Wall clock time and date at job start Mon Mar 30 2020 01:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31854 * 119.53769 * 2 1 4 4 C 1.31712 * 121.92441 * 180.02562 * 3 2 1 5 5 C 1.39364 * 120.76642 * 359.97438 * 4 3 2 6 6 C 1.48430 * 120.49939 * 180.02562 * 5 4 3 7 7 C 1.39686 * 119.98541 * 180.02562 * 6 5 4 8 8 C 1.38627 * 120.34774 * 180.29839 * 7 6 5 9 9 F 1.35099 * 119.83197 * 179.72215 * 8 7 6 10 10 C 1.37933 * 120.32726 * 359.44084 * 8 7 6 11 11 C 1.40712 * 119.96495 * 0.55500 * 10 8 7 12 12 C 1.41428 * 120.17201 * 179.74492 * 11 10 8 13 13 H 1.08005 * 119.99867 * 204.50420 * 12 11 10 14 14 C 1.39928 * 120.00171 * 24.50651 * 12 11 10 15 15 N 1.30830 * 119.99791 * 17.91788 * 14 12 11 16 16 Si 1.86804 * 120.00040 * 197.92430 * 14 12 11 17 17 H 1.48500 * 109.46938 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47358 * 119.99707 * 16 14 12 19 19 H 1.48502 * 109.46966 * 239.99848 * 16 14 12 20 20 C 1.38732 * 119.98412 * 0.02562 * 6 5 4 21 21 C 1.39588 * 119.00506 * 0.27220 * 5 4 3 22 22 C 1.38965 * 119.54172 * 179.97438 * 2 1 3 23 23 N 1.39719 * 120.43096 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.46775 * 89.99376 * 1 2 3 25 25 H 1.09003 * 109.46711 * 209.99750 * 1 2 3 26 26 H 1.08996 * 109.46714 * 329.99747 * 1 2 3 27 27 H 1.08008 * 119.61867 * 180.02562 * 4 3 2 28 28 H 1.07992 * 119.82503 * 0.02562 * 7 6 5 29 29 H 1.08004 * 120.01765 * 180.29893 * 10 8 7 30 30 H 0.97003 * 119.99321 * 179.97438 * 15 14 12 31 31 H 1.08005 * 120.16328 * 0.02562 * 20 6 5 32 32 H 1.08004 * 120.87795 * 179.74681 * 21 5 4 33 33 H 0.97008 * 120.00413 * 0.02562 * 23 22 2 34 34 H 0.97005 * 119.99964 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1571 1.1472 0.0000 4 6 3.4731 1.2020 -0.0005 5 6 4.2352 0.0352 -0.0005 6 6 5.7179 0.1040 -0.0005 7 6 6.4713 -1.0723 -0.0011 8 6 7.8565 -1.0169 0.0052 9 9 8.5748 -2.1610 0.0102 10 6 8.5048 0.2006 0.0004 11 6 7.7592 1.3939 0.0009 12 6 8.4195 2.6446 0.0014 13 1 7.9190 3.5193 0.3898 14 6 9.7212 2.7488 -0.5012 15 7 10.1998 1.8106 -1.2774 16 14 10.7758 4.2273 -0.0638 17 1 10.0074 5.1388 0.8216 18 1 12.0015 3.7706 0.6392 19 1 11.1566 4.9482 -1.3050 20 6 6.3549 1.3364 0.0001 21 6 3.5833 -1.1990 -0.0058 22 6 2.1922 -1.2090 0.0005 23 7 1.4931 -2.4187 0.0016 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3632 0.8899 0.5139 27 1 3.9673 2.1624 -0.0001 28 1 5.9721 -2.0299 -0.0019 29 1 9.5842 0.2379 0.0004 30 1 11.1021 1.8830 -1.6261 31 1 5.7745 2.2473 0.0009 32 1 4.1441 -2.1221 -0.0101 33 1 0.5230 -2.4183 0.0016 34 1 1.9777 -3.2590 0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242411318.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:49 Heat of formation + Delta-G solvation = -22.250399 kcal Electronic energy + Delta-G solvation = -19469.120694 eV Core-core repulsion = 16279.418817 eV Total energy + Delta-G solvation = -3189.701877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.60460 -41.32512 -39.24090 -36.29322 -35.78458 -34.12032 -31.75959 -31.04106 -30.46669 -27.68672 -27.37397 -24.28741 -23.87480 -22.35214 -21.84785 -19.46055 -18.48594 -17.96079 -17.41600 -17.09719 -16.57607 -16.36258 -16.26550 -16.17381 -15.59356 -15.51428 -14.87346 -14.43011 -14.15221 -13.83912 -13.62859 -13.37331 -13.08568 -13.00451 -12.83930 -12.70636 -12.48880 -12.19743 -12.11577 -12.01314 -11.53597 -11.17618 -10.59423 -10.41561 -9.45240 -9.06051 -8.72340 -8.42970 -6.47661 -0.17164 0.51646 0.75596 1.16840 1.40334 1.51335 1.56347 2.18925 2.56479 2.88854 3.01340 3.47036 3.58517 3.66691 3.81771 3.95354 4.15213 4.39787 4.44178 4.52656 4.70073 4.77221 4.83038 4.91587 4.98785 5.03927 5.16861 5.23593 5.35303 5.57400 5.67610 5.76719 5.87601 5.92172 6.20741 6.43767 6.52939 6.81179 6.81809 6.95493 7.17315 8.24491 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.004602 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.430939 B = 6083.249101 C = 7119.978855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.031 3.969 3 N -0.462 5.462 4 C 0.034 3.966 5 C -0.046 4.046 6 C -0.003 4.003 7 C -0.260 4.260 8 C 0.096 3.904 9 F -0.164 7.164 10 C -0.223 4.223 11 C 0.103 3.897 12 C -0.485 4.485 13 H 0.090 0.910 14 C 0.035 3.965 15 N -0.819 5.819 16 Si 0.986 3.014 17 H -0.253 1.253 18 H -0.266 1.266 19 H -0.265 1.265 20 C -0.217 4.217 21 C -0.161 4.161 22 C 0.177 3.823 23 N -0.853 5.853 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.129 0.871 29 H 0.111 0.889 30 H 0.291 0.709 31 H 0.118 0.882 32 H 0.143 0.857 33 H 0.412 0.588 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.452 -5.030 1.897 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 N -0.171 5.171 4 C -0.125 4.125 5 C -0.048 4.048 6 C -0.004 4.004 7 C -0.280 4.280 8 C 0.077 3.923 9 F -0.143 7.143 10 C -0.244 4.244 11 C 0.100 3.900 12 C -0.513 4.513 13 H 0.108 0.892 14 C -0.181 4.181 15 N -0.444 5.444 16 Si 0.806 3.194 17 H -0.176 1.176 18 H -0.191 1.191 19 H -0.190 1.190 20 C -0.236 4.236 21 C -0.191 4.191 22 C 0.068 3.932 23 N -0.395 5.395 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.170 0.830 28 H 0.147 0.853 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.161 0.839 33 H 0.244 0.756 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -13.719 -4.350 1.747 14.498 hybrid contribution 1.622 -0.796 -0.066 1.808 sum -12.097 -5.146 1.681 13.253 Atomic orbital electron populations 1.20609 0.86516 1.04015 1.03563 1.21437 0.98389 0.86736 1.04782 1.67306 1.09682 1.29287 1.10779 1.22582 0.88956 0.98100 1.02852 1.19614 0.92384 0.94425 0.98410 1.18193 0.90725 0.92683 0.98767 1.20508 0.90722 0.98502 1.18219 1.17715 0.89961 0.80965 1.03694 1.91331 1.78917 1.49504 1.94573 1.21293 1.00204 0.90971 1.11898 1.17619 0.91523 0.93016 0.87805 1.19948 0.99404 0.95395 1.36572 0.89207 1.26870 0.98899 1.00761 0.91586 1.69879 1.17639 1.34732 1.22156 0.85093 0.77706 0.77275 0.79315 1.17588 1.19070 1.18956 1.21353 0.93831 0.96305 1.12160 1.21240 0.92797 0.98186 1.06904 1.18451 0.91101 0.88825 0.94785 1.42352 1.09574 1.03768 1.83833 0.89814 0.89014 0.90684 0.83009 0.85335 0.87081 0.89781 0.86401 0.83917 0.75565 0.76147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 9.73 71.24 0.69 -0.87 16 2 C 0.03 0.83 6.80 42.73 0.29 1.12 16 3 N -0.46 -15.43 10.25 -182.50 -1.87 -17.30 16 4 C 0.03 1.23 10.59 84.98 0.90 2.13 16 5 C -0.05 -1.71 5.89 -19.96 -0.12 -1.83 16 6 C 0.00 -0.11 5.87 -20.09 -0.12 -0.23 16 7 C -0.26 -11.53 9.42 22.71 0.21 -11.32 16 8 C 0.10 4.74 7.28 22.29 0.16 4.90 16 9 F -0.16 -7.77 17.26 44.97 0.78 -7.00 16 10 C -0.22 -12.02 8.67 22.80 0.20 -11.83 16 11 C 0.10 5.47 5.57 -21.32 -0.12 5.35 16 12 C -0.48 -25.21 9.05 23.47 0.21 -25.00 16 13 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 14 C 0.04 1.72 5.13 85.25 0.44 2.16 16 15 N -0.82 -42.40 10.96 21.82 0.24 -42.16 16 16 Si 0.99 37.00 29.60 68.60 2.03 39.03 16 17 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 18 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 20 C -0.22 -10.37 9.18 22.95 0.21 -10.16 16 21 C -0.16 -4.99 9.40 22.81 0.21 -4.78 16 22 C 0.18 4.49 6.75 38.27 0.26 4.75 16 23 N -0.85 -13.12 8.99 -51.19 -0.46 -13.58 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.03 6.52 -2.39 -0.02 1.01 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.15 5.47 6.21 -2.91 -0.02 5.45 16 28 H 0.13 4.91 6.24 -2.91 -0.02 4.89 16 29 H 0.11 6.29 6.15 -2.91 -0.02 6.27 16 30 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 31 H 0.12 5.19 6.21 -2.91 -0.02 5.18 16 32 H 0.14 4.01 6.30 -2.91 -0.02 3.99 16 33 H 0.41 4.13 6.83 -92.70 -0.63 3.50 16 34 H 0.41 4.99 8.85 -92.70 -0.82 4.17 16 Total: -1.00 -62.52 293.52 3.88 -58.64 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -0.27 Total: 27.96 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 3.44 Total: -45.60 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -2.09 Total: -73.04 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 0.78 Total: -7.00 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -62.52 3.88 -58.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242411318.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.388 kcal (2) G-P(sol) polarization free energy of solvation -62.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds