Wall clock time and date at job start Mon Mar 30 2020 01:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38099 * 120.80384 * 2 1 4 4 C 1.39194 * 119.22402 * 180.27558 * 3 2 1 5 5 N 1.38931 * 119.57349 * 179.72297 * 4 3 2 6 6 N 1.32457 * 120.85177 * 359.75050 * 4 3 2 7 7 C 1.31787 * 121.75136 * 359.97337 * 6 4 3 8 8 C 1.39205 * 120.68530 * 0.02562 * 7 6 4 9 9 C 1.48371 * 120.45921 * 179.97438 * 8 7 6 10 10 C 1.39837 * 119.96735 * 130.25219 * 9 8 7 11 11 C 1.38231 * 120.41616 * 180.25896 * 10 9 8 12 12 C 1.38067 * 120.35162 * 359.48891 * 11 10 9 13 13 F 1.35100 * 120.04128 * 180.27827 * 12 11 10 14 14 C 1.41041 * 119.91614 * 0.25312 * 12 11 10 15 15 C 1.41318 * 120.20553 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99463 * 334.63574 * 15 14 12 17 17 C 1.39912 * 120.00498 * 154.63541 * 15 14 12 18 18 N 1.30862 * 119.99895 * 342.95375 * 17 15 14 19 19 Si 1.86799 * 120.00279 * 162.96074 * 17 15 14 20 20 H 1.48498 * 109.47292 * 59.99806 * 19 17 15 21 21 H 1.48503 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46887 * 299.99616 * 19 17 15 23 23 C 1.38673 * 119.96261 * 309.99964 * 9 8 7 24 24 H 1.09001 * 109.47078 * 270.24778 * 1 2 3 25 25 H 1.09005 * 109.47019 * 30.24018 * 1 2 3 26 26 H 1.08996 * 109.47952 * 150.24171 * 1 2 3 27 27 H 1.08002 * 120.38632 * 359.97438 * 3 2 1 28 28 H 0.97007 * 120.00335 * 180.02562 * 5 4 3 29 29 H 0.97008 * 120.00278 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.66166 * 179.97438 * 7 6 4 31 31 H 1.07999 * 119.79102 * 359.97438 * 10 9 8 32 32 H 1.08006 * 119.82215 * 179.76203 * 11 10 9 33 33 H 0.96993 * 119.99862 * 179.97438 * 18 17 15 34 34 H 1.08004 * 120.17489 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2142 1.1862 0.0000 4 6 3.6056 1.1478 -0.0058 5 7 4.3243 2.3368 -0.0117 6 7 4.2533 -0.0076 -0.0064 7 6 3.6148 -1.1605 -0.0010 8 6 2.2234 -1.2020 0.0050 9 6 1.5098 -2.5028 0.0105 10 6 0.4915 -2.7370 0.9399 11 6 -0.1758 -3.9474 0.9568 12 6 0.1486 -4.9357 0.0488 13 9 -0.5115 -6.1143 0.0673 14 6 1.1696 -4.7130 -0.8984 15 6 1.5063 -5.7200 -1.8309 16 1 1.3143 -6.7571 -1.5984 17 6 2.0882 -5.3736 -3.0552 18 7 2.0206 -4.1398 -3.4859 19 14 2.9615 -6.6723 -4.0750 20 1 2.0046 -7.7525 -4.4255 21 1 3.4868 -6.0542 -5.3189 22 1 4.0868 -7.2428 -3.2916 23 6 1.8498 -3.4832 -0.9094 24 1 -0.3633 0.0044 1.0277 25 1 -0.3633 0.8879 -0.5176 26 1 -0.3635 -0.8921 -0.5100 27 1 1.6937 2.1325 -0.0004 28 1 5.2942 2.3173 -0.0162 29 1 3.8563 3.1865 -0.0114 30 1 4.1769 -2.0827 -0.0021 31 1 0.2279 -1.9689 1.6520 32 1 -0.9581 -4.1194 1.6813 33 1 2.4243 -3.8995 -4.3345 34 1 2.6329 -3.3025 -1.6309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242089736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:07 Heat of formation + Delta-G solvation = -21.586938 kcal Electronic energy + Delta-G solvation = -19936.618374 eV Core-core repulsion = 16746.945267 eV Total energy + Delta-G solvation = -3189.673107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.17110 -41.23937 -39.11103 -36.22904 -35.35907 -34.42789 -32.05741 -31.63270 -28.85891 -28.35569 -27.20268 -24.45950 -23.11565 -22.72722 -21.59007 -19.21612 -18.31227 -17.93528 -17.79588 -17.18241 -16.67887 -16.27624 -15.98431 -15.81076 -15.25467 -15.09771 -14.89335 -14.41112 -14.09690 -13.73867 -13.67803 -13.50536 -13.38520 -13.16446 -12.88976 -12.71498 -12.34690 -12.13799 -11.75010 -11.61900 -11.31045 -11.08490 -10.42293 -10.28221 -9.47966 -9.32015 -8.70997 -8.37070 -6.41074 0.22884 0.42627 0.92571 1.03470 1.36282 1.47217 1.51126 2.18372 2.62836 2.70049 3.01095 3.53171 3.72206 3.94285 4.06401 4.09931 4.30795 4.36326 4.46694 4.68491 4.75370 4.87080 4.91360 5.01386 5.03608 5.17203 5.24478 5.30985 5.48805 5.65649 5.74361 5.79775 6.03259 6.07596 6.18697 6.47360 6.54168 6.64499 6.78826 6.88971 7.42344 8.25876 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.006154 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.768777 B = 4548.469209 C = 5703.831065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.002 3.998 3 C -0.235 4.235 4 C 0.386 3.614 5 N -0.839 5.839 6 N -0.569 5.569 7 C 0.145 3.855 8 C -0.153 4.153 9 C -0.027 4.027 10 C -0.187 4.187 11 C -0.119 4.119 12 C -0.062 4.062 13 F -0.172 7.172 14 C 0.057 3.943 15 C -0.496 4.496 16 H 0.070 0.930 17 C 0.041 3.959 18 N -0.816 5.816 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.263 1.263 22 H -0.259 1.259 23 C -0.144 4.144 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.162 0.838 28 H 0.407 0.593 29 H 0.420 0.580 30 H 0.145 0.855 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.290 0.710 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 12.462 4.120 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.006 4.006 3 C -0.259 4.259 4 C 0.148 3.852 5 N -0.384 5.384 6 N -0.288 5.288 7 C -0.011 4.011 8 C -0.158 4.158 9 C -0.028 4.028 10 C -0.207 4.207 11 C -0.138 4.138 12 C -0.083 4.083 13 F -0.151 7.151 14 C 0.054 3.946 15 C -0.525 4.525 16 H 0.088 0.912 17 C -0.175 4.175 18 N -0.441 5.441 19 Si 0.800 3.200 20 H -0.186 1.186 21 H -0.187 1.187 22 H -0.183 1.183 23 C -0.164 4.164 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.180 0.820 28 H 0.236 0.764 29 H 0.253 0.747 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.101 0.899 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.420 12.593 3.906 13.405 hybrid contribution -0.430 -0.919 -0.630 1.194 sum 1.990 11.674 3.276 12.287 Atomic orbital electron populations 1.20907 0.89036 1.03279 1.03640 1.20358 0.97509 0.91155 0.91567 1.21355 0.92442 0.99451 1.12695 1.18663 0.89040 0.87157 0.90378 1.42048 1.09673 1.03671 1.83027 1.67080 1.41054 0.97842 1.22800 1.22420 0.91124 0.94701 0.92821 1.19537 0.94105 0.93223 1.08888 1.18482 0.96414 0.92087 0.95839 1.20566 1.00500 0.97108 1.02481 1.20740 1.01284 0.93359 0.98421 1.18271 0.99631 0.83954 1.06402 1.91230 1.80244 1.46934 1.96732 1.17880 0.90177 0.94566 0.91930 1.19619 1.37533 0.94491 1.00813 0.91219 1.26662 0.94033 0.98419 0.98401 1.69846 1.33718 1.20607 1.19922 0.85281 0.79049 0.78318 0.77324 1.18629 1.18704 1.18329 1.21160 1.01680 0.93523 1.00026 0.88899 0.89342 0.92536 0.82016 0.76380 0.74709 0.83758 0.85011 0.85123 0.89877 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 8.52 71.24 0.61 -2.41 16 2 C 0.00 0.05 5.90 -19.49 -0.11 -0.06 16 3 C -0.24 -6.18 9.62 22.47 0.22 -5.96 16 4 C 0.39 10.85 7.74 133.09 1.03 11.88 16 5 N -0.84 -15.40 9.07 -55.41 -0.50 -15.91 16 6 N -0.57 -19.68 10.38 -192.42 -2.00 -21.67 16 7 C 0.15 5.55 10.67 84.93 0.91 6.45 16 8 C -0.15 -5.88 5.48 -19.93 -0.11 -5.99 16 9 C -0.03 -1.19 4.78 -20.09 -0.10 -1.29 16 10 C -0.19 -7.57 7.98 22.66 0.18 -7.39 16 11 C -0.12 -5.18 9.99 22.23 0.22 -4.96 16 12 C -0.06 -3.23 7.31 22.92 0.17 -3.06 16 13 F -0.17 -8.96 16.71 44.97 0.75 -8.21 16 14 C 0.06 3.16 5.57 -21.27 -0.12 3.04 16 15 C -0.50 -27.64 8.77 23.43 0.21 -27.43 16 16 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 17 C 0.04 2.09 5.15 85.24 0.44 2.52 16 18 N -0.82 -42.61 10.97 21.82 0.24 -42.37 16 19 Si 0.98 38.99 29.59 68.60 2.03 41.02 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 23 C -0.14 -7.41 8.14 22.93 0.19 -7.22 16 24 H 0.09 2.11 7.58 -2.39 -0.02 2.09 16 25 H 0.09 1.86 8.10 -2.38 -0.02 1.85 16 26 H 0.06 1.86 6.58 -2.39 -0.02 1.84 16 27 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 28 H 0.41 6.79 8.95 -92.70 -0.83 5.96 16 29 H 0.42 4.81 8.82 -92.70 -0.82 3.99 16 30 H 0.15 5.57 8.04 -2.91 -0.02 5.55 16 31 H 0.13 4.43 6.93 -2.91 -0.02 4.41 16 32 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 33 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 34 H 0.11 5.97 6.17 -2.91 -0.02 5.95 16 Total: -1.00 -64.50 296.96 3.76 -60.74 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.48 Total: 28.28 kcal Atomic # 6 Polarization: -45.60 SS G_CDS: 3.72 Total: -41.88 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.26 Total: -79.95 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.75 Total: -8.21 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -64.50 3.76 -60.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242089736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.152 kcal (2) G-P(sol) polarization free energy of solvation -64.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds