Wall clock time and date at job start Mon Mar 30 2020 01:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37962 * 120.80576 * 2 1 4 4 C 1.39325 * 119.24880 * 180.29725 * 3 2 1 5 5 N 1.38742 * 119.54869 * 179.71902 * 4 3 2 6 6 N 1.32551 * 120.90568 * 359.74163 * 4 3 2 7 7 C 1.31687 * 121.76989 * 359.97438 * 6 4 3 8 8 C 1.39548 * 120.64740 * 0.02562 * 7 6 4 9 9 C 1.47889 * 120.47828 * 179.97438 * 8 7 6 10 10 C 1.40076 * 119.87067 * 310.00687 * 9 8 7 11 11 C 1.36162 * 120.17820 * 179.97438 * 10 9 8 12 12 C 1.40963 * 119.90656 * 0.02562 * 11 10 9 13 13 C 1.40914 * 120.13393 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00448 * 205.37338 * 13 12 11 15 15 C 1.39967 * 119.99783 * 25.37964 * 13 12 11 16 16 N 1.30838 * 120.00127 * 26.59319 * 15 13 12 17 17 Si 1.86800 * 119.99933 * 206.59613 * 15 13 12 18 18 H 1.48493 * 109.47038 * 179.97438 * 17 15 13 19 19 H 1.48504 * 109.47218 * 299.99913 * 17 15 13 20 20 H 1.48502 * 109.47117 * 59.99515 * 17 15 13 21 21 C 1.41195 * 119.73691 * 0.25157 * 12 11 10 22 22 F 1.35095 * 120.08908 * 179.74576 * 21 12 11 23 23 C 1.36524 * 119.81540 * 359.46360 * 21 12 11 24 24 H 1.08998 * 109.46960 * 270.22792 * 1 2 3 25 25 H 1.08998 * 109.47061 * 30.22762 * 1 2 3 26 26 H 1.09007 * 109.47302 * 150.22822 * 1 2 3 27 27 H 1.07995 * 120.37783 * 0.02562 * 3 2 1 28 28 H 0.97004 * 120.00383 * 180.02562 * 5 4 3 29 29 H 0.96999 * 120.00028 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.68065 * 180.02562 * 7 6 4 31 31 H 1.07995 * 119.91384 * 359.97438 * 10 9 8 32 32 H 1.07996 * 120.05018 * 179.97438 * 11 10 9 33 33 H 0.97004 * 120.00054 * 5.89393 * 16 15 13 34 34 H 1.07998 * 119.95143 * 180.24940 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.1850 0.0000 4 6 3.6063 1.1471 -0.0063 5 7 4.3230 2.3351 -0.0123 6 7 4.2560 -0.0083 -0.0071 7 6 3.6200 -1.1613 -0.0016 8 6 2.2252 -1.2044 0.0049 9 6 1.5147 -2.5014 0.0105 10 6 1.8602 -3.4901 -0.9196 11 6 1.2105 -4.6868 -0.9197 12 6 0.1872 -4.9310 0.0185 13 6 -0.4886 -6.1675 0.0224 14 1 -1.4922 -6.2332 0.4161 15 6 0.1407 -7.3105 -0.4841 16 7 1.4462 -7.3968 -0.4751 17 14 -0.8833 -8.7129 -1.1728 18 1 0.0153 -9.7976 -1.6427 19 1 -1.7810 -9.2376 -0.1124 20 1 -1.6985 -8.2179 -2.3111 21 6 -0.1620 -3.9296 0.9506 22 9 -1.1451 -4.1541 1.8496 23 6 0.5006 -2.7359 0.9446 24 1 -0.3633 0.0041 1.0276 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3634 -0.8921 -0.5103 27 1 1.6930 2.1312 0.0004 28 1 5.2929 2.3164 -0.0170 29 1 3.8543 3.1843 -0.0116 30 1 4.1833 -2.0828 -0.0021 31 1 2.6439 -3.3028 -1.6387 32 1 1.4782 -5.4474 -1.6381 33 1 1.9748 -6.7089 -0.0412 34 1 0.2381 -1.9699 1.6592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242084602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:15 Heat of formation + Delta-G solvation = -12.467554 kcal Electronic energy + Delta-G solvation = -19769.177845 eV Core-core repulsion = 16579.900183 eV Total energy + Delta-G solvation = -3189.277661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.36790 -39.93987 -37.67940 -35.15762 -33.83475 -33.21817 -30.46749 -29.41761 -28.06577 -27.47917 -24.99681 -22.90597 -21.68534 -20.98632 -20.36087 -18.16366 -17.19610 -16.68263 -16.31142 -15.26397 -14.85422 -14.72732 -14.34944 -14.15146 -14.02762 -13.97645 -13.63310 -12.93013 -12.85196 -12.56131 -12.28653 -12.07340 -11.91540 -11.40933 -11.29381 -10.94548 -10.79849 -10.48767 -10.36324 -10.02713 -9.72544 -9.19705 -9.11194 -9.05415 -8.00684 -7.75509 -7.41619 -7.15844 -4.58585 1.58496 1.69210 2.58465 2.63900 3.07936 3.16114 3.28648 3.70689 3.88303 4.19707 4.40446 4.90853 5.16620 5.20672 5.39732 5.48019 5.58429 5.78063 5.82185 5.96758 6.00223 6.08496 6.20925 6.32369 6.40843 6.66244 6.79670 6.87234 6.98247 7.20037 7.37703 7.45244 7.53684 7.62474 7.64834 7.74138 7.85905 8.05707 8.48590 8.54122 8.62244 9.81087 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033328 B = 0.004509 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.924255 B = 6208.343438 C = 6743.508514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.008 4.008 3 C -0.238 4.238 4 C 0.379 3.621 5 N -0.861 5.861 6 N -0.547 5.547 7 C 0.141 3.859 8 C -0.097 4.097 9 C -0.178 4.178 10 C -0.063 4.063 11 C -0.209 4.209 12 C 0.076 3.924 13 C -0.496 4.496 14 H 0.083 0.917 15 C 0.039 3.961 16 N -0.777 5.777 17 Si 1.067 2.933 18 H -0.271 1.271 19 H -0.273 1.273 20 H -0.272 1.272 21 C -0.036 4.036 22 F -0.163 7.163 23 C -0.084 4.084 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.399 0.601 29 H 0.402 0.598 30 H 0.154 0.846 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.302 0.698 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 11.086 -0.865 11.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.016 4.016 3 C -0.263 4.263 4 C 0.143 3.857 5 N -0.405 5.405 6 N -0.265 5.265 7 C -0.016 4.016 8 C -0.101 4.101 9 C -0.180 4.180 10 C -0.082 4.082 11 C -0.228 4.228 12 C 0.072 3.928 13 C -0.523 4.523 14 H 0.102 0.898 15 C -0.185 4.185 16 N -0.398 5.398 17 Si 0.889 3.111 18 H -0.196 1.196 19 H -0.198 1.198 20 H -0.197 1.197 21 C -0.056 4.056 22 F -0.143 7.143 23 C -0.104 4.104 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.140 0.860 28 H 0.227 0.773 29 H 0.231 0.769 30 H 0.171 0.829 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.307 9.556 -1.575 9.956 hybrid contribution -0.879 1.932 0.990 2.342 sum 1.428 11.489 -0.586 11.592 Atomic orbital electron populations 1.20858 0.90726 1.03071 1.02385 1.20157 0.96228 0.91664 0.93554 1.21021 0.92653 0.98615 1.13970 1.18265 0.88144 0.86694 0.92592 1.42003 1.09159 1.04278 1.85076 1.67043 1.40755 0.97462 1.21191 1.22604 0.91193 0.94129 0.93660 1.19461 0.93427 0.92979 1.04260 1.17450 1.03423 0.93585 1.03509 1.20437 0.97957 0.92978 0.96815 1.20637 1.02684 0.97843 1.01641 1.17719 0.92448 0.92759 0.89912 1.20611 1.03012 0.93587 1.35067 0.89841 1.27179 0.96477 1.01665 0.93209 1.70469 1.06690 1.35025 1.27634 0.83605 0.75417 0.74491 0.77564 1.19576 1.19835 1.19693 1.17307 0.95793 0.97722 0.94745 1.91282 1.60924 1.95519 1.66527 1.20290 0.96306 0.95101 0.98673 0.91065 0.92133 0.89979 0.86036 0.77281 0.76880 0.82927 0.88494 0.86911 0.88377 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 8.53 36.01 0.31 -1.37 16 2 C -0.01 -0.14 5.90 -103.98 -0.61 -0.75 16 3 C -0.24 -3.46 9.61 -39.28 -0.38 -3.84 16 4 C 0.38 5.65 7.74 -155.07 -1.20 4.45 16 5 N -0.86 -9.12 9.06 31.14 0.28 -8.84 16 6 N -0.55 -9.30 10.37 -12.10 -0.13 -9.43 16 7 C 0.14 2.50 10.68 -17.13 -0.18 2.32 16 8 C -0.10 -1.79 5.48 -104.71 -0.57 -2.36 16 9 C -0.18 -3.68 4.81 -104.65 -0.50 -4.18 16 10 C -0.06 -1.36 9.44 -39.64 -0.37 -1.73 16 11 C -0.21 -4.98 7.92 -39.30 -0.31 -5.30 16 12 C 0.08 1.93 5.30 -106.73 -0.57 1.36 16 13 C -0.50 -12.81 8.68 -37.92 -0.33 -13.14 16 14 H 0.08 2.15 7.80 -52.49 -0.41 1.75 16 15 C 0.04 0.94 4.90 -17.33 -0.08 0.85 16 16 N -0.78 -19.51 12.31 55.55 0.68 -18.82 16 17 Si 1.07 20.52 30.01 -169.99 -5.10 15.42 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 21 C -0.04 -0.88 7.26 -39.08 -0.28 -1.16 16 22 F -0.16 -4.05 16.70 2.25 0.04 -4.01 16 23 C -0.08 -1.84 7.89 -39.60 -0.31 -2.15 16 24 H 0.07 0.99 7.59 -51.93 -0.39 0.60 16 25 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.08 1.37 6.60 -51.92 -0.34 1.02 16 27 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.40 3.81 8.95 -40.82 -0.37 3.44 16 29 H 0.40 3.08 8.82 -40.82 -0.36 2.72 16 30 H 0.15 2.55 8.04 -52.49 -0.42 2.13 16 31 H 0.10 1.88 8.04 -52.49 -0.42 1.46 16 32 H 0.11 2.75 6.52 -52.49 -0.34 2.41 16 33 H 0.30 7.78 6.79 -40.82 -0.28 7.50 16 34 H 0.10 2.04 6.96 -52.49 -0.37 1.67 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -27.73 296.15 -8.50 -36.23 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -3.34 Total: 11.98 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -5.40 Total: -27.00 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.84 Total: -37.09 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.10 Total: 15.42 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.73 -8.50 -36.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242084602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.764 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds