Wall clock time and date at job start Mon Mar 30 2020 01:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38103 * 120.79600 * 2 1 4 4 C 1.39195 * 119.22342 * 179.97438 * 3 2 1 5 5 N 1.38936 * 119.57383 * 180.02562 * 4 3 2 6 6 N 1.32468 * 120.85152 * 359.97438 * 4 3 2 7 7 C 1.31781 * 121.74972 * 359.97438 * 6 4 3 8 8 C 1.39210 * 120.68729 * 359.74195 * 7 6 4 9 9 C 1.48358 * 120.45791 * 180.28377 * 8 7 6 10 10 C 1.38675 * 120.01561 * 65.23024 * 9 8 7 11 11 C 1.40549 * 119.65698 * 180.02562 * 10 9 8 12 12 C 1.41333 * 120.15508 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00097 * 204.53908 * 12 11 10 14 14 C 1.39897 * 120.00089 * 24.54217 * 12 11 10 15 15 N 1.30859 * 120.00145 * 17.92051 * 14 12 11 16 16 Si 1.86800 * 119.99894 * 197.92243 * 14 12 11 17 17 H 1.48505 * 109.47123 * 89.99805 * 16 14 12 18 18 H 1.48497 * 109.47411 * 209.99740 * 16 14 12 19 19 H 1.48499 * 109.47089 * 330.00215 * 16 14 12 20 20 C 1.40858 * 119.68526 * 359.97438 * 11 10 9 21 21 C 1.37559 * 120.02757 * 359.97438 * 20 11 10 22 22 C 1.38751 * 120.34671 * 359.76817 * 21 20 11 23 23 F 1.35105 * 119.84065 * 180.25105 * 22 21 20 24 24 H 1.09004 * 109.46973 * 90.00873 * 1 2 3 25 25 H 1.08995 * 109.47700 * 330.00225 * 1 2 3 26 26 H 1.09007 * 109.46802 * 210.00026 * 1 2 3 27 27 H 1.08000 * 120.38720 * 359.97438 * 3 2 1 28 28 H 0.96997 * 119.99819 * 0.02562 * 5 4 3 29 29 H 0.97001 * 120.00448 * 179.97438 * 5 4 3 30 30 H 1.08008 * 119.65930 * 179.97438 * 7 6 4 31 31 H 1.08000 * 120.17024 * 359.97267 * 10 9 8 32 32 H 0.96998 * 120.00143 * 179.97438 * 15 14 12 33 33 H 1.08004 * 119.98379 * 180.02562 * 20 11 10 34 34 H 1.08000 * 119.83066 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1863 0.0000 4 6 3.6055 1.1481 0.0005 5 7 4.3241 2.3372 0.0011 6 7 4.2533 -0.0074 0.0016 7 6 3.6150 -1.1603 0.0026 8 6 2.2236 -1.2019 0.0081 9 6 1.5102 -2.5027 0.0155 10 6 1.6219 -3.3489 1.1085 11 6 0.9433 -4.5797 1.1074 12 6 1.0501 -5.4504 2.2156 13 1 0.8871 -6.5102 2.0872 14 6 1.3670 -4.9393 3.4787 15 7 1.2227 -3.6618 3.7227 16 14 1.9961 -6.0806 4.8171 17 1 3.4777 -6.1538 4.7491 18 1 1.5867 -5.5585 6.1456 19 1 1.4239 -7.4367 4.6204 20 6 0.1561 -4.9412 -0.0034 21 6 0.0536 -4.0915 -1.0802 22 6 0.7187 -2.8738 -1.0782 23 9 0.6068 -2.0448 -2.1391 24 1 -0.3633 -0.0002 -1.0277 25 1 -0.3634 0.8899 0.5138 26 1 -0.3633 -0.8901 0.5139 27 1 1.6935 2.1326 -0.0004 28 1 3.8560 3.1867 0.0015 29 1 5.2939 2.3179 0.0018 30 1 4.1773 -2.0825 0.0030 31 1 2.2279 -3.0639 1.9558 32 1 1.4421 -3.3075 4.5986 33 1 -0.3678 -5.8857 -0.0091 34 1 -0.5511 -4.3717 -1.9300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242090100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:18 Heat of formation + Delta-G solvation = -4.743546 kcal Electronic energy + Delta-G solvation = -20162.617748 eV Core-core repulsion = 16973.675025 eV Total energy + Delta-G solvation = -3188.942723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.47112 -39.80031 -37.38382 -34.83039 -33.59068 -33.09479 -30.84639 -29.40428 -27.63178 -27.04675 -25.09813 -23.08642 -21.48520 -21.13904 -20.03652 -17.42770 -17.12023 -16.58137 -16.17909 -15.46227 -15.06818 -14.74255 -14.56327 -14.13684 -13.81982 -13.76090 -13.28739 -12.81731 -12.59043 -12.19676 -12.08086 -11.99892 -11.88254 -11.36623 -11.15404 -11.12263 -10.90659 -10.41045 -10.32734 -9.91817 -9.66967 -9.21525 -9.05788 -8.92933 -7.81396 -7.42748 -7.13972 -6.86963 -4.44919 1.71654 1.84896 2.59093 2.77464 3.03120 3.06206 3.09280 3.77841 3.85943 4.33460 4.44849 5.01156 5.29968 5.42669 5.49654 5.57771 5.70119 5.79236 5.98544 6.07828 6.11780 6.17295 6.42244 6.51543 6.66996 6.86909 6.91330 6.99860 7.05572 7.14299 7.36804 7.53132 7.63156 7.69105 7.76793 7.90665 8.10149 8.44552 8.62217 8.74179 8.78082 10.06710 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.006422 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.809241 B = 4358.826443 C = 5379.146369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.015 3.985 3 C -0.243 4.243 4 C 0.389 3.611 5 N -0.860 5.860 6 N -0.550 5.550 7 C 0.157 3.843 8 C -0.122 4.122 9 C -0.054 4.054 10 C -0.124 4.124 11 C 0.102 3.898 12 C -0.457 4.457 13 H 0.081 0.919 14 C 0.076 3.924 15 N -0.788 5.788 16 Si 0.909 3.091 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.261 1.261 20 C -0.203 4.203 21 C -0.119 4.119 22 C -0.030 4.030 23 F -0.169 7.169 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.403 0.597 29 H 0.399 0.601 30 H 0.155 0.845 31 H 0.128 0.872 32 H 0.283 0.717 33 H 0.102 0.898 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.804 7.383 -2.817 8.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.008 3.992 3 C -0.268 4.268 4 C 0.153 3.847 5 N -0.405 5.405 6 N -0.268 5.268 7 C 0.001 3.999 8 C -0.126 4.126 9 C -0.056 4.056 10 C -0.144 4.144 11 C 0.099 3.901 12 C -0.486 4.486 13 H 0.100 0.900 14 C -0.143 4.143 15 N -0.412 5.412 16 Si 0.733 3.267 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.185 1.185 20 C -0.223 4.223 21 C -0.138 4.138 22 C -0.050 4.050 23 F -0.149 7.149 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.141 0.859 28 H 0.232 0.768 29 H 0.227 0.773 30 H 0.172 0.828 31 H 0.146 0.854 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.680 7.561 -2.648 8.448 hybrid contribution -0.497 0.052 0.529 0.728 sum 2.183 7.613 -2.119 8.199 Atomic orbital electron populations 1.20820 0.90546 1.03086 1.02674 1.20086 0.96384 0.91446 0.91318 1.21010 0.92648 0.98608 1.14505 1.18275 0.88151 0.86700 0.91589 1.42049 1.09139 1.04251 1.85015 1.67069 1.40586 0.97378 1.21761 1.22487 0.90944 0.94296 0.92208 1.19459 0.93869 0.93177 1.06095 1.18222 0.99276 0.93319 0.94785 1.21329 1.01783 0.94940 0.96306 1.17578 0.88645 0.91952 0.91907 1.19572 1.41564 0.95533 0.91883 0.90049 1.25928 0.92811 0.95484 1.00088 1.69809 1.33831 1.13938 1.23658 0.86290 0.80099 0.81091 0.79197 1.19136 1.20276 1.18520 1.20873 1.04800 1.00496 0.96111 1.20447 1.00778 0.93643 0.98941 1.17246 1.09563 0.91675 0.86554 1.91279 1.95846 1.72034 1.55697 0.90605 0.92021 0.90096 0.85874 0.76843 0.77264 0.82787 0.85385 0.90605 0.88024 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 8.79 36.01 0.32 -1.66 16 2 C 0.02 0.29 5.77 -104.04 -0.60 -0.31 16 3 C -0.24 -3.98 9.62 -39.28 -0.38 -4.36 16 4 C 0.39 6.39 7.74 -155.00 -1.20 5.19 16 5 N -0.86 -10.10 9.07 31.14 0.28 -9.82 16 6 N -0.55 -10.24 10.38 -12.17 -0.13 -10.37 16 7 C 0.16 3.10 10.89 -17.21 -0.19 2.92 16 8 C -0.12 -2.53 5.01 -104.74 -0.52 -3.06 16 9 C -0.05 -1.24 4.23 -104.91 -0.44 -1.68 16 10 C -0.12 -3.05 8.37 -38.55 -0.32 -3.37 16 11 C 0.10 2.55 5.57 -106.86 -0.60 1.95 16 12 C -0.46 -11.38 9.04 -37.78 -0.34 -11.73 16 13 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 14 C 0.08 1.80 5.13 -17.35 -0.09 1.71 16 15 N -0.79 -19.45 10.96 55.54 0.61 -18.84 16 16 Si 0.91 17.90 29.60 -169.99 -5.03 12.87 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 18 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 C -0.20 -4.69 9.78 -38.84 -0.38 -5.07 16 21 C -0.12 -2.62 9.99 -39.64 -0.40 -3.01 16 22 C -0.03 -0.69 6.52 -38.73 -0.25 -0.94 16 23 F -0.17 -3.72 15.70 2.25 0.04 -3.68 16 24 H 0.08 1.26 7.64 -51.93 -0.40 0.87 16 25 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 26 H 0.08 1.58 7.02 -51.93 -0.36 1.22 16 27 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.40 3.51 8.82 -40.82 -0.36 3.15 16 29 H 0.40 4.21 8.95 -40.82 -0.37 3.84 16 30 H 0.15 2.86 8.06 -52.48 -0.42 2.44 16 31 H 0.13 3.29 6.16 -52.49 -0.32 2.97 16 32 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 33 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 34 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 298.59 15.07 4.50 4.50 Total: -1.00 -27.58 298.59 -8.60 -36.18 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -3.47 Total: 12.58 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -5.39 Total: -23.42 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.76 Total: -39.03 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.58 -8.60 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242090100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.436 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds