Wall clock time and date at job start Mon Mar 30 2020 01:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31850 * 119.53674 * 2 1 4 4 C 1.31712 * 121.92711 * 179.72269 * 3 2 1 5 5 C 1.39385 * 120.75928 * 0.58898 * 4 3 2 6 6 C 1.48400 * 120.49689 * 179.70054 * 5 4 3 7 7 C 1.39578 * 120.01221 * 129.72918 * 6 5 4 8 8 C 1.38472 * 120.41951 * 179.97438 * 7 6 5 9 9 C 1.37657 * 120.45277 * 359.97438 * 8 7 6 10 10 C 1.40744 * 120.01877 * 359.97438 * 9 8 7 11 11 C 1.41322 * 120.20819 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99727 * 204.66055 * 11 10 9 13 13 C 1.39925 * 120.00038 * 24.65521 * 11 10 9 14 14 N 1.30851 * 120.00174 * 17.80289 * 13 11 10 15 15 Si 1.86798 * 120.00226 * 197.79765 * 13 11 10 16 16 H 1.48498 * 109.47178 * 90.00141 * 15 13 11 17 17 H 1.48500 * 109.47441 * 210.00346 * 15 13 11 18 18 H 1.48504 * 109.47015 * 330.00170 * 15 13 11 19 19 C 1.39053 * 120.01376 * 309.69901 * 6 5 4 20 20 F 1.35105 * 120.22932 * 0.02562 * 19 6 5 21 21 C 1.39600 * 119.00129 * 359.43356 * 5 4 3 22 22 C 1.38959 * 119.53978 * 180.02562 * 2 1 3 23 23 N 1.39730 * 120.43052 * 359.94974 * 22 2 1 24 24 H 1.08997 * 109.47524 * 269.97832 * 1 2 3 25 25 H 1.09000 * 109.47243 * 29.97519 * 1 2 3 26 26 H 1.09000 * 109.47064 * 149.97625 * 1 2 3 27 27 H 1.08003 * 119.61986 * 180.31520 * 4 3 2 28 28 H 1.07998 * 119.79197 * 359.95335 * 7 6 5 29 29 H 1.07994 * 119.77289 * 179.72505 * 8 7 6 30 30 H 1.07995 * 119.99352 * 180.02562 * 9 8 7 31 31 H 0.96991 * 120.00726 * 179.97438 * 14 13 11 32 32 H 1.08004 * 120.87458 * 180.29645 * 21 5 4 33 33 H 0.97002 * 119.99742 * 180.02562 * 23 22 2 34 34 H 0.97000 * 120.00173 * 0.03003 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1570 1.1471 0.0000 4 6 3.4730 1.2021 0.0054 5 6 4.2352 0.0351 -0.0009 6 6 5.7176 0.1039 -0.0014 7 6 6.4513 -0.6401 0.9239 8 6 7.8349 -0.5827 0.9306 9 6 8.5047 0.2082 0.0247 10 6 7.7836 0.9654 -0.9174 11 6 8.4672 1.7791 -1.8489 12 1 7.9711 2.6330 -2.2862 13 6 9.7867 1.4786 -2.2045 14 7 10.2734 0.2875 -1.9666 15 14 10.8536 2.7778 -3.0188 16 1 11.5735 3.5521 -1.9760 17 1 11.8382 2.1196 -3.9146 18 1 9.9973 3.6947 -3.8134 19 6 6.3763 0.9090 -0.9242 20 9 5.6712 1.6313 -1.8223 21 6 3.5831 -1.1992 -0.0010 22 6 2.1921 -1.2090 -0.0005 23 7 1.4928 -2.4187 0.0000 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 3.9671 2.1624 0.0104 28 1 5.9368 -1.2643 1.6395 29 1 8.3920 -1.1593 1.6541 30 1 9.5839 0.2471 0.0363 31 1 11.1879 0.0790 -2.2134 32 1 4.1439 -2.1223 -0.0010 33 1 1.9775 -3.2590 0.0000 34 1 0.5228 -2.4182 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242409563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:43 Heat of formation + Delta-G solvation = -21.903927 kcal Electronic energy + Delta-G solvation = -19780.715393 eV Core-core repulsion = 16591.028540 eV Total energy + Delta-G solvation = -3189.686853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.22323 -41.26748 -39.14360 -36.31415 -35.79842 -34.22942 -31.67927 -31.10101 -30.39893 -27.69094 -27.28960 -24.10298 -23.79391 -22.54721 -21.85837 -19.31531 -18.50398 -18.00648 -17.45824 -17.12787 -16.96461 -16.37659 -16.05824 -15.78789 -15.50476 -15.45524 -14.70272 -14.47736 -14.01171 -13.79305 -13.54003 -13.37261 -13.20176 -13.06368 -12.94835 -12.75916 -12.55420 -12.21845 -12.17434 -11.80487 -11.50441 -11.12384 -10.54985 -10.38587 -9.43314 -9.12326 -8.72730 -8.49191 -6.44303 -0.00046 0.48063 0.80146 0.98296 1.36846 1.48590 1.49973 2.18456 2.59497 2.86479 2.91195 3.48628 3.50030 3.77993 3.82828 3.97456 4.17429 4.38152 4.48695 4.60607 4.68887 4.73016 4.80994 4.92078 4.98144 5.13010 5.15168 5.25109 5.39383 5.56302 5.71219 5.72214 5.98819 5.99578 6.14174 6.41650 6.52903 6.75081 6.84464 6.95094 7.13849 8.23778 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.032941 B = 0.004598 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.805017 B = 6088.281774 C = 6590.746734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.030 3.970 3 N -0.464 5.464 4 C 0.036 3.964 5 C -0.045 4.045 6 C -0.059 4.059 7 C -0.191 4.191 8 C -0.106 4.106 9 C -0.161 4.161 10 C 0.057 3.943 11 C -0.495 4.495 12 H 0.068 0.932 13 C 0.042 3.958 14 N -0.814 5.814 15 Si 0.984 3.016 16 H -0.256 1.256 17 H -0.261 1.261 18 H -0.266 1.266 19 C -0.041 4.041 20 F -0.167 7.167 21 C -0.154 4.154 22 C 0.179 3.821 23 N -0.850 5.850 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.294 0.706 32 H 0.145 0.855 33 H 0.409 0.591 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 -6.238 4.282 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 N -0.172 5.172 4 C -0.122 4.122 5 C -0.048 4.048 6 C -0.061 4.061 7 C -0.210 4.210 8 C -0.124 4.124 9 C -0.180 4.180 10 C 0.054 3.946 11 C -0.524 4.524 12 H 0.086 0.914 13 C -0.174 4.174 14 N -0.440 5.440 15 Si 0.804 3.196 16 H -0.180 1.180 17 H -0.186 1.186 18 H -0.190 1.190 19 C -0.062 4.062 20 F -0.146 7.146 21 C -0.185 4.185 22 C 0.070 3.930 23 N -0.393 5.393 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.163 0.837 33 H 0.240 0.760 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.752 -5.580 4.203 13.672 hybrid contribution 1.126 -0.201 -0.727 1.355 sum -10.626 -5.781 3.477 12.587 Atomic orbital electron populations 1.20611 0.86315 1.03962 1.03729 1.21465 0.98479 0.86686 1.04780 1.67253 1.09497 1.29569 1.10902 1.22330 0.89125 0.97533 1.03250 1.19573 0.92546 0.94425 0.98243 1.18466 0.91197 0.99136 0.97306 1.20617 0.93391 1.04892 1.02093 1.21011 0.94173 0.98712 0.98494 1.21262 0.99777 1.01150 0.95838 1.17920 0.89493 0.93585 0.93592 1.19667 0.98545 1.11442 1.22749 0.91384 1.26677 0.98557 0.97522 0.94691 1.69818 1.17183 1.20229 1.36730 0.85180 0.77545 0.78179 0.78719 1.18046 1.18556 1.18986 1.18141 0.89882 1.02503 0.95625 1.91243 1.78810 1.77148 1.67394 1.21187 0.92764 0.97730 1.06778 1.18425 0.91084 0.88832 0.94664 1.42329 1.09559 1.03662 1.83780 0.89456 0.90916 0.88932 0.84906 0.85080 0.85086 0.86547 0.89525 0.83683 0.76027 0.75523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.73 71.24 0.69 -0.98 16 2 C 0.03 0.88 6.80 42.73 0.29 1.17 16 3 N -0.46 -16.98 10.25 -182.50 -1.87 -18.85 16 4 C 0.04 1.48 10.04 84.99 0.85 2.33 16 5 C -0.05 -1.82 5.31 -19.96 -0.11 -1.93 16 6 C -0.06 -2.72 5.49 -20.05 -0.11 -2.83 16 7 C -0.19 -7.92 9.53 22.65 0.22 -7.70 16 8 C -0.11 -4.56 10.01 22.19 0.22 -4.34 16 9 C -0.16 -8.17 8.69 22.75 0.20 -7.97 16 10 C 0.06 3.16 5.58 -21.27 -0.12 3.04 16 11 C -0.50 -27.68 8.78 23.44 0.21 -27.47 16 12 H 0.07 3.85 7.73 -2.91 -0.02 3.83 16 13 C 0.04 2.11 5.14 85.25 0.44 2.55 16 14 N -0.81 -41.45 10.96 21.82 0.24 -41.21 16 15 Si 0.98 38.41 29.60 68.60 2.03 40.44 16 16 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 17 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 18 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 19 C -0.04 -2.19 7.17 23.10 0.17 -2.02 16 20 F -0.17 -9.04 15.37 44.97 0.69 -8.35 16 21 C -0.15 -5.04 9.53 22.81 0.22 -4.82 16 22 C 0.18 4.79 6.75 38.26 0.26 5.05 16 23 N -0.85 -13.73 8.99 -51.19 -0.46 -14.19 16 24 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 1.16 6.53 -2.39 -0.02 1.14 16 27 H 0.13 5.71 7.81 -2.91 -0.02 5.69 16 28 H 0.13 4.54 8.04 -2.91 -0.02 4.52 16 29 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 30 H 0.12 6.05 6.15 -2.91 -0.02 6.03 16 31 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 32 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 33 H 0.41 5.19 8.85 -92.71 -0.82 4.36 16 34 H 0.41 4.41 6.83 -92.71 -0.63 3.78 16 Total: -1.00 -65.72 297.68 3.76 -61.95 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.29 Total: 26.13 kcal Atomic # 6 Polarization: -49.34 SS G_CDS: 3.42 Total: -45.92 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -2.09 Total: -74.25 kcal Atomic # 9 Polarization: -9.04 SS G_CDS: 0.69 Total: -8.35 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -65.72 3.76 -61.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242409563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.050 kcal (2) G-P(sol) polarization free energy of solvation -65.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds