Wall clock time and date at job start Mon Mar 30 2020 01:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38103 * 120.79600 * 2 1 4 4 C 1.39195 * 119.22342 * 179.97438 * 3 2 1 5 5 N 1.38936 * 119.57383 * 180.02562 * 4 3 2 6 6 N 1.32468 * 120.85152 * 359.97438 * 4 3 2 7 7 C 1.31781 * 121.74972 * 359.97438 * 6 4 3 8 8 C 1.39210 * 120.68729 * 359.74195 * 7 6 4 9 9 C 1.48358 * 120.45791 * 180.28377 * 8 7 6 10 10 C 1.38675 * 120.01561 * 65.23024 * 9 8 7 11 11 C 1.40549 * 119.65698 * 180.02562 * 10 9 8 12 12 C 1.41333 * 120.15508 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00097 * 204.53908 * 12 11 10 14 14 C 1.39897 * 120.00089 * 24.54217 * 12 11 10 15 15 N 1.30859 * 120.00145 * 17.92051 * 14 12 11 16 16 Si 1.86800 * 119.99894 * 197.92243 * 14 12 11 17 17 H 1.48505 * 109.47123 * 89.99805 * 16 14 12 18 18 H 1.48497 * 109.47411 * 209.99740 * 16 14 12 19 19 H 1.48499 * 109.47089 * 330.00215 * 16 14 12 20 20 C 1.40858 * 119.68526 * 359.97438 * 11 10 9 21 21 C 1.37559 * 120.02757 * 359.97438 * 20 11 10 22 22 C 1.38751 * 120.34671 * 359.76817 * 21 20 11 23 23 F 1.35105 * 119.84065 * 180.25105 * 22 21 20 24 24 H 1.09004 * 109.46973 * 90.00873 * 1 2 3 25 25 H 1.08995 * 109.47700 * 330.00225 * 1 2 3 26 26 H 1.09007 * 109.46802 * 210.00026 * 1 2 3 27 27 H 1.08000 * 120.38720 * 359.97438 * 3 2 1 28 28 H 0.96997 * 119.99819 * 0.02562 * 5 4 3 29 29 H 0.97001 * 120.00448 * 179.97438 * 5 4 3 30 30 H 1.08008 * 119.65930 * 179.97438 * 7 6 4 31 31 H 1.08000 * 120.17024 * 359.97267 * 10 9 8 32 32 H 0.96998 * 120.00143 * 179.97438 * 15 14 12 33 33 H 1.08004 * 119.98379 * 180.02562 * 20 11 10 34 34 H 1.08000 * 119.83066 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1863 0.0000 4 6 3.6055 1.1481 0.0005 5 7 4.3241 2.3372 0.0011 6 7 4.2533 -0.0074 0.0016 7 6 3.6150 -1.1603 0.0026 8 6 2.2236 -1.2019 0.0081 9 6 1.5102 -2.5027 0.0155 10 6 1.6219 -3.3489 1.1085 11 6 0.9433 -4.5797 1.1074 12 6 1.0501 -5.4504 2.2156 13 1 0.8871 -6.5102 2.0872 14 6 1.3670 -4.9393 3.4787 15 7 1.2227 -3.6618 3.7227 16 14 1.9961 -6.0806 4.8171 17 1 3.4777 -6.1538 4.7491 18 1 1.5867 -5.5585 6.1456 19 1 1.4239 -7.4367 4.6204 20 6 0.1561 -4.9412 -0.0034 21 6 0.0536 -4.0915 -1.0802 22 6 0.7187 -2.8738 -1.0782 23 9 0.6068 -2.0448 -2.1391 24 1 -0.3633 -0.0002 -1.0277 25 1 -0.3634 0.8899 0.5138 26 1 -0.3633 -0.8901 0.5139 27 1 1.6935 2.1326 -0.0004 28 1 3.8560 3.1867 0.0015 29 1 5.2939 2.3179 0.0018 30 1 4.1773 -2.0825 0.0030 31 1 2.2279 -3.0639 1.9558 32 1 1.4421 -3.3075 4.5986 33 1 -0.3678 -5.8857 -0.0091 34 1 -0.5511 -4.3717 -1.9300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242090100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:18 Heat of formation + Delta-G solvation = -19.271698 kcal Electronic energy + Delta-G solvation = -20163.247736 eV Core-core repulsion = 16973.675025 eV Total energy + Delta-G solvation = -3189.572711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.24780 -41.19858 -39.13163 -36.20562 -35.31631 -34.46586 -32.41707 -31.23299 -29.01716 -28.53239 -26.93244 -24.58568 -22.93597 -22.92069 -21.65341 -19.20527 -18.37288 -17.97430 -17.84137 -17.19998 -16.66254 -16.22996 -16.16188 -15.73597 -15.23995 -15.19002 -14.86353 -14.53030 -13.97328 -13.77711 -13.73758 -13.57040 -13.50293 -13.01361 -12.83481 -12.67433 -12.48973 -12.17228 -11.79948 -11.46053 -11.39600 -10.99507 -10.51650 -10.32759 -9.46540 -9.24054 -8.67296 -8.55394 -6.33810 0.27897 0.39952 0.84704 0.99495 1.40997 1.50125 1.53680 2.20957 2.62523 2.65765 2.94414 3.59880 3.66320 3.87355 3.93964 4.07282 4.26620 4.35606 4.39451 4.60040 4.74493 4.81786 4.91905 5.00168 5.04165 5.13416 5.21717 5.28972 5.43837 5.64099 5.69888 5.81734 5.94035 6.05323 6.28186 6.42997 6.56238 6.63101 6.89030 6.93832 7.37604 8.29651 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.006422 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.809241 B = 4358.826443 C = 5379.146369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.003 3.997 3 C -0.237 4.237 4 C 0.389 3.611 5 N -0.836 5.836 6 N -0.565 5.565 7 C 0.148 3.852 8 C -0.158 4.158 9 C -0.044 4.044 10 C -0.145 4.145 11 C 0.077 3.923 12 C -0.487 4.487 13 H 0.084 0.916 14 C 0.038 3.962 15 N -0.818 5.818 16 Si 0.979 3.021 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.255 1.255 20 C -0.213 4.213 21 C -0.117 4.117 22 C -0.038 4.038 23 F -0.165 7.165 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.162 0.838 28 H 0.421 0.579 29 H 0.408 0.592 30 H 0.151 0.849 31 H 0.109 0.891 32 H 0.288 0.712 33 H 0.115 0.885 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 8.889 -2.868 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.005 4.005 3 C -0.261 4.261 4 C 0.150 3.850 5 N -0.382 5.382 6 N -0.284 5.284 7 C -0.008 4.008 8 C -0.163 4.163 9 C -0.046 4.046 10 C -0.165 4.165 11 C 0.075 3.925 12 C -0.516 4.516 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.443 5.443 16 Si 0.800 3.200 17 H -0.189 1.189 18 H -0.195 1.195 19 H -0.178 1.178 20 C -0.232 4.232 21 C -0.136 4.136 22 C -0.058 4.058 23 F -0.144 7.144 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.179 0.821 28 H 0.253 0.747 29 H 0.238 0.762 30 H 0.168 0.832 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.828 9.112 -2.718 9.920 hybrid contribution -0.512 -0.237 0.458 0.727 sum 2.316 8.875 -2.260 9.446 Atomic orbital electron populations 1.20777 0.89737 1.03056 1.02916 1.20339 0.97182 0.91626 0.91365 1.21333 0.92678 0.99213 1.12870 1.18622 0.88834 0.87298 0.90202 1.42014 1.09674 1.03537 1.82989 1.67096 1.40765 0.97731 1.22836 1.22443 0.90727 0.94971 0.92669 1.19496 0.94442 0.93119 1.09224 1.18360 0.98439 0.93862 0.93939 1.21183 1.02810 0.95808 0.96653 1.17931 0.89262 0.92470 0.92880 1.19837 1.43253 0.95731 0.92805 0.89839 1.26730 0.92280 0.96859 1.01942 1.69876 1.34391 1.15565 1.24485 0.85232 0.79292 0.79126 0.76326 1.18919 1.19500 1.17847 1.21060 1.04845 1.01344 0.95996 1.20724 1.00403 0.93039 0.99386 1.17401 1.09730 0.92033 0.86670 1.91278 1.95830 1.71949 1.55362 0.90136 0.88875 0.93236 0.82072 0.74691 0.76231 0.83163 0.87295 0.90087 0.86652 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.62 8.79 71.24 0.63 -2.99 16 2 C 0.00 0.09 5.77 -19.48 -0.11 -0.02 16 3 C -0.24 -7.10 9.62 22.47 0.22 -6.89 16 4 C 0.39 11.87 7.74 133.08 1.03 12.90 16 5 N -0.84 -16.78 9.07 -55.40 -0.50 -17.28 16 6 N -0.57 -20.60 10.38 -192.40 -2.00 -22.60 16 7 C 0.15 5.96 10.89 84.93 0.92 6.88 16 8 C -0.16 -6.68 5.01 -19.94 -0.10 -6.78 16 9 C -0.04 -2.08 4.23 -20.05 -0.08 -2.16 16 10 C -0.14 -7.45 8.37 22.94 0.19 -7.26 16 11 C 0.08 4.00 5.57 -21.31 -0.12 3.88 16 12 C -0.49 -25.03 9.04 23.43 0.21 -24.82 16 13 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 14 C 0.04 1.84 5.13 85.24 0.44 2.27 16 15 N -0.82 -41.60 10.96 21.82 0.24 -41.36 16 16 Si 0.98 36.98 29.60 68.60 2.03 39.01 16 17 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 18 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 20 C -0.21 -9.98 9.78 22.75 0.22 -9.76 16 21 C -0.12 -5.12 9.99 22.23 0.22 -4.90 16 22 C -0.04 -1.75 6.52 22.82 0.15 -1.60 16 23 F -0.16 -7.17 15.70 44.97 0.71 -6.46 16 24 H 0.08 2.58 7.64 -2.39 -0.02 2.56 16 25 H 0.09 2.45 8.10 -2.39 -0.02 2.43 16 26 H 0.05 1.95 7.02 -2.38 -0.02 1.94 16 27 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.42 5.54 8.82 -92.71 -0.82 4.72 16 29 H 0.41 7.30 8.95 -92.71 -0.83 6.47 16 30 H 0.15 5.89 8.06 -2.91 -0.02 5.87 16 31 H 0.11 5.94 6.16 -2.91 -0.02 5.92 16 32 H 0.29 13.39 8.30 -92.71 -0.77 12.63 16 33 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 34 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -60.68 298.59 3.81 -56.88 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.48 Total: 33.06 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 3.82 Total: -41.24 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -2.26 Total: -81.24 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.71 Total: -6.46 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -60.68 3.81 -56.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242090100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.605 kcal (2) G-P(sol) polarization free energy of solvation -60.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds