Wall clock time and date at job start Mon Mar 30 2020 01:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36962 * 120.75520 * 2 1 4 4 C 1.39309 * 119.38992 * 179.97438 * 3 2 1 5 5 N 1.38752 * 119.53281 * 179.97438 * 4 3 2 6 6 N 1.32569 * 120.93869 * 359.74626 * 4 3 2 7 7 C 1.31721 * 121.63641 * 0.51990 * 6 4 3 8 8 C 1.39640 * 120.50433 * 359.48522 * 7 6 4 9 9 C 1.47742 * 120.47618 * 180.23116 * 8 7 6 10 10 C 1.39219 * 120.26060 * 65.00025 * 9 8 7 11 11 C 1.37950 * 120.12972 * 179.97438 * 10 9 8 12 12 C 1.39226 * 120.66296 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.74565 * 179.97438 * 12 11 10 14 14 C 1.37603 * 120.51402 * 0.02562 * 12 11 10 15 15 C 1.40730 * 119.84924 * 359.72198 * 14 12 11 16 16 C 1.40835 * 120.32472 * 180.27945 * 15 14 12 17 17 H 1.08001 * 120.00721 * 204.97778 * 16 15 14 18 18 C 1.40032 * 119.99818 * 24.97353 * 16 15 14 19 19 N 1.30805 * 119.99604 * 17.45970 * 18 16 15 20 20 Si 1.86800 * 120.00028 * 197.46743 * 18 16 15 21 21 H 1.48498 * 109.47232 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47254 * 119.99645 * 20 18 16 23 23 H 1.48500 * 109.46654 * 239.99998 * 20 18 16 24 24 H 1.08996 * 109.47088 * 270.01988 * 1 2 3 25 25 H 1.09003 * 109.47303 * 30.02115 * 1 2 3 26 26 H 1.09005 * 109.47465 * 150.02043 * 1 2 3 27 27 H 1.08003 * 120.30184 * 0.02562 * 3 2 1 28 28 H 0.97002 * 119.99472 * 0.02562 * 5 4 3 29 29 H 0.96992 * 120.00460 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.75165 * 179.75514 * 7 6 4 31 31 H 1.08000 * 119.93872 * 0.02562 * 10 9 8 32 32 H 1.08002 * 119.67058 * 180.02562 * 11 10 9 33 33 H 1.07995 * 120.07321 * 179.97438 * 14 12 11 34 34 H 0.97001 * 119.99758 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2073 1.1770 0.0000 4 6 3.6000 1.1438 0.0005 5 7 4.3125 2.3344 0.0000 6 7 4.2543 -0.0092 0.0061 7 6 3.6200 -1.1636 0.0011 8 6 2.2242 -1.2054 0.0005 9 6 1.5133 -2.5006 0.0001 10 6 1.6208 -3.3602 1.0899 11 6 0.9555 -4.5687 1.0868 12 6 0.1705 -4.9443 0.0000 13 9 -0.4726 -6.1322 0.0164 14 6 0.0454 -4.1153 -1.0912 15 6 0.7104 -2.8752 -1.1086 16 6 0.5846 -2.0164 -2.2177 17 1 1.3588 -1.2947 -2.4326 18 6 -0.5444 -2.0983 -3.0421 19 7 -1.6221 -2.7054 -2.6166 20 14 -0.5113 -1.3409 -4.7493 21 1 0.8151 -0.7173 -4.9885 22 1 -0.7522 -2.3975 -5.7644 23 1 -1.5704 -0.3050 -4.8518 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6846 2.1221 0.0004 28 1 3.8407 3.1819 -0.0004 29 1 5.2823 2.3193 0.0008 30 1 4.1836 -2.0848 0.0019 31 1 2.2256 -3.0802 1.9397 32 1 1.0438 -5.2297 1.9363 33 1 -0.5651 -4.4140 -1.9305 34 1 -2.4041 -2.7624 -3.1878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242089821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:09 Heat of formation + Delta-G solvation = -4.406643 kcal Electronic energy + Delta-G solvation = -20343.171226 eV Core-core repulsion = 17154.243112 eV Total energy + Delta-G solvation = -3188.928114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.67184 -39.72071 -37.45507 -34.43719 -33.89371 -32.90927 -30.38532 -29.78936 -27.27146 -26.98609 -25.30205 -22.81300 -21.32326 -21.20597 -19.87072 -17.64379 -16.96182 -16.38621 -15.97013 -15.49168 -14.96819 -14.76540 -14.46609 -14.30739 -13.70838 -13.62242 -13.17150 -12.81176 -12.48519 -12.34209 -12.06365 -11.89097 -11.71417 -11.26027 -11.19768 -10.96503 -10.64264 -10.47574 -10.15768 -10.04837 -9.65298 -9.29248 -8.88757 -8.71306 -7.65189 -7.50560 -7.08589 -6.82524 -4.56070 1.90088 2.07309 2.58655 2.76339 2.99258 3.04590 3.07813 3.80047 3.93326 4.38014 4.55741 5.20082 5.36575 5.56312 5.64829 5.73493 5.81072 5.99917 6.21211 6.31058 6.34016 6.39773 6.44879 6.64420 6.84527 6.89980 6.97854 7.11904 7.25390 7.33500 7.44529 7.59755 7.69383 7.70682 7.82957 7.89134 8.08709 8.41646 8.65479 8.70970 8.79346 9.95092 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.008354 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.511115 B = 3350.722165 C = 4800.221925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.022 3.978 3 C -0.244 4.244 4 C 0.380 3.620 5 N -0.863 5.863 6 N -0.553 5.553 7 C 0.135 3.865 8 C -0.088 4.088 9 C -0.174 4.174 10 C -0.049 4.049 11 C -0.277 4.277 12 C 0.106 3.894 13 F -0.168 7.168 14 C -0.199 4.199 15 C 0.144 3.856 16 C -0.438 4.438 17 H 0.085 0.915 18 C 0.077 3.923 19 N -0.779 5.779 20 Si 0.904 3.096 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.272 1.272 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.401 0.599 29 H 0.397 0.603 30 H 0.149 0.851 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 6.584 1.982 7.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.014 3.986 3 C -0.268 4.268 4 C 0.144 3.856 5 N -0.407 5.407 6 N -0.271 5.271 7 C -0.020 4.020 8 C -0.093 4.093 9 C -0.176 4.176 10 C -0.067 4.067 11 C -0.297 4.297 12 C 0.087 3.913 13 F -0.147 7.147 14 C -0.219 4.219 15 C 0.141 3.859 16 C -0.466 4.466 17 H 0.103 0.897 18 C -0.144 4.144 19 N -0.403 5.403 20 Si 0.728 3.272 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.197 1.197 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.230 0.770 29 H 0.225 0.775 30 H 0.167 0.833 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.148 0.852 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.320 6.453 1.916 7.999 hybrid contribution -0.936 0.478 -0.762 1.298 sum 3.384 6.931 1.154 7.799 Atomic orbital electron populations 1.21081 0.90424 1.05216 1.01631 1.19951 0.96671 0.91318 0.90649 1.20826 0.92609 0.98901 1.14513 1.18273 0.88206 0.86601 0.92525 1.41985 1.09003 1.04318 1.85398 1.67056 1.40616 0.97458 1.21991 1.22589 0.91312 0.93934 0.94203 1.19308 0.92936 0.93235 1.03789 1.18363 1.08903 0.94188 0.96134 1.20372 0.97292 0.92735 0.96314 1.20171 1.09237 1.00574 0.99718 1.17767 0.95428 0.81282 0.96819 1.91333 1.80572 1.45725 1.97091 1.21233 1.07509 0.94805 0.98342 1.17246 0.87988 0.90150 0.90479 1.19512 1.03829 1.16211 1.07027 0.89727 1.25986 0.94606 0.93954 0.99808 1.69804 1.02009 1.31999 1.36470 0.86301 0.79789 0.79562 0.81583 1.18156 1.19480 1.19735 0.92196 0.92834 0.86694 0.86363 0.77013 0.77509 0.83339 0.88336 0.88233 0.85240 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.35 36.00 0.34 -2.08 16 2 C 0.02 0.42 5.30 -104.33 -0.55 -0.13 16 3 C -0.24 -4.17 9.55 -39.65 -0.38 -4.55 16 4 C 0.38 6.39 7.74 -155.05 -1.20 5.20 16 5 N -0.86 -10.57 9.06 31.14 0.28 -10.29 16 6 N -0.55 -10.27 10.39 -12.07 -0.13 -10.39 16 7 C 0.14 2.60 10.92 -17.08 -0.19 2.42 16 8 C -0.09 -1.81 4.38 -104.73 -0.46 -2.27 16 9 C -0.17 -3.85 4.73 -104.24 -0.49 -4.35 16 10 C -0.05 -1.03 9.72 -39.32 -0.38 -1.41 16 11 C -0.28 -6.06 10.01 -39.32 -0.39 -6.45 16 12 C 0.11 2.52 7.28 -39.45 -0.29 2.23 16 13 F -0.17 -3.90 17.26 2.25 0.04 -3.86 16 14 C -0.20 -4.94 8.65 -38.87 -0.34 -5.28 16 15 C 0.14 3.49 4.59 -106.56 -0.49 3.01 16 16 C -0.44 -10.44 6.16 -37.93 -0.23 -10.67 16 17 H 0.08 2.05 7.06 -52.49 -0.37 1.68 16 18 C 0.08 1.76 5.14 -17.32 -0.09 1.67 16 19 N -0.78 -18.43 10.96 55.55 0.61 -17.82 16 20 Si 0.90 17.64 29.60 -169.99 -5.03 12.61 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 26 H 0.11 2.56 4.47 -51.93 -0.23 2.33 16 27 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.40 3.77 8.82 -40.82 -0.36 3.41 16 29 H 0.40 4.35 8.95 -40.82 -0.37 3.99 16 30 H 0.15 2.64 8.06 -52.49 -0.42 2.22 16 31 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.13 3.35 6.18 -52.49 -0.32 3.03 16 34 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 LS Contribution 294.32 15.07 4.44 4.44 Total: -1.00 -26.25 294.32 -8.26 -34.50 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -3.32 Total: 13.50 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -5.14 Total: -22.68 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.77 Total: -38.50 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.25 -8.26 -34.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242089821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.094 kcal (2) G-P(sol) polarization free energy of solvation -26.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds