1.03660 1.83030 1.67103 1.40846 0.97802 1.22735 1.22641 0.90813 0.94842 0.92901 1.19327 0.94011 0.92490 1.08284 1.17896 1.08746 0.97266 0.96244 1.20506 0.98022 0.93297 0.95866 1.21010 1.01068 0.98059 1.00708 1.17702 0.89236 0.91924 0.90453 1.19882 1.32844 1.03970 0.94401 0.90086 1.26799 0.92290 1.04644 0.94025 1.69853 1.33174 1.39286 1.00862 0.85110 0.78792 0.75785 0.79812 1.18171 1.18598 1.18917 1.20719 1.10435 0.95885 1.03405 1.17282 0.98942 0.88409 0.84029 1.91333 1.95031 1.71540 1.55975 0.90342 0.89211 0.92885 0.82562 0.74823 0.76283 0.82663 0.86718 0.86996 0.89496 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.66 9.57 71.24 0.68 -2.97 16 2 C 0.00 -0.14 5.77 -19.44 -0.11 -0.25 16 3 C -0.24 -6.67 9.61 22.47 0.22 -6.45 16 4 C 0.39 10.90 7.74 133.15 1.03 11.93 16 5 N -0.84 -15.46 9.06 -55.38 -0.50 -15.96 16 6 N -0.57 -18.92 10.37 -192.16 -1.99 -20.92 16 7 C 0.14 5.23 10.90 85.04 0.93 6.16 16 8 C -0.14 -5.28 5.01 -19.92 -0.10 -5.38 16 9 C -0.20 -8.77 4.73 -19.83 -0.09 -8.86 16 10 C -0.06 -2.64 9.67 22.22 0.21 -2.43 16 11 C -0.19 -9.50 8.63 22.47 0.19 -9.31 16 12 C 0.11 5.75 5.57 -21.28 -0.12 5.63 16 13 C -0.48 -24.89 9.03 23.36 0.21 -24.68 16 14 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 15 C 0.04 1.90 5.13 85.26 0.44 2.34 16 16 N -0.81 -39.55 10.96 21.83 0.24 -39.31 16 17 Si 0.98 35.81 29.60 68.60 2.03 37.84 16 18 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 19 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 21 C -0.28 -14.21 9.70 22.50 0.22 -13.99 16 22 C 0.13 6.20 5.77 22.33 0.13 6.33 16 23 F -0.16 -7.14 15.54 44.97 0.70 -6.44 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 26 H 0.05 2.00 4.92 -2.39 -0.01 1.99 16 27 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.42 5.00 8.82 -92.71 -0.82 4.19 16 29 H 0.41 6.64 8.95 -92.71 -0.83 5.81 16 30 H 0.16 5.33 8.06 -2.91 -0.02 5.31 16 31 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 33 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 34 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -59.43 297.20 3.83 -55.61 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.48 Total: 31.12 kcal Atomic # 6 Polarization: -45.77 SS G_CDS: 3.83 Total: -41.94 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -2.26 Total: -76.19 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.70 Total: -6.44 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Total: -59.43 3.83 -55.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242084552.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.904 kcal (2) G-P(sol) polarization free energy of solvation -59.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds