Wall clock time and date at job start Mon Mar 30 2020 01:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50713 * 1 3 3 C 1.38108 * 120.79630 * 2 1 4 4 C 1.39185 * 119.22071 * 179.97438 * 3 2 1 5 5 N 1.38960 * 119.57371 * 179.97438 * 4 3 2 6 6 N 1.32457 * 120.85565 * 359.97399 * 4 3 2 7 7 C 1.31799 * 121.74603 * 359.77790 * 6 4 3 8 8 C 1.39204 * 120.68251 * 0.48777 * 7 6 4 9 9 C 1.48371 * 120.45208 * 179.77611 * 8 7 6 10 10 C 1.39594 * 120.01810 * 64.97031 * 9 8 7 11 11 C 1.38465 * 120.41719 * 180.25754 * 10 9 8 12 12 C 1.37659 * 120.45515 * 359.49085 * 11 10 9 13 13 C 1.40760 * 120.01812 * 0.25234 * 12 11 10 14 14 C 1.41316 * 120.20659 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00270 * 154.58148 * 14 13 12 16 16 C 1.39939 * 119.99964 * 334.57711 * 14 13 12 17 17 N 1.30844 * 119.99665 * 343.02790 * 16 14 13 18 18 Si 1.86802 * 119.99807 * 163.03062 * 16 14 13 19 19 H 1.48494 * 109.47051 * 90.00084 * 18 16 14 20 20 H 1.48502 * 109.46543 * 210.00158 * 18 16 14 21 21 H 1.48498 * 109.47082 * 329.99512 * 18 16 14 22 22 C 1.39077 * 120.01175 * 244.72167 * 9 8 7 23 23 F 1.35098 * 120.22575 * 359.97438 * 22 9 8 24 24 H 1.08999 * 109.46652 * 270.02030 * 1 2 3 25 25 H 1.08995 * 109.46806 * 30.01888 * 1 2 3 26 26 H 1.09000 * 109.46789 * 150.02301 * 1 2 3 27 27 H 1.08000 * 120.39225 * 0.02562 * 3 2 1 28 28 H 0.96999 * 119.99749 * 0.02562 * 5 4 3 29 29 H 0.97003 * 119.99954 * 179.97438 * 5 4 3 30 30 H 1.07998 * 119.65614 * 180.23701 * 7 6 4 31 31 H 1.07995 * 119.79243 * 0.02562 * 10 9 8 32 32 H 1.08005 * 119.77487 * 179.76731 * 11 10 9 33 33 H 1.08000 * 119.99229 * 180.28124 * 12 11 10 34 34 H 0.97008 * 119.99647 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2142 1.1863 0.0000 4 6 3.6055 1.1481 0.0005 5 7 4.3243 2.3373 0.0000 6 7 4.2534 -0.0073 0.0016 7 6 3.6149 -1.1603 0.0065 8 6 2.2235 -1.2018 0.0006 9 6 1.5100 -2.5028 0.0011 10 6 1.6179 -3.3579 1.0992 11 6 0.9599 -4.5762 1.1062 12 6 0.1825 -4.9556 0.0353 13 6 0.0564 -4.1054 -1.0794 14 6 -0.7410 -4.4907 -2.1807 15 1 -1.1748 -3.7384 -2.8228 16 6 -0.9686 -5.8470 -2.4394 17 7 -0.2012 -6.7549 -1.8926 18 14 -2.3677 -6.3612 -3.5653 19 1 -1.8763 -6.4320 -4.9648 20 1 -2.8728 -7.6944 -3.1498 21 1 -3.4661 -5.3659 -3.4760 22 6 0.7294 -2.8684 -1.0902 23 9 0.6169 -2.0424 -2.1533 24 1 -0.3632 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6937 2.1326 0.0004 28 1 3.8563 3.1869 -0.0004 29 1 5.2942 2.3179 0.0008 30 1 4.1771 -2.0824 0.0110 31 1 2.2213 -3.0691 1.9470 32 1 1.0536 -5.2315 1.9597 33 1 -0.3311 -5.9055 0.0507 34 1 -0.3592 -7.6951 -2.0717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242085485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:16 Heat of formation + Delta-G solvation = -18.547730 kcal Electronic energy + Delta-G solvation = -20085.759494 eV Core-core repulsion = 16896.218176 eV Total energy + Delta-G solvation = -3189.541317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.17457 -41.19780 -39.06565 -36.35077 -35.30700 -34.46351 -32.21259 -31.34840 -28.89315 -28.55074 -27.17797 -24.54596 -23.00752 -22.60834 -21.79597 -19.18715 -18.37691 -17.89319 -17.83388 -17.11955 -16.77368 -16.28903 -16.15571 -15.67306 -15.28138 -15.20587 -14.86982 -14.60522 -13.89341 -13.84293 -13.69082 -13.51188 -13.35834 -13.09305 -12.79156 -12.58815 -12.52222 -12.14813 -11.73683 -11.55202 -11.37982 -11.09206 -10.50540 -10.32979 -9.41748 -9.20473 -8.71188 -8.52534 -6.39690 0.28530 0.39899 0.85655 0.97195 1.37848 1.47214 1.53426 2.19919 2.65250 2.65871 2.94570 3.52627 3.66492 3.87829 3.97955 4.10774 4.27302 4.38726 4.54273 4.62210 4.74195 4.79898 4.85482 4.97596 5.02518 5.13061 5.23585 5.30123 5.52927 5.62254 5.74181 5.78611 6.04755 6.07375 6.20089 6.43101 6.57429 6.60653 6.80226 6.91053 7.37740 8.28185 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031318 B = 0.004996 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.834406 B = 5603.230827 C = 5977.888278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.005 3.995 3 C -0.237 4.237 4 C 0.391 3.609 5 N -0.837 5.837 6 N -0.565 5.565 7 C 0.153 3.847 8 C -0.160 4.160 9 C -0.038 4.038 10 C -0.197 4.197 11 C -0.106 4.106 12 C -0.164 4.164 13 C 0.058 3.942 14 C -0.496 4.496 15 H 0.068 0.932 16 C 0.041 3.959 17 N -0.818 5.818 18 Si 0.981 3.019 19 H -0.265 1.265 20 H -0.259 1.259 21 H -0.260 1.260 22 C -0.035 4.035 23 F -0.166 7.166 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.160 0.840 28 H 0.420 0.580 29 H 0.408 0.592 30 H 0.157 0.843 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 11.359 4.408 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.003 4.003 3 C -0.262 4.262 4 C 0.152 3.848 5 N -0.382 5.382 6 N -0.284 5.284 7 C -0.003 4.003 8 C -0.165 4.165 9 C -0.040 4.040 10 C -0.216 4.216 11 C -0.125 4.125 12 C -0.184 4.184 13 C 0.055 3.945 14 C -0.525 4.525 15 H 0.087 0.913 16 C -0.175 4.175 17 N -0.444 5.444 18 Si 0.801 3.199 19 H -0.190 1.190 20 H -0.183 1.183 21 H -0.184 1.184 22 C -0.055 4.055 23 F -0.146 7.146 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.178 0.822 28 H 0.253 0.747 29 H 0.238 0.762 30 H 0.175 0.825 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.543 11.150 4.374 12.491 hybrid contribution -1.158 -0.227 -0.841 1.449 sum 2.385 10.924 3.533 11.726 Atomic orbital electron populations 1.20900 0.90007 1.03413 1.03230 1.20319 0.97022 0.91707 0.91259 1.21323 0.92694 0.99198 1.12979 1.18622 0.88770 0.87331 0.90039 1.42053 1.09723 1.03614 1.82852 1.67134 1.40710 0.97733 1.22844 1.22509 0.90516 0.95080 0.92229 1.19446 0.94475 0.92765 1.09856 1.18261 0.97913 0.94026 0.93760 1.20609 1.07240 0.95383 0.98361 1.20970 0.97311 0.96203 0.97970 1.21200 1.03445 1.00904 0.92809 1.17899 0.91764 0.90517 0.94347 1.19631 1.28529 0.93282 1.11033 0.91336 1.26667 0.97937 0.95639 0.97267 1.69839 1.33529 1.03188 1.37817 0.85219 0.77945 0.78581 0.78108 1.18960 1.18312 1.18430 1.18036 1.07663 0.93260 0.86582 1.91226 1.95544 1.71611 1.56179 0.89538 0.89274 0.92872 0.82248 0.74718 0.76193 0.82537 0.85745 0.85630 0.86926 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.81 9.57 71.24 0.68 -3.13 16 2 C 0.00 0.15 5.78 -19.48 -0.11 0.04 16 3 C -0.24 -6.60 9.62 22.47 0.22 -6.38 16 4 C 0.39 10.96 7.74 133.07 1.03 11.99 16 5 N -0.84 -15.16 9.07 -55.40 -0.50 -15.66 16 6 N -0.57 -18.85 10.38 -192.40 -2.00 -20.85 16 7 C 0.15 5.57 10.89 84.93 0.93 6.49 16 8 C -0.16 -6.27 5.01 -19.94 -0.10 -6.37 16 9 C -0.04 -1.69 4.69 -20.05 -0.09 -1.79 16 10 C -0.20 -8.22 9.74 22.65 0.22 -8.00 16 11 C -0.11 -4.64 10.01 22.19 0.22 -4.42 16 12 C -0.16 -8.33 8.68 22.75 0.20 -8.14 16 13 C 0.06 3.14 5.57 -21.27 -0.12 3.02 16 14 C -0.50 -27.35 8.77 23.44 0.21 -27.14 16 15 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 16 C 0.04 2.05 5.15 85.25 0.44 2.49 16 17 N -0.82 -41.97 10.96 21.83 0.24 -41.73 16 18 Si 0.98 38.27 29.59 68.60 2.03 40.30 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 C -0.04 -1.80 5.84 23.10 0.13 -1.67 16 23 F -0.17 -8.65 15.04 44.97 0.68 -7.97 16 24 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.09 2.32 8.10 -2.39 -0.02 2.30 16 26 H 0.05 2.10 4.94 -2.39 -0.01 2.08 16 27 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 28 H 0.42 4.85 8.82 -92.71 -0.82 4.03 16 29 H 0.41 6.52 8.95 -92.71 -0.83 5.69 16 30 H 0.16 5.41 8.06 -2.91 -0.02 5.39 16 31 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 33 H 0.11 5.90 6.18 -2.91 -0.02 5.88 16 34 H 0.29 13.40 8.30 -92.70 -0.77 12.63 16 Total: -1.00 -63.62 296.82 3.81 -59.81 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -0.48 Total: 29.10 kcal Atomic # 6 Polarization: -46.84 SS G_CDS: 3.85 Total: -42.99 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -2.26 Total: -78.25 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 0.68 Total: -7.97 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -63.62 3.81 -59.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242085485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.264 kcal (2) G-P(sol) polarization free energy of solvation -63.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds