Wall clock time and date at job start Mon Mar 30 2020 01:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31888 * 119.50992 * 2 1 4 4 C 1.31661 * 121.94873 * 179.70063 * 3 2 1 5 5 C 1.39665 * 120.72595 * 0.59105 * 4 3 2 6 6 C 1.47969 * 120.52248 * 179.72525 * 5 4 3 7 7 C 1.39936 * 119.89527 * 129.99593 * 6 5 4 8 8 C 1.36232 * 120.14289 * 180.27507 * 7 6 5 9 9 C 1.40969 * 119.92868 * 359.72533 * 8 7 6 10 10 C 1.41027 * 120.10502 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00492 * 24.71498 * 10 9 8 12 12 C 1.40002 * 119.99759 * 204.71773 * 10 9 8 13 13 N 1.30801 * 120.00561 * 17.95146 * 12 10 9 14 14 Si 1.86802 * 119.99841 * 197.94909 * 12 10 9 15 15 H 1.48501 * 109.46948 * 89.99818 * 14 12 10 16 16 H 1.48506 * 109.47364 * 209.99681 * 14 12 10 17 17 H 1.48498 * 109.47417 * 330.00133 * 14 12 10 18 18 C 1.40860 * 119.78879 * 359.97438 * 9 8 7 19 19 C 1.36490 * 119.85996 * 0.02562 * 18 9 8 20 20 F 1.35098 * 119.96712 * 179.97438 * 19 18 9 21 21 C 1.39867 * 118.95098 * 359.44835 * 5 4 3 22 22 C 1.39015 * 118.22901 * 0.25700 * 21 5 4 23 23 N 1.39725 * 120.41864 * 180.02562 * 22 21 5 24 24 H 1.08994 * 109.46696 * 269.97439 * 1 2 3 25 25 H 1.08998 * 109.46837 * 29.97713 * 1 2 3 26 26 H 1.09001 * 109.47139 * 149.97581 * 1 2 3 27 27 H 1.08003 * 119.63371 * 180.29252 * 4 3 2 28 28 H 1.07996 * 119.92291 * 0.02562 * 7 6 5 29 29 H 1.08002 * 120.03625 * 179.70746 * 8 7 6 30 30 H 0.97001 * 120.00429 * 179.97438 * 13 12 10 31 31 H 1.08009 * 120.07005 * 180.02562 * 18 9 8 32 32 H 1.07998 * 120.88651 * 180.27025 * 21 5 4 33 33 H 0.96999 * 120.00318 * 359.97438 * 23 22 21 34 34 H 0.96999 * 120.00134 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1567 1.1478 0.0000 4 6 3.4721 1.2038 0.0058 5 6 4.2362 0.0347 -0.0001 6 6 5.7143 0.1030 0.0004 7 6 6.4469 -0.6485 0.9261 8 6 7.8077 -0.5851 0.9347 9 6 8.4795 0.2347 0.0053 10 6 9.8881 0.3035 0.0112 11 1 10.4672 -0.5158 0.4109 12 6 10.5359 1.4341 -0.5010 13 7 9.8750 2.5520 -0.6571 14 14 12.3441 1.3460 -0.9615 15 1 12.4735 0.9344 -2.3824 16 1 12.9683 2.6803 -0.7738 17 1 13.0280 0.3532 -0.0944 18 6 7.7394 0.9851 -0.9293 19 6 6.3763 0.9151 -0.9302 20 9 5.6643 1.6342 -1.8252 21 6 3.5821 -1.2016 -0.0005 22 6 2.1920 -1.2100 -0.0005 23 7 1.4918 -2.4192 -0.0005 24 1 -0.3632 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 3.9657 2.1645 0.0104 28 1 5.9322 -1.2769 1.6377 29 1 8.3713 -1.1622 1.6529 30 1 10.3239 3.3354 -1.0117 31 1 8.2495 1.6144 -1.6436 32 1 4.1421 -2.1251 -0.0006 33 1 1.9757 -3.2599 -0.0008 34 1 0.5219 -2.4180 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242410068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:48 Heat of formation + Delta-G solvation = -7.403994 kcal Electronic energy + Delta-G solvation = -19648.823480 eV Core-core repulsion = 16459.765391 eV Total energy + Delta-G solvation = -3189.058089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.70133 -39.80492 -37.50891 -34.98999 -34.16715 -32.64022 -30.05941 -29.32604 -29.10084 -27.20896 -24.86941 -22.73535 -21.96715 -21.03422 -20.17984 -17.77458 -17.28575 -16.54839 -15.87537 -15.56777 -15.02454 -14.80381 -14.62944 -14.32639 -14.17241 -14.00121 -13.14066 -12.76649 -12.63450 -12.29573 -12.14395 -12.05001 -11.91194 -11.66031 -11.29453 -11.14823 -10.97572 -10.87104 -10.46136 -10.12121 -9.83489 -9.49186 -8.99651 -8.80055 -7.64508 -7.52083 -7.19880 -7.00861 -4.62183 1.55118 1.92702 2.56305 2.81252 2.95148 2.98560 3.03730 3.74179 3.94351 4.23958 4.44866 4.82329 5.08798 5.33919 5.38105 5.56914 5.65657 5.69194 5.73551 5.80745 6.00140 6.16513 6.26008 6.38392 6.56986 6.75189 6.80179 6.90991 7.03135 7.07719 7.41824 7.49727 7.60550 7.67940 7.76491 7.80356 8.02761 8.34476 8.58336 8.58870 8.66188 9.88960 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.041736 B = 0.004189 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.721681 B = 6682.964462 C = 7112.176501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.020 3.980 3 N -0.447 5.447 4 C 0.047 3.953 5 C 0.009 3.991 6 C -0.239 4.239 7 C -0.040 4.040 8 C -0.235 4.235 9 C 0.135 3.865 10 C -0.443 4.443 11 H 0.087 0.913 12 C 0.073 3.927 13 N -0.772 5.772 14 Si 0.915 3.085 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.259 1.259 18 C -0.210 4.210 19 C 0.137 3.863 20 F -0.161 7.161 21 C -0.163 4.163 22 C 0.167 3.833 23 N -0.877 5.877 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.288 0.712 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.395 0.605 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 -6.097 0.616 10.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 N -0.155 5.155 4 C -0.113 4.113 5 C 0.006 3.994 6 C -0.242 4.242 7 C -0.058 4.058 8 C -0.254 4.254 9 C 0.132 3.868 10 C -0.470 4.470 11 H 0.105 0.895 12 C -0.148 4.148 13 N -0.394 5.394 14 Si 0.738 3.262 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.183 1.183 18 C -0.230 4.230 19 C 0.118 3.882 20 F -0.139 7.139 21 C -0.193 4.193 22 C 0.062 3.938 23 N -0.419 5.419 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.223 0.777 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.332 -4.980 0.515 10.590 hybrid contribution 1.107 -0.910 -0.345 1.474 sum -8.226 -5.891 0.170 10.119 Atomic orbital electron populations 1.20416 0.90023 1.02208 1.01842 1.20577 0.96085 0.87179 1.08380 1.67172 1.10456 1.27886 1.09941 1.22649 0.88229 0.98146 1.02314 1.19539 0.93787 0.92488 0.93561 1.17831 0.89603 1.10706 1.06059 1.20144 0.93780 0.96024 0.95868 1.20708 0.93284 1.08413 1.03008 1.17444 0.93272 0.88342 0.87748 1.19722 0.91619 1.02192 1.33496 0.89501 1.26084 1.01562 0.94449 0.92731 1.69802 1.39082 1.00874 1.29681 0.86193 0.80962 0.78864 0.80161 1.18934 1.19987 1.18286 1.20951 0.90363 1.07737 1.03908 1.17336 0.89643 0.92598 0.88664 1.91358 1.79220 1.76522 1.66846 1.21119 0.91404 0.98462 1.08291 1.18459 0.91800 0.87259 0.96273 1.42388 1.08616 1.04799 1.86053 0.91641 0.90943 0.92213 0.83369 0.88376 0.88100 0.90117 0.85216 0.85464 0.77658 0.77539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.73 36.01 0.35 -0.68 16 2 C 0.02 0.33 6.80 -82.27 -0.56 -0.23 16 3 N -0.45 -8.47 10.25 -8.95 -0.09 -8.56 16 4 C 0.05 0.95 10.04 -17.09 -0.17 0.78 16 5 C 0.01 0.18 5.31 -104.77 -0.56 -0.38 16 6 C -0.24 -5.33 5.52 -104.56 -0.58 -5.91 16 7 C -0.04 -0.85 9.46 -39.67 -0.38 -1.22 16 8 C -0.23 -5.35 9.73 -39.27 -0.38 -5.73 16 9 C 0.14 3.39 5.57 -106.81 -0.60 2.79 16 10 C -0.44 -10.86 9.03 -37.86 -0.34 -11.20 16 11 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 12 C 0.07 1.71 5.13 -17.33 -0.09 1.62 16 13 N -0.77 -18.84 10.96 55.55 0.61 -18.24 16 14 Si 0.91 17.31 29.60 -169.99 -5.03 12.28 16 15 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 16 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 17 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 18 C -0.21 -5.33 8.60 -39.22 -0.34 -5.67 16 19 C 0.14 3.31 7.12 -39.50 -0.28 3.03 16 20 F -0.16 -3.81 15.90 2.25 0.04 -3.78 16 21 C -0.16 -2.83 9.53 -38.68 -0.37 -3.20 16 22 C 0.17 2.57 6.75 -83.67 -0.56 2.00 16 23 N -0.88 -9.38 8.99 32.47 0.29 -9.09 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.55 6.52 -51.93 -0.34 0.21 16 27 H 0.15 3.02 7.81 -52.48 -0.41 2.61 16 28 H 0.10 1.84 8.04 -52.49 -0.42 1.41 16 29 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 31 H 0.13 3.42 6.16 -52.48 -0.32 3.10 16 32 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.40 3.53 8.85 -40.82 -0.36 3.17 16 34 H 0.40 3.33 6.82 -40.82 -0.28 3.05 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -27.51 298.15 -7.92 -35.43 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -3.37 Total: 11.47 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -4.85 Total: -24.00 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.81 Total: -35.89 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.51 -7.92 -35.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242410068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.026 kcal (2) G-P(sol) polarization free energy of solvation -27.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds