Wall clock time and date at job start Mon Mar 30 2020 01:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31890 * 119.51357 * 2 1 4 4 C 1.31663 * 121.95354 * 179.97438 * 3 2 1 5 5 C 1.39636 * 120.72357 * 359.97438 * 4 3 2 6 6 C 1.48021 * 120.51759 * 180.02562 * 5 4 3 7 7 C 1.40019 * 119.86206 * 180.28175 * 6 5 4 8 8 C 1.36192 * 120.18560 * 180.27755 * 7 6 5 9 9 C 1.40943 * 119.90002 * 359.71512 * 8 7 6 10 10 C 1.40954 * 120.13622 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99705 * 150.00733 * 10 9 8 12 12 C 1.40007 * 120.00097 * 330.01765 * 10 9 8 13 13 N 1.30812 * 119.99763 * 161.79711 * 12 10 9 14 14 Si 1.86794 * 119.99935 * 341.79869 * 12 10 9 15 15 H 1.48504 * 109.47461 * 95.41230 * 14 12 10 16 16 H 1.48502 * 109.47144 * 215.41096 * 14 12 10 17 17 H 1.48499 * 109.47556 * 335.41098 * 14 12 10 18 18 C 1.41159 * 119.72794 * 0.02562 * 9 8 7 19 19 F 1.35099 * 120.09612 * 179.97438 * 18 9 8 20 20 C 1.36581 * 119.81431 * 359.97438 * 18 9 8 21 21 C 1.39841 * 118.96160 * 0.27690 * 5 4 3 22 22 C 1.39028 * 119.51639 * 179.97438 * 2 1 3 23 23 N 1.39728 * 120.41844 * 0.02711 * 22 2 1 24 24 H 1.08996 * 109.46899 * 89.99815 * 1 2 3 25 25 H 1.08994 * 109.46715 * 210.00438 * 1 2 3 26 26 H 1.09007 * 109.46833 * 330.00151 * 1 2 3 27 27 H 1.08001 * 119.63544 * 180.02562 * 4 3 2 28 28 H 1.07998 * 119.90156 * 359.97438 * 7 6 5 29 29 H 1.08002 * 120.05053 * 179.69867 * 8 7 6 30 30 H 0.97005 * 119.99960 * 180.02562 * 13 12 10 31 31 H 1.07997 * 119.95273 * 180.02562 * 20 18 9 32 32 H 1.07995 * 120.89037 * 179.72762 * 21 5 4 33 33 H 0.97006 * 119.99545 * 359.97438 * 23 22 2 34 34 H 0.96998 * 120.00469 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1568 1.1478 0.0000 4 6 3.4722 1.2038 0.0005 5 6 4.2361 0.0349 0.0016 6 6 5.7147 0.1032 0.0027 7 6 6.4672 -1.0776 -0.0022 8 6 7.8280 -1.0224 0.0045 9 6 8.4805 0.2269 0.0104 10 6 9.8886 0.2898 0.0168 11 1 10.3939 1.1242 -0.4466 12 6 10.6321 -0.7296 0.6236 13 7 11.9002 -0.8739 0.3365 14 14 9.8134 -1.8835 1.8432 15 1 9.3767 -3.1171 1.1411 16 1 10.7794 -2.2389 2.9136 17 1 8.6332 -1.2121 2.4445 18 6 7.7180 1.4148 0.0097 19 9 8.3358 2.6163 0.0158 20 6 6.3539 1.3462 0.0030 21 6 3.5823 -1.2012 -0.0038 22 6 2.1920 -1.2098 0.0005 23 7 1.4920 -2.4191 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5139 27 1 3.9658 2.1644 0.0009 28 1 5.9670 -2.0347 -0.0063 29 1 8.4062 -1.9346 0.0057 30 1 12.4153 -1.5804 0.7567 31 1 5.7684 2.2537 0.0021 32 1 4.1423 -2.1246 -0.0075 33 1 0.5219 -2.4179 0.0005 34 1 1.9760 -3.2597 0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242409804.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:45 Heat of formation + Delta-G solvation = -21.364601 kcal Electronic energy + Delta-G solvation = -19599.694594 eV Core-core repulsion = 16410.031128 eV Total energy + Delta-G solvation = -3189.663466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.34821 -41.24560 -39.47268 -36.31020 -35.78545 -34.29958 -32.06452 -31.51768 -30.44688 -28.66308 -26.25763 -24.57514 -23.60545 -22.64841 -21.76098 -19.61135 -18.66221 -18.35442 -17.24090 -17.12598 -16.90511 -16.50984 -16.15697 -15.70627 -15.56882 -15.46525 -14.95173 -14.66772 -14.19266 -13.98169 -13.88837 -13.58703 -13.31092 -13.03982 -12.86266 -12.73748 -12.52631 -12.23790 -12.09254 -11.96006 -11.70484 -11.19456 -10.58864 -10.31889 -9.60264 -9.19749 -9.06346 -8.43445 -6.58760 -0.17340 0.59602 0.65523 0.94632 1.24384 1.40396 1.48113 2.06004 2.43212 2.93624 3.01034 3.37246 3.58897 3.72394 3.88252 4.03143 4.06275 4.17926 4.37800 4.53318 4.61949 4.68385 4.74813 4.83961 4.85231 5.03964 5.13851 5.21335 5.33636 5.40160 5.50637 5.71058 5.84067 5.89025 5.94872 6.17165 6.48850 6.49794 6.60067 6.98939 7.25765 8.00803 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.004853 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.456900 B = 5768.118107 C = 6582.287709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.013 3.987 3 N -0.461 5.461 4 C 0.012 3.988 5 C -0.015 4.015 6 C -0.159 4.159 7 C -0.054 4.054 8 C -0.228 4.228 9 C 0.055 3.945 10 C -0.465 4.465 11 H 0.056 0.944 12 C 0.049 3.951 13 N -0.826 5.826 14 Si 0.967 3.033 15 H -0.240 1.240 16 H -0.272 1.272 17 H -0.252 1.252 18 C -0.040 4.040 19 F -0.167 7.167 20 C -0.086 4.086 21 C -0.180 4.180 22 C 0.183 3.817 23 N -0.854 5.854 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.142 0.858 29 H 0.118 0.882 30 H 0.302 0.698 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.410 0.590 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.675 -7.387 1.470 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 N -0.169 5.169 4 C -0.147 4.147 5 C -0.017 4.017 6 C -0.161 4.161 7 C -0.071 4.071 8 C -0.248 4.248 9 C 0.051 3.949 10 C -0.492 4.492 11 H 0.074 0.926 12 C -0.169 4.169 13 N -0.450 5.450 14 Si 0.788 3.212 15 H -0.165 1.165 16 H -0.198 1.198 17 H -0.175 1.175 18 C -0.060 4.060 19 F -0.146 7.146 20 C -0.104 4.104 21 C -0.210 4.210 22 C 0.075 3.925 23 N -0.397 5.397 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.167 0.833 28 H 0.160 0.840 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.242 0.758 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -18.821 -6.631 1.458 20.008 hybrid contribution 1.325 -0.664 0.178 1.492 sum -17.496 -7.295 1.636 19.026 Atomic orbital electron populations 1.20555 0.87060 1.03687 1.03238 1.21300 0.98100 0.86886 1.06815 1.67205 1.10028 1.29369 1.10301 1.22556 0.88967 0.98034 1.05166 1.19458 0.92121 0.94093 0.96074 1.18007 0.91023 0.92135 1.14890 1.20839 0.92774 0.97987 0.95547 1.20684 0.95029 0.95737 1.13301 1.17976 0.93421 0.91740 0.91715 1.19448 0.90878 1.06743 1.32144 0.92575 1.26998 0.95139 0.97445 0.97281 1.69684 1.09911 1.29694 1.35721 0.85464 0.79088 0.78772 0.77879 1.16458 1.19842 1.17546 1.17670 0.91016 0.80088 1.17242 1.91288 1.84090 1.43866 1.95337 1.20688 0.91567 0.98849 0.99344 1.21221 0.92601 0.98234 1.08915 1.18442 0.91331 0.88544 0.94214 1.42378 1.09541 1.03916 1.83833 0.90186 0.89294 0.91060 0.83279 0.84048 0.86492 0.88703 0.84769 0.83519 0.75770 0.76136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.73 71.24 0.69 -0.79 16 2 C 0.01 0.33 6.80 42.74 0.29 0.62 16 3 N -0.46 -14.53 10.25 -182.26 -1.87 -16.39 16 4 C 0.01 0.40 10.60 85.06 0.90 1.30 16 5 C -0.01 -0.49 5.89 -19.96 -0.12 -0.61 16 6 C -0.16 -6.07 5.90 -19.88 -0.12 -6.18 16 7 C -0.05 -2.02 9.37 22.23 0.21 -1.82 16 8 C -0.23 -10.06 7.10 22.46 0.16 -9.90 16 9 C 0.06 2.79 5.11 -21.23 -0.11 2.69 16 10 C -0.46 -25.92 9.24 23.36 0.22 -25.70 16 11 H 0.06 3.46 7.97 -2.91 -0.02 3.44 16 12 C 0.05 2.53 5.40 85.27 0.46 2.99 16 13 N -0.83 -43.31 13.93 21.84 0.30 -43.00 16 14 Si 0.97 39.63 24.51 68.60 1.68 41.31 16 15 H -0.24 -8.80 6.71 99.48 0.67 -8.14 16 16 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 17 H -0.25 -10.69 6.87 99.48 0.68 -10.01 16 18 C -0.04 -1.97 7.26 22.60 0.16 -1.80 16 19 F -0.17 -8.44 16.75 44.97 0.75 -7.69 16 20 C -0.09 -3.57 9.34 22.25 0.21 -3.36 16 21 C -0.18 -4.94 9.40 22.85 0.21 -4.72 16 22 C 0.18 4.28 6.75 38.26 0.26 4.54 16 23 N -0.85 -11.82 8.99 -51.19 -0.46 -12.28 16 24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.09 0.97 6.52 -2.39 -0.02 0.96 16 26 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.15 4.75 6.19 -2.91 -0.02 4.73 16 28 H 0.14 4.21 6.24 -2.91 -0.02 4.19 16 29 H 0.12 4.93 4.73 -2.91 -0.01 4.91 16 30 H 0.30 13.92 8.30 -92.70 -0.77 13.15 16 31 H 0.13 4.90 6.19 -2.91 -0.02 4.88 16 32 H 0.15 3.42 6.30 -2.91 -0.02 3.40 16 33 H 0.41 3.73 6.82 -92.70 -0.63 3.10 16 34 H 0.41 4.23 8.85 -92.71 -0.82 3.41 16 Total: -1.00 -63.65 287.40 3.51 -60.13 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.33 Total: 20.67 kcal Atomic # 6 Polarization: -46.18 SS G_CDS: 3.43 Total: -42.75 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -2.02 Total: -71.68 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.75 Total: -7.69 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.68 Total: 41.31 kcal Total: -63.65 3.51 -60.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242409804.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.770 kcal (2) G-P(sol) polarization free energy of solvation -63.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds