Wall clock time and date at job start Mon Mar 30 2020 01:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38097 * 120.80053 * 2 1 4 4 C 1.39198 * 119.22234 * 179.80453 * 3 2 1 5 5 N 1.38923 * 119.57305 * 180.20723 * 4 3 2 6 6 N 1.32465 * 120.85150 * 0.47802 * 4 3 2 7 7 C 1.31782 * 121.74627 * 359.75492 * 6 4 3 8 8 C 1.39199 * 120.68600 * 0.02562 * 7 6 4 9 9 C 1.48388 * 120.45345 * 180.02562 * 8 7 6 10 10 C 1.39718 * 119.98421 * 129.97803 * 9 8 7 11 11 C 1.38622 * 120.34513 * 180.02562 * 10 9 8 12 12 F 1.35094 * 119.82995 * 179.97438 * 11 10 9 13 13 C 1.37947 * 120.33024 * 0.02562 * 11 10 9 14 14 C 1.40715 * 119.96869 * 359.97438 * 13 11 10 15 15 C 1.41424 * 120.17523 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00409 * 154.72807 * 15 14 13 17 17 C 1.39927 * 119.99446 * 334.73054 * 15 14 13 18 18 N 1.30835 * 120.00146 * 342.83651 * 17 15 14 19 19 Si 1.86802 * 119.99993 * 162.84045 * 17 15 14 20 20 H 1.48500 * 109.46785 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47522 * 119.99585 * 19 17 15 22 22 H 1.48503 * 109.47094 * 239.99785 * 19 17 15 23 23 C 1.38750 * 119.99035 * 309.70549 * 9 8 7 24 24 H 1.09010 * 109.47180 * 269.71934 * 1 2 3 25 25 H 1.08998 * 109.47416 * 149.72027 * 1 2 3 26 26 H 1.08999 * 109.47609 * 29.71571 * 1 2 3 27 27 H 1.08003 * 120.38774 * 0.02562 * 3 2 1 28 28 H 0.96996 * 119.99957 * 180.27022 * 5 4 3 29 29 H 0.96999 * 120.00084 * 0.27304 * 5 4 3 30 30 H 1.07998 * 119.65974 * 179.97438 * 7 6 4 31 31 H 1.07998 * 119.82864 * 359.97438 * 10 9 8 32 32 H 1.07995 * 120.01476 * 179.97438 * 13 11 10 33 33 H 0.97004 * 119.99611 * 180.02562 * 18 17 15 34 34 H 1.08001 * 120.16161 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2141 1.1862 0.0000 4 6 3.6055 1.1479 0.0041 5 7 4.3241 2.3368 0.0085 6 7 4.2533 -0.0076 -0.0014 7 6 3.6148 -1.1604 -0.0063 8 6 2.2234 -1.2019 -0.0062 9 6 1.5098 -2.5029 -0.0111 10 6 0.4924 -2.7447 0.9155 11 6 -0.1788 -3.9575 0.9180 12 9 -1.1605 -4.1804 1.8190 13 6 0.1513 -4.9383 0.0059 14 6 1.1738 -4.7092 -0.9334 15 6 1.5154 -5.7114 -1.8708 16 1 1.9697 -5.4384 -2.8119 17 6 1.2649 -7.0568 -1.5791 18 7 1.0371 -7.4272 -0.3451 19 14 1.2560 -8.3242 -2.9514 20 1 1.5386 -7.6538 -4.2460 21 1 2.2979 -9.3486 -2.6861 22 1 -0.0762 -8.9775 -3.0131 23 6 1.8491 -3.4766 -0.9394 24 1 -0.3634 -0.0050 1.0277 25 1 -0.3634 -0.8874 -0.5182 26 1 -0.3634 0.8925 -0.5094 27 1 1.6936 2.1325 0.0004 28 1 5.2939 2.3173 0.0075 29 1 3.8561 3.1864 0.0127 30 1 4.1768 -2.0826 -0.0111 31 1 0.2281 -1.9830 1.6341 32 1 -0.3747 -5.8815 0.0127 33 1 0.8638 -8.3600 -0.1429 34 1 2.6319 -3.2902 -1.6597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242096162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:20 Heat of formation + Delta-G solvation = -22.184125 kcal Electronic energy + Delta-G solvation = -19700.329280 eV Core-core repulsion = 16510.630276 eV Total energy + Delta-G solvation = -3189.699003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.55359 -41.27288 -39.16700 -36.38111 -35.19813 -34.46268 -32.08964 -31.45625 -28.89240 -28.52867 -27.29207 -24.58893 -23.09218 -22.49207 -21.87894 -19.33709 -18.32422 -17.81489 -17.76977 -16.71907 -16.69383 -16.46552 -16.24566 -15.91313 -15.68776 -15.26814 -14.96604 -14.67051 -13.93975 -13.88721 -13.62785 -13.48160 -13.40831 -13.02474 -12.77048 -12.60525 -12.41480 -12.08634 -11.91406 -11.59742 -11.41880 -11.05910 -10.45416 -10.32155 -9.47781 -9.31659 -8.68958 -8.45624 -6.44456 0.21353 0.40005 0.80748 1.07437 1.40208 1.49556 1.55808 2.19894 2.61051 2.68162 2.98344 3.56568 3.64737 3.76326 3.95595 4.12613 4.28670 4.38244 4.54358 4.64281 4.75860 4.82555 4.89598 4.96792 4.99716 5.12491 5.19195 5.28934 5.46101 5.68545 5.72251 5.78420 5.92152 5.97575 6.26764 6.45358 6.56982 6.61622 6.85533 6.87251 7.40201 8.27880 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.004960 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.593040 B = 5643.830370 C = 6495.978459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.005 3.995 3 C -0.236 4.236 4 C 0.390 3.610 5 N -0.838 5.838 6 N -0.568 5.568 7 C 0.152 3.848 8 C -0.160 4.160 9 C 0.021 3.979 10 C -0.253 4.253 11 C 0.096 3.904 12 F -0.166 7.166 13 C -0.226 4.226 14 C 0.106 3.894 15 C -0.488 4.488 16 H 0.086 0.914 17 C 0.036 3.964 18 N -0.821 5.821 19 Si 0.984 3.016 20 H -0.254 1.254 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.222 4.222 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.163 0.837 28 H 0.407 0.593 29 H 0.421 0.579 30 H 0.152 0.848 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.290 0.710 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 14.085 -0.729 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.003 4.003 3 C -0.260 4.260 4 C 0.151 3.849 5 N -0.383 5.383 6 N -0.287 5.287 7 C -0.004 4.004 8 C -0.165 4.165 9 C 0.020 3.980 10 C -0.272 4.272 11 C 0.077 3.923 12 F -0.145 7.145 13 C -0.246 4.246 14 C 0.104 3.896 15 C -0.517 4.517 16 H 0.104 0.896 17 C -0.180 4.180 18 N -0.447 5.447 19 Si 0.805 3.195 20 H -0.177 1.177 21 H -0.190 1.190 22 H -0.191 1.191 23 C -0.242 4.242 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.180 0.820 28 H 0.237 0.763 29 H 0.253 0.747 30 H 0.169 0.831 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.535 13.895 -0.541 14.135 hybrid contribution -0.845 -0.882 -0.071 1.223 sum 1.690 13.014 -0.613 13.137 Atomic orbital electron populations 1.20916 0.89262 1.03540 1.03331 1.20331 0.97336 0.91239 0.91379 1.21360 0.92475 0.99429 1.12754 1.18673 0.88976 0.87206 0.90013 1.42074 1.09756 1.03714 1.82740 1.67129 1.40923 0.97807 1.22839 1.22491 0.90836 0.94920 0.92175 1.19489 0.94248 0.92790 1.09997 1.18005 0.93983 0.91858 0.94197 1.20462 1.03975 0.96707 1.06104 1.17743 0.88724 0.95988 0.89888 1.91325 1.61050 1.95507 1.66617 1.21219 1.02853 0.99149 1.01410 1.17588 0.88670 0.92415 0.90949 1.19900 1.37033 0.91391 1.03363 0.89636 1.26828 0.91172 1.01650 0.98377 1.69886 1.33752 1.19947 1.21072 0.85123 0.78974 0.77019 0.78427 1.17749 1.18995 1.19061 1.21242 1.04087 0.95472 1.03371 0.89829 0.92278 0.88892 0.81977 0.76287 0.74672 0.83076 0.86016 0.87402 0.89912 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.00 8.52 71.23 0.61 -2.39 16 2 C 0.00 0.14 5.90 -19.49 -0.11 0.03 16 3 C -0.24 -5.79 9.62 22.47 0.22 -5.57 16 4 C 0.39 10.17 7.74 133.09 1.03 11.20 16 5 N -0.84 -13.94 9.07 -55.41 -0.50 -14.44 16 6 N -0.57 -18.29 10.38 -192.43 -2.00 -20.29 16 7 C 0.15 5.38 10.67 84.93 0.91 6.29 16 8 C -0.16 -5.84 5.48 -19.93 -0.11 -5.95 16 9 C 0.02 0.88 4.78 -20.09 -0.10 0.79 16 10 C -0.25 -11.07 7.97 22.72 0.18 -10.89 16 11 C 0.10 4.71 7.28 22.29 0.16 4.87 16 12 F -0.17 -7.87 17.26 44.97 0.78 -7.09 16 13 C -0.23 -12.14 8.66 22.81 0.20 -11.95 16 14 C 0.11 5.65 5.56 -21.32 -0.12 5.53 16 15 C -0.49 -25.60 9.05 23.46 0.21 -25.39 16 16 H 0.09 4.28 7.90 -2.91 -0.02 4.25 16 17 C 0.04 1.76 5.14 85.25 0.44 2.20 16 18 N -0.82 -42.86 10.96 21.82 0.24 -42.62 16 19 Si 0.98 37.40 29.59 68.60 2.03 39.43 16 20 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 21 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 23 C -0.22 -10.58 9.25 22.96 0.21 -10.37 16 24 H 0.08 2.04 7.58 -2.38 -0.02 2.02 16 25 H 0.06 1.87 6.58 -2.39 -0.02 1.85 16 26 H 0.09 1.83 8.10 -2.39 -0.02 1.81 16 27 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.41 6.11 8.95 -92.71 -0.83 5.28 16 29 H 0.42 4.16 8.82 -92.71 -0.82 3.34 16 30 H 0.15 5.33 8.04 -2.91 -0.02 5.31 16 31 H 0.12 4.76 6.93 -2.91 -0.02 4.74 16 32 H 0.11 6.14 6.18 -2.91 -0.02 6.12 16 33 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 34 H 0.11 4.80 8.04 -2.91 -0.02 4.78 16 Total: -1.00 -62.03 297.68 3.79 -58.24 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.48 Total: 28.39 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 3.72 Total: -41.61 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -2.26 Total: -77.35 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.78 Total: -7.09 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -62.03 3.79 -58.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242096162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.054 kcal (2) G-P(sol) polarization free energy of solvation -62.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds