Wall clock time and date at job start Mon Mar 30 2020 01:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31850 * 119.53674 * 2 1 4 4 C 1.31712 * 121.92711 * 179.72269 * 3 2 1 5 5 C 1.39385 * 120.75928 * 0.58898 * 4 3 2 6 6 C 1.48400 * 120.49689 * 179.70054 * 5 4 3 7 7 C 1.39578 * 120.01221 * 129.72918 * 6 5 4 8 8 C 1.38472 * 120.41951 * 179.97438 * 7 6 5 9 9 C 1.37657 * 120.45277 * 359.97438 * 8 7 6 10 10 C 1.40744 * 120.01877 * 359.97438 * 9 8 7 11 11 C 1.41322 * 120.20819 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99727 * 204.66055 * 11 10 9 13 13 C 1.39925 * 120.00038 * 24.65521 * 11 10 9 14 14 N 1.30851 * 120.00174 * 17.80289 * 13 11 10 15 15 Si 1.86798 * 120.00226 * 197.79765 * 13 11 10 16 16 H 1.48498 * 109.47178 * 90.00141 * 15 13 11 17 17 H 1.48500 * 109.47441 * 210.00346 * 15 13 11 18 18 H 1.48504 * 109.47015 * 330.00170 * 15 13 11 19 19 C 1.39053 * 120.01376 * 309.69901 * 6 5 4 20 20 F 1.35105 * 120.22932 * 0.02562 * 19 6 5 21 21 C 1.39600 * 119.00129 * 359.43356 * 5 4 3 22 22 C 1.38959 * 119.53978 * 180.02562 * 2 1 3 23 23 N 1.39730 * 120.43052 * 359.94974 * 22 2 1 24 24 H 1.08997 * 109.47524 * 269.97832 * 1 2 3 25 25 H 1.09000 * 109.47243 * 29.97519 * 1 2 3 26 26 H 1.09000 * 109.47064 * 149.97625 * 1 2 3 27 27 H 1.08003 * 119.61986 * 180.31520 * 4 3 2 28 28 H 1.07998 * 119.79197 * 359.95335 * 7 6 5 29 29 H 1.07994 * 119.77289 * 179.72505 * 8 7 6 30 30 H 1.07995 * 119.99352 * 180.02562 * 9 8 7 31 31 H 0.96991 * 120.00726 * 179.97438 * 14 13 11 32 32 H 1.08004 * 120.87458 * 180.29645 * 21 5 4 33 33 H 0.97002 * 119.99742 * 180.02562 * 23 22 2 34 34 H 0.97000 * 120.00173 * 0.03003 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1570 1.1471 0.0000 4 6 3.4730 1.2021 0.0054 5 6 4.2352 0.0351 -0.0009 6 6 5.7176 0.1039 -0.0014 7 6 6.4513 -0.6401 0.9239 8 6 7.8349 -0.5827 0.9306 9 6 8.5047 0.2082 0.0247 10 6 7.7836 0.9654 -0.9174 11 6 8.4672 1.7791 -1.8489 12 1 7.9711 2.6330 -2.2862 13 6 9.7867 1.4786 -2.2045 14 7 10.2734 0.2875 -1.9666 15 14 10.8536 2.7778 -3.0188 16 1 11.5735 3.5521 -1.9760 17 1 11.8382 2.1196 -3.9146 18 1 9.9973 3.6947 -3.8134 19 6 6.3763 0.9090 -0.9242 20 9 5.6712 1.6313 -1.8223 21 6 3.5831 -1.1992 -0.0010 22 6 2.1921 -1.2090 -0.0005 23 7 1.4928 -2.4187 0.0000 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 3.9671 2.1624 0.0104 28 1 5.9368 -1.2643 1.6395 29 1 8.3920 -1.1593 1.6541 30 1 9.5839 0.2471 0.0363 31 1 11.1879 0.0790 -2.2134 32 1 4.1439 -2.1223 -0.0010 33 1 1.9775 -3.2590 0.0000 34 1 0.5228 -2.4182 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242409563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:44 Heat of formation + Delta-G solvation = -5.147439 kcal Electronic energy + Delta-G solvation = -19779.988778 eV Core-core repulsion = 16591.028540 eV Total energy + Delta-G solvation = -3188.960237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.28983 -39.94326 -37.37332 -35.05913 -34.13428 -32.73971 -30.07779 -29.57743 -29.02137 -26.33328 -25.42009 -22.77477 -22.28445 -20.77062 -20.27038 -17.65013 -17.27030 -16.25392 -15.94276 -15.65268 -15.35868 -14.86856 -14.47812 -14.18730 -14.12613 -13.87324 -12.97654 -12.84459 -12.73378 -12.35556 -12.15369 -11.90217 -11.83784 -11.56491 -11.29673 -11.14098 -11.08860 -10.81146 -10.53159 -9.99359 -9.71591 -9.33071 -9.09927 -8.96401 -7.63514 -7.48589 -7.18970 -6.88979 -4.49179 1.43504 1.82299 2.60379 2.71123 3.02628 3.07512 3.10777 3.85387 3.88206 4.22337 4.47259 4.71796 4.99668 5.18342 5.37281 5.52778 5.61428 5.65812 5.69609 5.79697 5.89477 6.15342 6.20293 6.28186 6.47484 6.69715 6.76155 6.95348 7.02922 7.09090 7.39930 7.47128 7.51473 7.73119 7.81934 7.88557 7.98802 8.43298 8.48259 8.65205 8.73481 10.03859 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.032941 B = 0.004598 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.805017 B = 6088.281774 C = 6590.746734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.033 3.967 3 N -0.448 5.448 4 C 0.061 3.939 5 C -0.020 4.020 6 C -0.066 4.066 7 C -0.199 4.199 8 C -0.112 4.112 9 C -0.140 4.140 10 C 0.085 3.915 11 C -0.453 4.453 12 H 0.084 0.916 13 C 0.077 3.923 14 N -0.789 5.789 15 Si 0.913 3.087 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.260 1.260 19 C -0.006 4.006 20 F -0.156 7.156 21 C -0.147 4.147 22 C 0.164 3.836 23 N -0.875 5.875 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.153 0.847 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.284 0.716 32 H 0.131 0.869 33 H 0.397 0.603 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 -4.267 3.517 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 N -0.156 5.156 4 C -0.099 4.099 5 C -0.022 4.022 6 C -0.068 4.068 7 C -0.219 4.219 8 C -0.130 4.130 9 C -0.160 4.160 10 C 0.082 3.918 11 C -0.481 4.481 12 H 0.102 0.898 13 C -0.142 4.142 14 N -0.414 5.414 15 Si 0.737 3.263 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.184 1.184 19 C -0.026 4.026 20 F -0.135 7.135 21 C -0.177 4.177 22 C 0.058 3.942 23 N -0.417 5.417 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.170 0.830 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.149 0.851 33 H 0.225 0.775 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.140 -3.564 3.424 11.280 hybrid contribution 0.886 -0.656 -0.569 1.241 sum -9.254 -4.219 2.854 10.564 Atomic orbital electron populations 1.20451 0.89771 1.02450 1.02039 1.20649 0.96270 0.87164 1.06878 1.67239 1.10245 1.27854 1.10244 1.22588 0.88268 0.98101 1.00956 1.19682 0.93964 0.93033 0.95564 1.18159 0.89391 1.00701 0.98518 1.20210 0.93528 1.05592 1.02540 1.20652 0.93555 0.99769 0.99044 1.21262 1.00133 0.99790 0.94782 1.17562 0.88610 0.92804 0.92864 1.19540 0.96769 1.10874 1.20964 0.89753 1.25914 0.98219 0.95578 0.94485 1.69805 1.16372 1.19000 1.36203 0.86213 0.79453 0.81079 0.79525 1.19050 1.20165 1.18377 1.17802 0.89760 1.00819 0.94236 1.91294 1.78704 1.76648 1.66833 1.21079 0.91535 0.98468 1.06587 1.18450 0.91740 0.87410 0.96553 1.42383 1.08679 1.04749 1.85899 0.91412 0.90736 0.92030 0.82985 0.88414 0.88469 0.85543 0.90540 0.85084 0.77525 0.77420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.73 36.01 0.35 -0.66 16 2 C 0.03 0.52 6.80 -82.32 -0.56 -0.04 16 3 N -0.45 -8.27 10.25 -9.04 -0.09 -8.36 16 4 C 0.06 1.20 10.04 -17.18 -0.17 1.03 16 5 C -0.02 -0.40 5.31 -104.78 -0.56 -0.95 16 6 C -0.07 -1.48 5.49 -104.91 -0.58 -2.06 16 7 C -0.20 -4.24 9.53 -39.00 -0.37 -4.61 16 8 C -0.11 -2.45 10.01 -39.71 -0.40 -2.85 16 9 C -0.14 -3.46 8.69 -38.85 -0.34 -3.80 16 10 C 0.08 2.23 5.58 -106.79 -0.60 1.63 16 11 C -0.45 -11.94 8.78 -37.78 -0.33 -12.27 16 12 H 0.08 2.21 7.73 -52.48 -0.41 1.81 16 13 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 14 N -0.79 -19.61 10.96 55.55 0.61 -19.00 16 15 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 19 C -0.01 -0.15 7.17 -38.29 -0.27 -0.42 16 20 F -0.16 -3.94 15.37 2.25 0.03 -3.90 16 21 C -0.15 -2.53 9.53 -38.75 -0.37 -2.90 16 22 C 0.16 2.46 6.75 -83.67 -0.56 1.89 16 23 N -0.88 -9.08 8.99 32.47 0.29 -8.79 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.54 6.53 -51.93 -0.34 0.20 16 27 H 0.15 3.01 7.81 -52.48 -0.41 2.60 16 28 H 0.10 1.84 8.04 -52.49 -0.42 1.42 16 29 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.13 3.18 6.15 -52.49 -0.32 2.85 16 31 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 32 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.40 3.45 8.85 -40.82 -0.36 3.09 16 34 H 0.40 3.19 6.83 -40.82 -0.28 2.91 16 LS Contribution 297.68 15.07 4.49 4.49 Total: -1.00 -28.55 297.68 -7.91 -36.47 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -3.37 Total: 10.03 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -4.85 Total: -24.22 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.81 Total: -36.15 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.03 Total: -3.90 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.55 -7.91 -36.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242409563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.318 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds