Wall clock time and date at job start Mon Mar 30 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31843 * 119.54149 * 2 1 4 4 C 1.31717 * 121.93167 * 179.97438 * 3 2 1 5 5 C 1.39373 * 120.76153 * 359.97367 * 4 3 2 6 6 C 1.48406 * 120.50187 * 180.02562 * 5 4 3 7 7 C 1.39805 * 119.96895 * 180.20954 * 6 5 4 8 8 C 1.38229 * 120.42406 * 180.25800 * 7 6 5 9 9 C 1.38067 * 120.34750 * 359.78996 * 8 7 6 10 10 F 1.35104 * 120.04083 * 179.97438 * 9 8 7 11 11 C 1.41035 * 119.91561 * 359.97438 * 9 8 7 12 12 C 1.41324 * 120.20729 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99581 * 334.67692 * 12 11 9 14 14 C 1.39913 * 120.00180 * 154.67583 * 12 11 9 15 15 N 1.30857 * 119.99699 * 342.93251 * 14 12 11 16 16 Si 1.86798 * 120.00194 * 162.93610 * 14 12 11 17 17 H 1.48499 * 109.46919 * 60.00161 * 16 14 12 18 18 H 1.48499 * 109.47049 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46986 * 299.99875 * 16 14 12 20 20 C 1.38667 * 119.95885 * 0.02562 * 6 5 4 21 21 C 1.39599 * 119.00233 * 0.30039 * 5 4 3 22 22 C 1.38967 * 119.53759 * 179.97438 * 2 1 3 23 23 N 1.39722 * 120.43691 * 0.04042 * 22 2 1 24 24 H 1.09000 * 109.47479 * 90.00110 * 1 2 3 25 25 H 1.09001 * 109.47571 * 209.99925 * 1 2 3 26 26 H 1.09004 * 109.47127 * 329.99896 * 1 2 3 27 27 H 1.08008 * 119.61550 * 179.97438 * 4 3 2 28 28 H 1.08004 * 119.78743 * 0.04781 * 7 6 5 29 29 H 1.08004 * 119.82654 * 179.76843 * 8 7 6 30 30 H 0.96998 * 120.00101 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.17484 * 0.02562 * 20 6 5 32 32 H 1.07998 * 120.87423 * 179.70211 * 21 5 4 33 33 H 0.97005 * 119.99793 * 0.02562 * 23 22 2 34 34 H 0.96999 * 120.00280 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1570 1.1470 0.0000 4 6 3.4730 1.2020 0.0005 5 6 4.2352 0.0351 0.0016 6 6 5.7177 0.1037 0.0027 7 6 6.4713 -1.0738 -0.0006 8 6 7.8526 -1.0209 0.0058 9 6 8.5040 0.1964 0.0112 10 9 9.8543 0.2409 0.0179 11 6 7.7581 1.3933 0.0096 12 6 8.4185 2.6428 0.0156 13 1 9.4162 2.7242 0.4212 14 6 7.7800 3.7741 -0.5038 15 7 6.7387 3.6371 -1.2843 16 14 8.4140 5.4802 -0.0831 17 1 9.8177 5.6152 -0.5484 18 1 7.5701 6.5012 -0.7544 19 1 8.3584 5.6802 1.3872 20 6 6.3539 1.3358 0.0032 21 6 3.5832 -1.1992 -0.0042 22 6 2.1921 -1.2091 0.0005 23 7 1.4929 -2.4188 0.0002 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 3.9672 2.1624 0.0001 28 1 5.9710 -2.0310 -0.0048 29 1 8.4252 -1.9366 0.0069 30 1 6.2957 4.4215 -1.6441 31 1 5.7733 2.2465 0.0032 32 1 4.1439 -2.1222 -0.0084 33 1 0.5229 -2.4183 -0.0007 34 1 1.9775 -3.2591 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242411370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:38 Heat of formation + Delta-G solvation = -5.065485 kcal Electronic energy + Delta-G solvation = -19720.453466 eV Core-core repulsion = 16531.496783 eV Total energy + Delta-G solvation = -3188.956683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.30054 -39.94996 -37.46783 -34.96176 -34.06130 -32.78312 -30.10186 -29.67152 -29.06221 -26.09768 -25.50447 -22.93090 -22.12783 -21.05189 -19.93547 -17.70934 -17.08976 -16.40310 -16.18992 -15.51142 -15.23268 -14.71985 -14.37674 -14.32141 -14.05784 -13.83500 -13.02611 -12.84543 -12.60752 -12.41868 -12.14616 -11.88489 -11.69056 -11.50819 -11.37879 -11.19819 -11.05479 -10.87143 -10.56088 -10.18206 -9.63333 -9.40861 -9.03049 -8.94755 -7.70647 -7.54840 -7.02612 -6.83078 -4.50761 1.33803 1.88386 2.65224 2.81130 3.03483 3.05860 3.14027 3.85700 3.90509 4.23164 4.59692 4.77979 5.03739 5.27369 5.40268 5.53922 5.65126 5.71088 5.75220 5.80304 5.84679 6.13579 6.18622 6.27729 6.42875 6.66106 6.78581 6.99589 7.03088 7.11063 7.36560 7.45349 7.53064 7.75994 7.77922 7.83745 7.96853 8.38329 8.56721 8.63225 8.70235 10.03467 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019351 B = 0.005637 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.611180 B = 4966.377983 C = 6325.524148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.028 3.972 3 N -0.447 5.447 4 C 0.052 3.948 5 C -0.015 4.015 6 C -0.055 4.055 7 C -0.202 4.202 8 C -0.123 4.123 9 C -0.023 4.023 10 F -0.162 7.162 11 C 0.083 3.917 12 C -0.452 4.452 13 H 0.084 0.916 14 C 0.076 3.924 15 N -0.787 5.787 16 Si 0.914 3.086 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.118 4.118 21 C -0.159 4.159 22 C 0.165 3.835 23 N -0.876 5.876 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.160 0.840 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.286 0.714 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.396 0.604 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.347 -6.447 1.649 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 N -0.154 5.154 4 C -0.108 4.108 5 C -0.018 4.018 6 C -0.056 4.056 7 C -0.221 4.221 8 C -0.142 4.142 9 C -0.043 4.043 10 F -0.141 7.141 11 C 0.080 3.920 12 C -0.480 4.480 13 H 0.102 0.898 14 C -0.143 4.143 15 N -0.412 5.412 16 Si 0.738 3.262 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.137 4.137 21 C -0.189 4.189 22 C 0.060 3.940 23 N -0.418 5.418 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.177 0.823 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.225 0.775 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.941 -5.471 1.492 11.445 hybrid contribution 0.911 -0.480 0.010 1.030 sum -9.030 -5.951 1.502 10.918 Atomic orbital electron populations 1.20439 0.89931 1.02289 1.01995 1.20628 0.96200 0.87223 1.07429 1.67254 1.10391 1.27811 1.09993 1.22744 0.88194 0.98635 1.01190 1.19779 0.94269 0.92806 0.94912 1.18367 0.89210 0.94297 1.03736 1.20174 0.92386 0.96036 1.13509 1.20407 0.94634 0.95275 1.03875 1.17947 0.76022 0.94373 1.15994 1.91278 1.30339 1.97410 1.95087 1.17540 0.91948 0.91429 0.91097 1.19496 1.02336 0.91713 1.34471 0.89781 1.25920 0.94129 1.01826 0.92409 1.69779 1.17153 1.33145 1.21083 0.86257 0.79823 0.80069 0.80087 1.18839 1.20071 1.18582 1.21339 0.93719 0.95780 1.02838 1.21075 0.91530 0.98664 1.07616 1.18450 0.91776 0.87326 0.96484 1.42378 1.08653 1.04751 1.86034 0.91500 0.92142 0.90826 0.82276 0.88197 0.87882 0.90256 0.84836 0.85102 0.77477 0.77645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.73 36.00 0.35 -0.68 16 2 C 0.03 0.44 6.80 -82.32 -0.56 -0.12 16 3 N -0.45 -8.35 10.25 -9.04 -0.09 -8.45 16 4 C 0.05 1.05 10.59 -17.18 -0.18 0.86 16 5 C -0.02 -0.30 5.89 -104.78 -0.62 -0.92 16 6 C -0.05 -1.22 5.87 -104.96 -0.62 -1.84 16 7 C -0.20 -4.25 9.44 -39.00 -0.37 -4.62 16 8 C -0.12 -2.72 9.99 -39.65 -0.40 -3.11 16 9 C -0.02 -0.58 7.31 -38.58 -0.28 -0.86 16 10 F -0.16 -4.04 16.71 2.25 0.04 -4.00 16 11 C 0.08 2.17 5.57 -106.80 -0.59 1.58 16 12 C -0.45 -11.80 8.77 -37.78 -0.33 -12.13 16 13 H 0.08 2.17 7.74 -52.48 -0.41 1.77 16 14 C 0.08 1.85 5.15 -17.34 -0.09 1.76 16 15 N -0.79 -19.41 10.97 55.55 0.61 -18.80 16 16 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 17 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 C -0.12 -2.89 8.07 -38.56 -0.31 -3.20 16 21 C -0.16 -2.69 9.40 -38.75 -0.36 -3.05 16 22 C 0.17 2.46 6.75 -83.67 -0.56 1.89 16 23 N -0.88 -9.02 8.99 32.47 0.29 -8.73 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.54 6.53 -51.93 -0.34 0.20 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.16 3.26 6.21 -52.48 -0.33 2.93 16 28 H 0.10 1.81 6.24 -52.48 -0.33 1.48 16 29 H 0.10 1.99 8.06 -52.48 -0.42 1.57 16 30 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 31 H 0.13 3.30 4.34 -52.49 -0.23 3.07 16 32 H 0.13 1.98 6.30 -52.49 -0.33 1.65 16 33 H 0.40 3.20 6.83 -40.82 -0.28 2.92 16 34 H 0.40 3.36 8.85 -40.82 -0.36 3.00 16 LS Contribution 292.83 15.07 4.41 4.41 Total: -1.00 -28.26 292.83 -7.70 -35.95 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -3.00 Total: 10.83 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -4.93 Total: -24.43 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.81 Total: -35.98 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.04 Total: -4.00 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.26 -7.70 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242411370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.887 kcal (2) G-P(sol) polarization free energy of solvation -28.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds