Wall clock time and date at job start Mon Mar 30 2020 01:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50713 * 1 3 3 C 1.38108 * 120.79630 * 2 1 4 4 C 1.39185 * 119.22071 * 179.97438 * 3 2 1 5 5 N 1.38960 * 119.57371 * 179.97438 * 4 3 2 6 6 N 1.32457 * 120.85565 * 359.97399 * 4 3 2 7 7 C 1.31799 * 121.74603 * 359.77790 * 6 4 3 8 8 C 1.39204 * 120.68251 * 0.48777 * 7 6 4 9 9 C 1.48371 * 120.45208 * 179.77611 * 8 7 6 10 10 C 1.39594 * 120.01810 * 64.97031 * 9 8 7 11 11 C 1.38465 * 120.41719 * 180.25754 * 10 9 8 12 12 C 1.37659 * 120.45515 * 359.49085 * 11 10 9 13 13 C 1.40760 * 120.01812 * 0.25234 * 12 11 10 14 14 C 1.41316 * 120.20659 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00270 * 154.58148 * 14 13 12 16 16 C 1.39939 * 119.99964 * 334.57711 * 14 13 12 17 17 N 1.30844 * 119.99665 * 343.02790 * 16 14 13 18 18 Si 1.86802 * 119.99807 * 163.03062 * 16 14 13 19 19 H 1.48494 * 109.47051 * 90.00084 * 18 16 14 20 20 H 1.48502 * 109.46543 * 210.00158 * 18 16 14 21 21 H 1.48498 * 109.47082 * 329.99512 * 18 16 14 22 22 C 1.39077 * 120.01175 * 244.72167 * 9 8 7 23 23 F 1.35098 * 120.22575 * 359.97438 * 22 9 8 24 24 H 1.08999 * 109.46652 * 270.02030 * 1 2 3 25 25 H 1.08995 * 109.46806 * 30.01888 * 1 2 3 26 26 H 1.09000 * 109.46789 * 150.02301 * 1 2 3 27 27 H 1.08000 * 120.39225 * 0.02562 * 3 2 1 28 28 H 0.96999 * 119.99749 * 0.02562 * 5 4 3 29 29 H 0.97003 * 119.99954 * 179.97438 * 5 4 3 30 30 H 1.07998 * 119.65614 * 180.23701 * 7 6 4 31 31 H 1.07995 * 119.79243 * 0.02562 * 10 9 8 32 32 H 1.08005 * 119.77487 * 179.76731 * 11 10 9 33 33 H 1.08000 * 119.99229 * 180.28124 * 12 11 10 34 34 H 0.97008 * 119.99647 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2142 1.1863 0.0000 4 6 3.6055 1.1481 0.0005 5 7 4.3243 2.3373 0.0000 6 7 4.2534 -0.0073 0.0016 7 6 3.6149 -1.1603 0.0065 8 6 2.2235 -1.2018 0.0006 9 6 1.5100 -2.5028 0.0011 10 6 1.6179 -3.3579 1.0992 11 6 0.9599 -4.5762 1.1062 12 6 0.1825 -4.9556 0.0353 13 6 0.0564 -4.1054 -1.0794 14 6 -0.7410 -4.4907 -2.1807 15 1 -1.1748 -3.7384 -2.8228 16 6 -0.9686 -5.8470 -2.4394 17 7 -0.2012 -6.7549 -1.8926 18 14 -2.3677 -6.3612 -3.5653 19 1 -1.8763 -6.4320 -4.9648 20 1 -2.8728 -7.6944 -3.1498 21 1 -3.4661 -5.3659 -3.4760 22 6 0.7294 -2.8684 -1.0902 23 9 0.6169 -2.0424 -2.1533 24 1 -0.3632 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6937 2.1326 0.0004 28 1 3.8563 3.1869 -0.0004 29 1 5.2942 2.3179 0.0008 30 1 4.1771 -2.0824 0.0110 31 1 2.2213 -3.0691 1.9470 32 1 1.0536 -5.2315 1.9597 33 1 -0.3311 -5.9055 0.0507 34 1 -0.3592 -7.6951 -2.0717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242085485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:16 Heat of formation + Delta-G solvation = -2.922546 kcal Electronic energy + Delta-G solvation = -20085.081935 eV Core-core repulsion = 16896.218176 eV Total energy + Delta-G solvation = -3188.863759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.27450 -39.88170 -37.32110 -34.96181 -33.65770 -33.17567 -30.62548 -29.56600 -27.58688 -27.06954 -25.32265 -23.12156 -21.58650 -20.81644 -20.22624 -17.40960 -17.18649 -16.65626 -16.03716 -15.36399 -15.17504 -14.83955 -14.51608 -14.05110 -13.90756 -13.82334 -13.35615 -12.87363 -12.62067 -12.33074 -12.13479 -11.88393 -11.63645 -11.40490 -11.16744 -11.04247 -10.84635 -10.52779 -10.29402 -9.89077 -9.68588 -9.30410 -9.10929 -9.01471 -7.75267 -7.47134 -7.13359 -6.84416 -4.45820 1.62985 1.76332 2.64493 2.70976 3.03428 3.06600 3.13651 3.70397 3.87424 4.25887 4.49108 4.93198 5.22392 5.35424 5.43147 5.50631 5.64599 5.86633 5.94219 6.01798 6.10476 6.23486 6.33385 6.47085 6.56853 6.78195 6.87507 6.97503 7.07235 7.14426 7.43894 7.45761 7.57390 7.62977 7.88454 7.93180 8.03912 8.47488 8.53807 8.69206 8.78327 10.07853 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031318 B = 0.004996 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.834406 B = 5603.230827 C = 5977.888278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.015 3.985 3 C -0.243 4.243 4 C 0.390 3.610 5 N -0.860 5.860 6 N -0.550 5.550 7 C 0.157 3.843 8 C -0.126 4.126 9 C -0.050 4.050 10 C -0.202 4.202 11 C -0.111 4.111 12 C -0.143 4.143 13 C 0.086 3.914 14 C -0.455 4.455 15 H 0.082 0.918 16 C 0.077 3.923 17 N -0.790 5.790 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.012 4.012 23 F -0.158 7.158 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.403 0.597 29 H 0.399 0.601 30 H 0.156 0.844 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 9.631 3.679 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.007 3.993 3 C -0.267 4.267 4 C 0.154 3.846 5 N -0.404 5.404 6 N -0.268 5.268 7 C 0.001 3.999 8 C -0.130 4.130 9 C -0.051 4.051 10 C -0.222 4.222 11 C -0.129 4.129 12 C -0.162 4.162 13 C 0.083 3.917 14 C -0.484 4.484 15 H 0.100 0.900 16 C -0.141 4.141 17 N -0.415 5.415 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.032 4.032 23 F -0.137 7.137 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.142 0.858 28 H 0.232 0.768 29 H 0.228 0.772 30 H 0.173 0.827 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.074 9.374 3.629 10.512 hybrid contribution -1.174 0.112 -0.704 1.374 sum 1.900 9.486 2.925 10.107 Atomic orbital electron populations 1.20918 0.90480 1.03885 1.02507 1.20114 0.96447 0.91437 0.91304 1.21032 0.92646 0.98666 1.14403 1.18289 0.88160 0.86714 0.91473 1.42072 1.09183 1.04264 1.84893 1.67086 1.40586 0.97385 1.21770 1.22504 0.90928 0.94307 0.92184 1.19490 0.93905 0.93211 1.06413 1.18024 0.99388 0.92884 0.94845 1.20235 1.07977 0.96004 0.97949 1.20652 0.98694 0.95580 0.98012 1.21228 1.01893 1.01164 0.91949 1.17550 0.91070 0.89399 0.93691 1.19486 1.26517 0.92319 1.10068 0.89994 1.25891 0.95954 0.96355 0.95933 1.69811 1.32392 1.02594 1.36710 0.86257 0.81412 0.78595 0.80239 1.19357 1.19966 1.18325 1.17786 1.06371 0.93300 0.85737 1.91271 1.95347 1.71465 1.55618 0.90891 0.91833 0.89425 0.85783 0.76786 0.77217 0.82707 0.88502 0.88607 0.85718 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 9.57 36.01 0.34 -1.66 16 2 C 0.01 0.26 5.78 -104.04 -0.60 -0.34 16 3 C -0.24 -3.75 9.62 -39.28 -0.38 -4.13 16 4 C 0.39 6.05 7.74 -154.99 -1.20 4.85 16 5 N -0.86 -9.43 9.07 31.14 0.28 -9.14 16 6 N -0.55 -9.69 10.38 -12.17 -0.13 -9.82 16 7 C 0.16 2.93 10.89 -17.21 -0.19 2.74 16 8 C -0.13 -2.49 5.01 -104.74 -0.52 -3.01 16 9 C -0.05 -1.10 4.69 -104.91 -0.49 -1.59 16 10 C -0.20 -4.29 9.74 -38.99 -0.38 -4.67 16 11 C -0.11 -2.43 10.01 -39.71 -0.40 -2.83 16 12 C -0.14 -3.52 8.68 -38.84 -0.34 -3.85 16 13 C 0.09 2.24 5.57 -106.80 -0.59 1.65 16 14 C -0.45 -11.93 8.77 -37.78 -0.33 -12.26 16 15 H 0.08 2.13 7.74 -52.49 -0.41 1.72 16 16 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 17 N -0.79 -19.73 10.96 55.55 0.61 -19.12 16 18 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 22 C -0.01 -0.29 5.84 -38.29 -0.22 -0.51 16 23 F -0.16 -3.92 15.04 2.25 0.03 -3.89 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 26 H 0.09 1.70 4.94 -51.93 -0.26 1.44 16 27 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.40 3.22 8.82 -40.82 -0.36 2.86 16 29 H 0.40 3.91 8.95 -40.82 -0.37 3.55 16 30 H 0.16 2.69 8.06 -52.49 -0.42 2.27 16 31 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.13 3.14 6.18 -52.49 -0.32 2.82 16 34 H 0.28 6.39 8.30 -40.82 -0.34 6.06 16 LS Contribution 296.82 15.07 4.47 4.47 Total: -1.00 -28.39 296.82 -8.53 -36.92 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.38 Total: 11.12 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -5.39 Total: -23.83 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.77 Total: -38.08 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.03 Total: -3.89 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.39 -8.53 -36.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242085485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.000 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds