Wall clock time and date at job start Mon Mar 30 2020 01:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37954 * 120.80502 * 2 1 4 4 C 1.39335 * 119.25518 * 179.97438 * 3 2 1 5 5 N 1.38750 * 119.54064 * 180.02562 * 4 3 2 6 6 N 1.32543 * 120.91637 * 359.97438 * 4 3 2 7 7 C 1.31693 * 121.77689 * 359.97438 * 6 4 3 8 8 C 1.39585 * 120.63337 * 359.74732 * 7 6 4 9 9 C 1.47784 * 120.47765 * 180.27898 * 8 7 6 10 10 C 1.39129 * 120.32678 * 65.23220 * 9 8 7 11 11 C 1.38330 * 119.95439 * 180.02562 * 10 9 8 12 12 F 1.35095 * 119.68894 * 179.97438 * 11 10 9 13 13 C 1.39249 * 120.61899 * 359.97438 * 11 10 9 14 14 C 1.36330 * 120.66709 * 359.97438 * 13 11 10 15 15 C 1.40800 * 120.01705 * 359.75808 * 14 13 11 16 16 C 1.40794 * 120.30391 * 180.26087 * 15 14 13 17 17 H 1.07993 * 120.00263 * 205.11837 * 16 15 14 18 18 C 1.40010 * 119.99735 * 25.11477 * 16 15 14 19 19 N 1.30826 * 120.00287 * 17.40298 * 18 16 15 20 20 Si 1.86800 * 119.99789 * 197.40219 * 18 16 15 21 21 H 1.48501 * 109.47256 * 60.00313 * 20 18 16 22 22 H 1.48510 * 109.47032 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47396 * 300.00096 * 20 18 16 24 24 H 1.09005 * 109.47118 * 90.00427 * 1 2 3 25 25 H 1.08998 * 109.47523 * 329.99491 * 1 2 3 26 26 H 1.09001 * 109.46883 * 209.99312 * 1 2 3 27 27 H 1.07993 * 120.37315 * 0.02562 * 3 2 1 28 28 H 0.96997 * 119.99818 * 0.02562 * 5 4 3 29 29 H 0.97003 * 120.00043 * 179.97438 * 5 4 3 30 30 H 1.07995 * 119.68225 * 180.02562 * 7 6 4 31 31 H 1.07997 * 120.02314 * 359.97307 * 10 9 8 32 32 H 1.08000 * 119.66350 * 179.97438 * 13 11 10 33 33 H 1.07996 * 119.99173 * 180.02562 * 14 13 11 34 34 H 0.96996 * 119.99935 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2135 1.1849 0.0000 4 6 3.6063 1.1472 0.0005 5 7 4.3228 2.3354 0.0011 6 7 4.2563 -0.0079 0.0016 7 6 3.6207 -1.1613 0.0026 8 6 2.2255 -1.2046 0.0080 9 6 1.5158 -2.5008 0.0153 10 6 1.6239 -3.3547 1.1085 11 6 0.9567 -4.5664 1.1070 12 9 1.0657 -5.3916 2.1710 13 6 0.1737 -4.9436 0.0190 14 6 0.0493 -4.1261 -1.0649 15 6 0.7119 -2.8840 -1.0900 16 6 0.5833 -2.0326 -2.2039 17 1 1.3567 -1.3120 -2.4251 18 6 -0.5474 -2.1202 -3.0250 19 7 -1.6238 -2.7260 -2.5937 20 14 -0.5191 -1.3719 -4.7364 21 1 0.5564 -2.0095 -5.5377 22 1 -1.8297 -1.5980 -5.3972 23 1 -0.2618 0.0870 -4.6346 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 0.8899 0.5139 26 1 -0.3633 -0.8901 0.5137 27 1 1.6928 2.1311 0.0004 28 1 3.8539 3.1845 0.0015 29 1 5.2926 2.3170 0.0018 30 1 4.1844 -2.0825 0.0038 31 1 2.2288 -3.0720 1.9572 32 1 -0.3401 -5.8934 0.0340 33 1 -0.5611 -4.4294 -1.9026 34 1 -2.4072 -2.7863 -3.1624 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242084979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:05 Heat of formation + Delta-G solvation = -17.590523 kcal Electronic energy + Delta-G solvation = -20330.978462 eV Core-core repulsion = 17141.478652 eV Total energy + Delta-G solvation = -3189.499810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.27153 -41.12056 -39.16447 -35.82901 -35.51269 -34.30626 -32.25437 -31.26961 -29.03794 -28.51573 -26.76203 -24.44164 -22.88248 -22.82025 -21.49971 -19.23302 -18.22296 -18.05207 -17.69127 -17.20693 -16.40996 -16.06073 -15.99761 -15.77240 -15.47701 -15.12544 -14.83727 -14.44441 -14.02534 -13.80558 -13.60051 -13.47339 -13.33802 -12.89265 -12.79923 -12.60555 -12.39559 -12.17917 -11.81706 -11.37499 -11.31646 -10.99278 -10.36004 -10.13302 -9.46384 -9.20085 -8.71391 -8.40613 -6.27084 0.43112 0.57182 0.84609 1.07833 1.40602 1.47771 1.51530 2.19018 2.64764 2.78172 3.10160 3.61997 3.82422 3.96063 4.11758 4.28777 4.32790 4.39195 4.52836 4.64978 4.84932 4.97045 5.02652 5.07221 5.15106 5.21622 5.31005 5.41333 5.55520 5.71104 5.81437 5.93494 5.98479 6.10050 6.29790 6.54620 6.61116 6.71494 6.89346 6.97724 7.49970 8.27117 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012010 B = 0.009369 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.753742 B = 2987.785649 C = 4795.032598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.010 3.990 3 C -0.243 4.243 4 C 0.382 3.618 5 N -0.840 5.840 6 N -0.566 5.566 7 C 0.135 3.865 8 C -0.119 4.119 9 C -0.144 4.144 10 C -0.102 4.102 11 C -0.063 4.063 12 F -0.173 7.173 13 C -0.129 4.129 14 C -0.158 4.158 15 C 0.102 3.898 16 C -0.446 4.446 17 H 0.072 0.928 18 C 0.048 3.952 19 N -0.804 5.804 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.267 1.267 23 H -0.260 1.260 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.151 0.849 28 H 0.418 0.582 29 H 0.406 0.594 30 H 0.153 0.847 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 8.651 0.464 9.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.002 3.998 3 C -0.268 4.268 4 C 0.145 3.855 5 N -0.386 5.386 6 N -0.285 5.285 7 C -0.020 4.020 8 C -0.124 4.124 9 C -0.146 4.146 10 C -0.121 4.121 11 C -0.083 4.083 12 F -0.153 7.153 13 C -0.148 4.148 14 C -0.177 4.177 15 C 0.100 3.900 16 C -0.474 4.474 17 H 0.090 0.910 18 C -0.170 4.170 19 N -0.429 5.429 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.191 1.191 23 H -0.184 1.184 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.169 0.831 28 H 0.250 0.750 29 H 0.236 0.764 30 H 0.170 0.830 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.182 8.571 0.443 9.547 hybrid contribution -0.910 -0.071 -0.467 1.025 sum 3.272 8.500 -0.025 9.108 Atomic orbital electron populations 1.20646 0.90244 1.01639 1.02739 1.20312 0.96730 0.91733 0.90981 1.21285 0.92757 0.99143 1.13598 1.18554 0.88642 0.87298 0.91044 1.41947 1.09551 1.03638 1.83458 1.67060 1.40814 0.97763 1.22905 1.22597 0.90922 0.94717 0.93800 1.19252 0.93538 0.92778 1.06860 1.18276 1.07287 0.94433 0.94593 1.20721 1.00001 0.92877 0.98528 1.17307 1.10640 0.92733 0.87574 1.91276 1.96067 1.72219 1.55689 1.20613 0.99833 1.00374 0.93995 1.20901 1.04269 0.94338 0.98240 1.17829 0.89474 0.91396 0.91346 1.19424 1.03900 1.16562 1.07532 0.90967 1.26558 0.93910 0.94193 1.02360 1.69818 1.02497 1.32759 1.37791 0.85523 0.78689 0.79734 0.77647 1.19016 1.19115 1.18415 0.90845 0.90325 0.93383 0.83102 0.74982 0.76390 0.83001 0.86781 0.86834 0.86494 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.57 8.60 71.24 0.61 -2.96 16 2 C 0.01 0.38 5.33 -19.44 -0.10 0.27 16 3 C -0.24 -7.64 9.61 22.47 0.22 -7.42 16 4 C 0.38 11.84 7.74 133.16 1.03 12.87 16 5 N -0.84 -17.53 9.06 -55.39 -0.50 -18.04 16 6 N -0.57 -20.22 10.37 -192.16 -1.99 -22.22 16 7 C 0.14 5.21 10.91 85.04 0.93 6.14 16 8 C -0.12 -4.92 4.39 -19.93 -0.09 -5.01 16 9 C -0.14 -6.55 4.27 -19.62 -0.08 -6.63 16 10 C -0.10 -4.59 9.71 22.51 0.22 -4.37 16 11 C -0.06 -2.91 7.30 22.53 0.16 -2.75 16 12 F -0.17 -7.74 17.26 44.97 0.78 -6.97 16 13 C -0.13 -6.00 9.94 22.07 0.22 -5.78 16 14 C -0.16 -7.77 8.63 22.45 0.19 -7.57 16 15 C 0.10 5.02 5.07 -21.11 -0.11 4.91 16 16 C -0.45 -21.29 6.16 23.32 0.14 -21.15 16 17 H 0.07 3.51 7.06 -2.91 -0.02 3.49 16 18 C 0.05 2.15 5.14 85.27 0.44 2.58 16 19 N -0.80 -37.40 10.97 21.84 0.24 -37.16 16 20 Si 0.96 35.09 29.59 68.60 2.03 37.12 16 21 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 23 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 24 H 0.07 2.94 6.96 -2.38 -0.02 2.93 16 25 H 0.08 2.34 8.10 -2.39 -0.02 2.32 16 26 H 0.05 2.02 7.03 -2.39 -0.02 2.01 16 27 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.42 6.06 8.82 -92.71 -0.82 5.25 16 29 H 0.41 7.50 8.95 -92.71 -0.83 6.67 16 30 H 0.15 5.53 8.06 -2.91 -0.02 5.51 16 31 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.12 5.88 6.18 -2.91 -0.02 5.86 16 34 H 0.29 12.37 8.30 -92.71 -0.77 11.61 16 Total: -1.00 -55.42 295.01 3.85 -51.57 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: -0.48 Total: 32.55 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.78 Total: -36.86 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -2.26 Total: -77.42 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.78 Total: -6.97 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Total: -55.42 3.85 -51.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242084979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.981 kcal (2) G-P(sol) polarization free energy of solvation -55.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds