Wall clock time and date at job start Mon Mar 30 2020 01:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38099 * 120.80384 * 2 1 4 4 C 1.39194 * 119.22402 * 180.27558 * 3 2 1 5 5 N 1.38931 * 119.57349 * 179.72297 * 4 3 2 6 6 N 1.32457 * 120.85177 * 359.75050 * 4 3 2 7 7 C 1.31787 * 121.75136 * 359.97337 * 6 4 3 8 8 C 1.39205 * 120.68530 * 0.02562 * 7 6 4 9 9 C 1.48371 * 120.45921 * 179.97438 * 8 7 6 10 10 C 1.39837 * 119.96735 * 130.25219 * 9 8 7 11 11 C 1.38231 * 120.41616 * 180.25896 * 10 9 8 12 12 C 1.38067 * 120.35162 * 359.48891 * 11 10 9 13 13 F 1.35100 * 120.04128 * 180.27827 * 12 11 10 14 14 C 1.41041 * 119.91614 * 0.25312 * 12 11 10 15 15 C 1.41318 * 120.20553 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99463 * 334.63574 * 15 14 12 17 17 C 1.39912 * 120.00498 * 154.63541 * 15 14 12 18 18 N 1.30862 * 119.99895 * 342.95375 * 17 15 14 19 19 Si 1.86799 * 120.00279 * 162.96074 * 17 15 14 20 20 H 1.48498 * 109.47292 * 59.99806 * 19 17 15 21 21 H 1.48503 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46887 * 299.99616 * 19 17 15 23 23 C 1.38673 * 119.96261 * 309.99964 * 9 8 7 24 24 H 1.09001 * 109.47078 * 270.24778 * 1 2 3 25 25 H 1.09005 * 109.47019 * 30.24018 * 1 2 3 26 26 H 1.08996 * 109.47952 * 150.24171 * 1 2 3 27 27 H 1.08002 * 120.38632 * 359.97438 * 3 2 1 28 28 H 0.97007 * 120.00335 * 180.02562 * 5 4 3 29 29 H 0.97008 * 120.00278 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.66166 * 179.97438 * 7 6 4 31 31 H 1.07999 * 119.79102 * 359.97438 * 10 9 8 32 32 H 1.08006 * 119.82215 * 179.76203 * 11 10 9 33 33 H 0.96993 * 119.99862 * 179.97438 * 18 17 15 34 34 H 1.08004 * 120.17489 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2142 1.1862 0.0000 4 6 3.6056 1.1478 -0.0058 5 7 4.3243 2.3368 -0.0117 6 7 4.2533 -0.0076 -0.0064 7 6 3.6148 -1.1605 -0.0010 8 6 2.2234 -1.2020 0.0050 9 6 1.5098 -2.5028 0.0105 10 6 0.4915 -2.7370 0.9399 11 6 -0.1758 -3.9474 0.9568 12 6 0.1486 -4.9357 0.0488 13 9 -0.5115 -6.1143 0.0673 14 6 1.1696 -4.7130 -0.8984 15 6 1.5063 -5.7200 -1.8309 16 1 1.3143 -6.7571 -1.5984 17 6 2.0882 -5.3736 -3.0552 18 7 2.0206 -4.1398 -3.4859 19 14 2.9615 -6.6723 -4.0750 20 1 2.0046 -7.7525 -4.4255 21 1 3.4868 -6.0542 -5.3189 22 1 4.0868 -7.2428 -3.2916 23 6 1.8498 -3.4832 -0.9094 24 1 -0.3633 0.0044 1.0277 25 1 -0.3633 0.8879 -0.5176 26 1 -0.3635 -0.8921 -0.5100 27 1 1.6937 2.1325 -0.0004 28 1 5.2942 2.3173 -0.0162 29 1 3.8563 3.1865 -0.0114 30 1 4.1769 -2.0827 -0.0021 31 1 0.2279 -1.9689 1.6520 32 1 -0.9581 -4.1194 1.6813 33 1 2.4243 -3.8995 -4.3345 34 1 2.6329 -3.3025 -1.6309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242089736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:07 Heat of formation + Delta-G solvation = -5.871043 kcal Electronic energy + Delta-G solvation = -19935.936882 eV Core-core repulsion = 16746.945267 eV Total energy + Delta-G solvation = -3188.991615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.23609 -39.91130 -37.40055 -34.82586 -33.72350 -33.12587 -30.52818 -29.81077 -27.60859 -26.88188 -25.35313 -23.02246 -21.48582 -21.21450 -19.97429 -17.41471 -17.11045 -16.62460 -16.07259 -15.45952 -15.07859 -14.72801 -14.50284 -13.99043 -13.92232 -13.78766 -13.27172 -12.81456 -12.62766 -12.34919 -12.13723 -11.96482 -11.74133 -11.54928 -11.22207 -11.03538 -10.80515 -10.50972 -10.26991 -9.99772 -9.58160 -9.29357 -9.06505 -8.98937 -7.80877 -7.62149 -6.96718 -6.80216 -4.45889 1.64865 1.74997 2.66957 2.78048 3.04195 3.06863 3.14680 3.74688 3.87954 4.29280 4.50772 4.96943 5.25133 5.38087 5.46786 5.54637 5.65765 5.86237 5.91358 6.02669 6.07961 6.15864 6.37153 6.42406 6.51533 6.83332 6.86248 6.97254 7.06825 7.16282 7.42624 7.49910 7.54646 7.66603 7.85609 7.91999 8.03371 8.45096 8.59651 8.68754 8.77123 10.07505 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.006154 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.768777 B = 4548.469209 C = 5703.831065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.005 3.995 3 C -0.242 4.242 4 C 0.386 3.614 5 N -0.861 5.861 6 N -0.549 5.549 7 C 0.155 3.845 8 C -0.119 4.119 9 C -0.039 4.039 10 C -0.202 4.202 11 C -0.123 4.123 12 C -0.028 4.028 13 F -0.164 7.164 14 C 0.086 3.914 15 C -0.454 4.454 16 H 0.083 0.917 17 C 0.077 3.923 18 N -0.788 5.788 19 Si 0.912 3.088 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.125 4.125 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.399 0.601 29 H 0.403 0.597 30 H 0.156 0.844 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.284 0.716 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 9.672 3.549 10.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.003 4.003 3 C -0.267 4.267 4 C 0.150 3.850 5 N -0.405 5.405 6 N -0.266 5.266 7 C -0.002 4.002 8 C -0.123 4.123 9 C -0.041 4.041 10 C -0.222 4.222 11 C -0.142 4.142 12 C -0.049 4.049 13 F -0.143 7.143 14 C 0.083 3.917 15 C -0.483 4.483 16 H 0.101 0.899 17 C -0.142 4.142 18 N -0.412 5.412 19 Si 0.736 3.264 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.145 4.145 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.141 0.859 28 H 0.228 0.772 29 H 0.231 0.769 30 H 0.173 0.827 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.462 9.752 3.321 10.593 hybrid contribution -0.460 -0.315 -0.564 0.793 sum 2.002 9.437 2.758 10.034 Atomic orbital electron populations 1.20886 0.90531 1.03310 1.02379 1.20086 0.96366 0.91474 0.92398 1.21018 0.92659 0.98623 1.14381 1.18280 0.88164 0.86718 0.91814 1.42061 1.09172 1.04260 1.85001 1.67074 1.40693 0.97413 1.21462 1.22543 0.91116 0.94274 0.92220 1.19613 0.93827 0.93404 1.05446 1.18240 0.96870 0.91660 0.97280 1.20185 1.01912 0.97033 1.03021 1.20402 1.00948 0.93960 0.98921 1.17929 0.98797 0.83192 1.04945 1.91269 1.80114 1.46364 1.96578 1.17532 0.89329 0.93699 0.91176 1.19474 1.34684 0.94912 0.99183 0.89922 1.25901 0.94064 0.96288 0.97955 1.69800 1.33095 1.19042 1.19289 0.86296 0.80380 0.81092 0.78662 1.18854 1.20209 1.18608 1.21264 1.01364 0.92852 0.98978 0.90919 0.92166 0.89665 0.85928 0.77248 0.76859 0.82696 0.88351 0.88080 0.90505 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 8.52 36.01 0.31 -1.41 16 2 C 0.00 0.08 5.90 -104.04 -0.61 -0.54 16 3 C -0.24 -3.65 9.62 -39.28 -0.38 -4.03 16 4 C 0.39 6.00 7.74 -155.02 -1.20 4.80 16 5 N -0.86 -9.53 9.07 31.13 0.28 -9.25 16 6 N -0.55 -9.80 10.38 -12.17 -0.13 -9.92 16 7 C 0.16 2.93 10.67 -17.21 -0.18 2.75 16 8 C -0.12 -2.31 5.48 -104.73 -0.57 -2.88 16 9 C -0.04 -0.86 4.78 -104.97 -0.50 -1.36 16 10 C -0.20 -4.20 7.98 -38.99 -0.31 -4.51 16 11 C -0.12 -2.71 9.99 -39.65 -0.40 -3.11 16 12 C -0.03 -0.71 7.31 -38.58 -0.28 -0.99 16 13 F -0.16 -4.11 16.71 2.25 0.04 -4.08 16 14 C 0.09 2.24 5.57 -106.80 -0.59 1.65 16 15 C -0.45 -11.95 8.77 -37.79 -0.33 -12.28 16 16 H 0.08 2.16 7.74 -52.48 -0.41 1.75 16 17 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 18 N -0.79 -19.78 10.97 55.55 0.61 -19.18 16 19 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 C -0.13 -3.07 8.14 -38.56 -0.31 -3.38 16 24 H 0.07 0.98 7.58 -51.93 -0.39 0.59 16 25 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.08 1.48 6.58 -51.93 -0.34 1.14 16 27 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.40 4.00 8.95 -40.82 -0.37 3.63 16 29 H 0.40 3.24 8.82 -40.82 -0.36 2.88 16 30 H 0.16 2.82 8.04 -52.49 -0.42 2.40 16 31 H 0.10 1.81 6.93 -52.49 -0.36 1.45 16 32 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 34 H 0.13 3.25 6.17 -52.48 -0.32 2.93 16 LS Contribution 296.96 15.07 4.48 4.48 Total: -1.00 -28.33 296.96 -8.59 -36.92 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -3.38 Total: 11.07 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -5.46 Total: -23.50 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.77 Total: -38.34 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.08 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.33 -8.59 -36.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242089736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.048 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds