Wall clock time and date at job start Mon Mar 30 2020 01:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36962 * 120.75520 * 2 1 4 4 C 1.39309 * 119.38992 * 179.97438 * 3 2 1 5 5 N 1.38752 * 119.53281 * 179.97438 * 4 3 2 6 6 N 1.32569 * 120.93869 * 359.74626 * 4 3 2 7 7 C 1.31721 * 121.63641 * 0.51990 * 6 4 3 8 8 C 1.39640 * 120.50433 * 359.48522 * 7 6 4 9 9 C 1.47742 * 120.47618 * 180.23116 * 8 7 6 10 10 C 1.39219 * 120.26060 * 65.00025 * 9 8 7 11 11 C 1.37950 * 120.12972 * 179.97438 * 10 9 8 12 12 C 1.39226 * 120.66296 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.74565 * 179.97438 * 12 11 10 14 14 C 1.37603 * 120.51402 * 0.02562 * 12 11 10 15 15 C 1.40730 * 119.84924 * 359.72198 * 14 12 11 16 16 C 1.40835 * 120.32472 * 180.27945 * 15 14 12 17 17 H 1.08001 * 120.00721 * 204.97778 * 16 15 14 18 18 C 1.40032 * 119.99818 * 24.97353 * 16 15 14 19 19 N 1.30805 * 119.99604 * 17.45970 * 18 16 15 20 20 Si 1.86800 * 120.00028 * 197.46743 * 18 16 15 21 21 H 1.48498 * 109.47232 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47254 * 119.99645 * 20 18 16 23 23 H 1.48500 * 109.46654 * 239.99998 * 20 18 16 24 24 H 1.08996 * 109.47088 * 270.01988 * 1 2 3 25 25 H 1.09003 * 109.47303 * 30.02115 * 1 2 3 26 26 H 1.09005 * 109.47465 * 150.02043 * 1 2 3 27 27 H 1.08003 * 120.30184 * 0.02562 * 3 2 1 28 28 H 0.97002 * 119.99472 * 0.02562 * 5 4 3 29 29 H 0.96992 * 120.00460 * 179.97438 * 5 4 3 30 30 H 1.08001 * 119.75165 * 179.75514 * 7 6 4 31 31 H 1.08000 * 119.93872 * 0.02562 * 10 9 8 32 32 H 1.08002 * 119.67058 * 180.02562 * 11 10 9 33 33 H 1.07995 * 120.07321 * 179.97438 * 14 12 11 34 34 H 0.97001 * 119.99758 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2073 1.1770 0.0000 4 6 3.6000 1.1438 0.0005 5 7 4.3125 2.3344 0.0000 6 7 4.2543 -0.0092 0.0061 7 6 3.6200 -1.1636 0.0011 8 6 2.2242 -1.2054 0.0005 9 6 1.5133 -2.5006 0.0001 10 6 1.6208 -3.3602 1.0899 11 6 0.9555 -4.5687 1.0868 12 6 0.1705 -4.9443 0.0000 13 9 -0.4726 -6.1322 0.0164 14 6 0.0454 -4.1153 -1.0912 15 6 0.7104 -2.8752 -1.1086 16 6 0.5846 -2.0164 -2.2177 17 1 1.3588 -1.2947 -2.4326 18 6 -0.5444 -2.0983 -3.0421 19 7 -1.6221 -2.7054 -2.6166 20 14 -0.5113 -1.3409 -4.7493 21 1 0.8151 -0.7173 -4.9885 22 1 -0.7522 -2.3975 -5.7644 23 1 -1.5704 -0.3050 -4.8518 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6846 2.1221 0.0004 28 1 3.8407 3.1819 -0.0004 29 1 5.2823 2.3193 0.0008 30 1 4.1836 -2.0848 0.0019 31 1 2.2256 -3.0802 1.9397 32 1 1.0438 -5.2297 1.9363 33 1 -0.5651 -4.4140 -1.9305 34 1 -2.4041 -2.7624 -3.1878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242089821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:09 Heat of formation + Delta-G solvation = -17.698213 kcal Electronic energy + Delta-G solvation = -20343.747592 eV Core-core repulsion = 17154.243112 eV Total energy + Delta-G solvation = -3189.504480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.51909 -41.14512 -39.12829 -35.76391 -35.62877 -34.30521 -31.96246 -31.53291 -28.75691 -28.52371 -27.01792 -24.30278 -23.05355 -22.71070 -21.46107 -19.42559 -18.20999 -17.76837 -17.65782 -17.07915 -16.67400 -16.43035 -16.18580 -15.76843 -15.13276 -15.01930 -14.80997 -14.46240 -14.04549 -13.91049 -13.76310 -13.42674 -13.25713 -12.89240 -12.75178 -12.67725 -12.26847 -12.11042 -11.75229 -11.59690 -11.21854 -11.01124 -10.33089 -10.13879 -9.44099 -9.14560 -8.72885 -8.33868 -6.35556 0.44309 0.60286 0.90417 1.03027 1.38652 1.47415 1.51530 2.17655 2.64377 2.80117 3.12700 3.59453 3.84977 3.85799 4.14670 4.29648 4.41826 4.53011 4.61012 4.64052 4.86125 4.94972 5.02511 5.08563 5.11005 5.24005 5.32358 5.49031 5.66044 5.75810 5.84903 5.85829 6.02081 6.10453 6.31106 6.55864 6.60949 6.73062 6.87891 6.93593 7.51464 8.25352 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.008354 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.511115 B = 3350.722165 C = 4800.221925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.011 3.989 3 C -0.243 4.243 4 C 0.382 3.618 5 N -0.841 5.841 6 N -0.566 5.566 7 C 0.134 3.866 8 C -0.117 4.117 9 C -0.166 4.166 10 C -0.051 4.051 11 C -0.275 4.275 12 C 0.090 3.910 13 F -0.170 7.170 14 C -0.225 4.225 15 C 0.126 3.874 16 C -0.448 4.448 17 H 0.076 0.924 18 C 0.045 3.955 19 N -0.807 5.807 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.262 1.262 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.418 0.582 29 H 0.406 0.594 30 H 0.156 0.844 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 8.727 2.304 10.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.003 3.997 3 C -0.268 4.268 4 C 0.144 3.856 5 N -0.386 5.386 6 N -0.285 5.285 7 C -0.021 4.021 8 C -0.122 4.122 9 C -0.168 4.168 10 C -0.069 4.069 11 C -0.295 4.295 12 C 0.071 3.929 13 F -0.149 7.149 14 C -0.245 4.245 15 C 0.123 3.877 16 C -0.477 4.477 17 H 0.094 0.906 18 C -0.173 4.173 19 N -0.432 5.432 20 Si 0.787 3.213 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.187 1.187 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.166 0.834 28 H 0.250 0.750 29 H 0.236 0.764 30 H 0.173 0.827 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.128 0.872 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.416 8.633 2.250 10.436 hybrid contribution -1.193 -0.092 -0.782 1.430 sum 4.223 8.541 1.468 9.640 Atomic orbital electron populations 1.20975 0.90662 1.04341 1.01911 1.20051 0.96718 0.91875 0.91042 1.21056 0.92862 0.99286 1.13578 1.18566 0.88623 0.87343 0.91070 1.41953 1.09581 1.03638 1.83468 1.67126 1.40688 0.97775 1.22942 1.22660 0.90886 0.94739 0.93853 1.19274 0.93522 0.92826 1.06582 1.18610 1.07640 0.95064 0.95461 1.20690 0.97125 0.92211 0.96859 1.20447 1.08291 1.01180 0.99602 1.17977 0.96199 0.81333 0.97391 1.91316 1.80723 1.45700 1.97136 1.21169 1.08849 0.95931 0.98560 1.17489 0.88700 0.90033 0.91514 1.19471 1.04030 1.16357 1.07795 0.90637 1.26628 0.93943 0.94170 1.02565 1.69850 1.02620 1.32990 1.37729 0.85390 0.79583 0.78905 0.77469 1.18557 1.19246 1.18669 0.91348 0.91118 0.90079 0.83435 0.75046 0.76398 0.82673 0.85623 0.85971 0.87219 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 9.35 71.23 0.67 -3.91 16 2 C 0.01 0.40 5.30 -19.67 -0.10 0.30 16 3 C -0.24 -7.64 9.55 22.23 0.21 -7.42 16 4 C 0.38 11.72 7.74 133.14 1.03 12.75 16 5 N -0.84 -17.43 9.06 -55.39 -0.50 -17.94 16 6 N -0.57 -19.82 10.39 -192.09 -1.99 -21.82 16 7 C 0.13 5.00 10.92 85.05 0.93 5.93 16 8 C -0.12 -4.72 4.38 -19.93 -0.09 -4.81 16 9 C -0.17 -7.37 4.73 -19.62 -0.09 -7.47 16 10 C -0.05 -2.10 9.72 22.44 0.22 -1.88 16 11 C -0.28 -11.91 10.01 22.44 0.22 -11.68 16 12 C 0.09 4.36 7.28 22.36 0.16 4.53 16 13 F -0.17 -8.02 17.26 44.97 0.78 -7.25 16 14 C -0.22 -11.62 8.65 22.73 0.20 -11.42 16 15 C 0.13 6.24 4.59 -21.12 -0.10 6.14 16 16 C -0.45 -21.88 6.16 23.34 0.14 -21.74 16 17 H 0.08 3.74 7.06 -2.91 -0.02 3.72 16 18 C 0.04 2.07 5.14 85.28 0.44 2.51 16 19 N -0.81 -39.31 10.96 21.84 0.24 -39.07 16 20 Si 0.96 36.29 29.60 68.60 2.03 38.32 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.07 2.31 8.10 -2.39 -0.02 2.29 16 26 H 0.08 3.66 4.47 -2.38 -0.01 3.65 16 27 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.42 6.06 8.82 -92.71 -0.82 5.25 16 29 H 0.41 7.41 8.95 -92.71 -0.83 6.58 16 30 H 0.16 5.39 8.06 -2.91 -0.02 5.36 16 31 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 33 H 0.11 6.00 6.18 -2.91 -0.02 5.98 16 34 H 0.29 12.88 8.30 -92.71 -0.77 12.11 16 Total: -1.00 -56.86 294.32 3.91 -52.95 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.48 Total: 32.96 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 3.84 Total: -38.17 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -2.26 Total: -78.82 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.78 Total: -7.25 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.03 Total: 38.32 kcal Total: -56.86 3.91 -52.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242089821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.254 kcal (2) G-P(sol) polarization free energy of solvation -56.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds